BO28495.complete Sequence
1024 bp assembled on 2011-09-14
GenBank Submission: KX795582
> BO28495.complete
GAAGTTATCAGTCGACATGGGAAGAAATTTCCTTCGTCTGCCCAGTGTGA
GTGGTAGAAGCTCATTCGTATATTCCATAGTCGCCTGTTCAAATCTTCCC
AAGCGACGGAGCATTGTGCTCAGTTTTGGCCACATTATGACCGAGAACAT
GACGCTCGAACAGCTGTCCGCAAATAAGTGCTTCGAGGGCGAGCAACGCG
TGTATCGCCATCGCTCGGACACCTTGAAGTGCGACATGACCTTTGGCGTC
TTCCTGCCGCCGGCCGCTTTGGAGGGTAAACCGTGTCCGGTGCTGTTCTT
CCTCAGCGGACTGACCTGCACGCATGAGAACTTCATCCAGAAGAGCGGAT
TCCAGCAGCACGCCGCCCGCCACAACCTGATCGTCGTCAATCCGGACACT
TCGCCCAGGGGCGTGGAAATTGCCGGCCAAGATGATGCATACGACTTTGG
AAGCGGGGCTGGATTCTATGTGGATGCAAAGGAGGAGCCGTGGTCGAAGC
ACTACAAGATGTACAGCTATGTGACCCAGGAGCTGGTGGATGTGGTCAAT
GCCAATCTGCCCGTGGTTCCCGGTAAACGCGGTATATTCGGCCACAGTAT
GGGCGGCCACGGAGCCCTGATCTGCGCGCTTAAGAATCCCGGGCTGTACC
AGTCGGTGTCCGCTTTTGCGCCGATTGCCAATCCCACCGAGTGCCCGTGG
GGCAAGAAGGCCTTTGCCGGCTATCTGGGCTCCAATCCGGATGACTGGGC
CCTGTGGGATGCCACGCATCTGGTGTCGCAGTACGAGAGCACTCCGCAGG
AGCTCTTCATCGACCAAGGTGCAGCAGACAACTTCCTGGCCGGCAAGCAG
CTGCTGCCGGAGAACCTGCTGGCTGCCGCAGATGGCAACGATCACATCCA
GACCATCTTCAAGCAGCGCGAGGGATACGATCACAGCTACTTCTACATCG
CCACGTTCGTCGCCGAACACATCGCCTACCATGCCGCCCTGCTCACAGCT
TCCGCTGCAAGCTTTCTAGACCAT
BO28495.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-RB | 993 | CG4390-PB | 1..990 | 17..1006 | 4935 | 99.9 | Plus |
| CG4390-RA | 861 | CG4390-PA | 1..858 | 149..1006 | 4275 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-RB | 1141 | CG4390-RB | 56..1045 | 17..1006 | 4935 | 99.9 | Plus |
| CG4390-RA | 1006 | CG4390-RA | 50..910 | 146..1006 | 4290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20056514..20057376 | 1006..144 | 4300 | 99.9 | Minus |
| 3R | 32079331 | 3R | 20059567..20059695 | 145..17 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:14:12 has no hits.
BO28495.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 11:59:15 Download gff for
BO28495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 71..1060 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:33 Download gff for
BO28495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 71..1060 | 17..1008 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:21 Download gff for
BO28495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4390-RB | 56..1045 | 17..1008 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:21 Download gff for
BO28495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20056511..20057374 | 146..1008 | 99 | <- | Minus |
| 3R | 20059567..20059695 | 17..145 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:33 Download gff for
BO28495.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15882233..15883096 | 146..1008 | 99 | <- | Minus |
| arm_3R | 15885289..15885417 | 17..145 | 100 | | Minus |
BO28495.pep Sequence
Translation from 16 to 1024
> BO28495.pep
MGRNFLRLPSVSGRSSFVYSIVACSNLPKRRSIVLSFGHIMTENMTLEQL
SANKCFEGEQRVYRHRSDTLKCDMTFGVFLPPAALEGKPCPVLFFLSGLT
CTHENFIQKSGFQQHAARHNLIVVNPDTSPRGVEIAGQDDAYDFGSGAGF
YVDAKEEPWSKHYKMYSYVTQELVDVVNANLPVVPGKRGIFGHSMGGHGA
LICALKNPGLYQSVSAFAPIANPTECPWGKKAFAGYLGSNPDDWALWDAT
HLVSQYESTPQELFIDQGAADNFLAGKQLLPENLLAAADGNDHIQTIFKQ
REGYDHSYFYIATFVAEHIAYHAALLTASAASFLDH
BO28495.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4390-PB | 330 | CG4390-PB | 1..330 | 1..330 | 1763 | 100 | Plus |
| CG4390-PA | 286 | CG4390-PA | 1..286 | 45..330 | 1541 | 100 | Plus |
