Clone BO28480 Report

Search the DGRC for BO28480

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:284
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG2209-RA
Protein status:BO28480.pep: Imported from assembly
Sequenced Size:493

Clone Sequence Records

BO28480.complete Sequence

493 bp assembled on 2011-06-27

GenBank Submission: KX798643

> BO28480.complete
GAAGTTATCAGTCGACATGCCAGTTTTGAAACTTAATGCTTATTTCACCA
AATTCTTCCCATCCTCGATGGTGCGTTCCAAGGAGTTGGTGCGAAGAAGG
TATTCGATGAAGGTCGCGCAGGTGCGAAGATCTTACAACATAAAGTTCAA
TGAAGATCCAGAATTCGAATGCGATGCCACAGTCACGAATATGCCCCAAT
CCTTGAAGACTATGATTAAGAGGAAACTGCTCTCAAAGCGTGTGATCGGT
AGCTTTCGACTAAGATTCCATAGCAATTCGTTTAAGAAAAGGCTCGAGAT
CACAGCCACAATAACCAACCCAACAGTTCCGTCGGACACAGATCTCGCTC
CGGAGGATGAGCAGCTGTACGAGCTGTACATATGCAGTAGCCAGGGTCAA
TTGCTGGGCAAGATTCCCTTCCTGGAGAGCGACTACCGGCGTGCAGCTCG
CGAGGCCATCGATTTCCTGGCCTTCGCAAGCTTTCTAGACCAT

BO28480.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2209-RA 462 CG2209-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG2209-RA 752 CG2209-RA 61..519 17..475 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13022258..13022716 17..475 2295 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:57:09 has no hits.

BO28480.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-27 10:25:20 Download gff for BO28480.complete
Subject Subject Range Query Range Percent Splice Strand
CG2209-RA 61..519 17..477 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:28 Download gff for BO28480.complete
Subject Subject Range Query Range Percent Splice Strand
CG2209-RA 61..519 17..477 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:39 Download gff for BO28480.complete
Subject Subject Range Query Range Percent Splice Strand
CG2209-RA 61..519 17..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:39 Download gff for BO28480.complete
Subject Subject Range Query Range Percent Splice Strand
X 13022258..13022716 17..477 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:28 Download gff for BO28480.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12916291..12916749 17..477 99   Plus

BO28480.pep Sequence

Translation from 16 to 493

> BO28480.pep
MPVLKLNAYFTKFFPSSMVRSKELVRRRYSMKVAQVRRSYNIKFNEDPEF
ECDATVTNMPQSLKTMIKRKLLSKRVIGSFRLRFHSNSFKKRLEITATIT
NPTVPSDTDLAPEDEQLYELYICSSQGQLLGKIPFLESDYRRAAREAIDF
LAFASFLDH

BO28480.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG2209-PA 153 CG2209-PA 1..153 1..153 777 100 Plus