BO28490.complete Sequence
649 bp assembled on 2011-06-29
GenBank Submission: KX798017
> BO28490.complete
GAAGTTATCAGTCGACATGCTTTTAATAAGGAGTCTAGTAATTGTGTTTT
TAGTAGCGATAAGCGAGTTCGATCGAAACTTTGCCATAAACCATGACAAT
GCTGGAATAGTTCTAAGGGAAATAAACAAGAGAAGAGATCGCCATGGAGT
CCCAAAATTGACATTGGACAACGTGCTCAGTAAGGGATGCCAAAGTTATG
CTTGGAAACTGTCCAAGTCGGCGACTCTTAACTATTCGGACCCCACTAAC
AAGGATTACACAGAAAGCATCTGCAGATTTGAAGTAAAGAGGGGAGCACT
GTCGAGATGTGTCAAGAACTGGTATAATGGAAGGAAGTTCGATATTTTAG
ACCCCAAGGCTAAAGATTTTACTGCCATGATTTGGAGGTCGTCCGTTTCC
TTGGGATATGGCGACGCTAACATAAATGCTCTTCAAGGGGTTTTCGTGGT
CAGATATACTCCACCTGGGAATGTGAAAGGATTATACACGGATAATGTTC
CTCCCAGGAAAAGAAAACAAAAGAAAAAAAAGAGGGAAAACAAACAAAAA
GAAGACTGTGCGAGTCGTCAGGATAATCGATATGTCTTATTGTTGTCCAT
TCTTTCCTTGGTGTCTACTAATTGGCAAAGTGCAAGCTTTCTAGACCAT
BO28490.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31286-RB | 618 | CG31286-PB | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31286-RB | 1834 | CG31286-RB | 91..705 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6641621..6641842 | 205..426 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 6641426..6641565 | 66..205 | 700 | 100 | Plus |
| 3R | 32079331 | 3R | 6641907..6642032 | 427..552 | 630 | 100 | Plus |
| 3R | 32079331 | 3R | 6642084..6642162 | 553..631 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 6641322..6641372 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:34:40 has no hits.
BO28490.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-29 12:27:16 Download gff for
BO28490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31286-RB | 91..705 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:28 Download gff for
BO28490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31286-RB | 91..705 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:25 Download gff for
BO28490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31286-RB | 91..705 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:25 Download gff for
BO28490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6641907..6642032 | 427..552 | 100 | -> | Plus |
| 3R | 6642084..6642162 | 553..633 | 97 | | Plus |
| 3R | 6641322..6641372 | 17..67 | 100 | -> | Plus |
| 3R | 6641428..6641565 | 68..205 | 100 | -> | Plus |
| 3R | 6641622..6641842 | 206..426 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:28 Download gff for
BO28490.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2467806..2467884 | 553..633 | 97 | | Plus |
| arm_3R | 2467344..2467564 | 206..426 | 100 | -> | Plus |
| arm_3R | 2467044..2467094 | 17..67 | 100 | -> | Plus |
| arm_3R | 2467150..2467287 | 68..205 | 100 | -> | Plus |
| arm_3R | 2467629..2467754 | 427..552 | 100 | -> | Plus |
BO28490.pep Sequence
Translation from 16 to 649
> BO28490.pep
MLLIRSLVIVFLVAISEFDRNFAINHDNAGIVLREINKRRDRHGVPKLTL
DNVLSKGCQSYAWKLSKSATLNYSDPTNKDYTESICRFEVKRGALSRCVK
NWYNGRKFDILDPKAKDFTAMIWRSSVSLGYGDANINALQGVFVVRYTPP
GNVKGLYTDNVPPRKRKQKKKKRENKQKEDCASRQDNRYVLLLSILSLVS
TNWQSASFLDH
BO28490.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31286-PB | 205 | CG31286-PB | 1..205 | 1..205 | 1072 | 100 | Plus |
| CG31482-PA | 195 | CG31482-PA | 1..159 | 1..163 | 215 | 31 | Plus |
| CG32313-PB | 182 | CG32313-PB | 5..164 | 8..164 | 188 | 34.1 | Plus |
| CG32313-PA | 181 | CG32313-PA | 5..163 | 8..164 | 187 | 34.7 | Plus |
| CG4270-PA | 170 | CG4270-PA | 35..170 | 32..165 | 163 | 35.5 | Plus |
