BO28501.complete Sequence
715 bp assembled on 2011-07-13
GenBank Submission: KX799025
> BO28501.complete
GAAGTTATCAGTCGACATGGACAAGGATGCGTTTACATTACAGGCCATAC
GGCAGGACCTTATCGATAACAATCTGCAGGCTAAGGCAATAATACACGAC
ATCCTGAACAGCCGCACCTCCATCGCCGAACTCGAGGAGCTGAACGAAGC
GGGCCGCTCCAAACTGTCTGCTATCCGCAAAAGCATCGAGCGGCTGGACG
ACTGGGCGCGGGACACGGCAGACTCTGCGCTGGCCAATGAAGTGGACGAC
CACCGTGATCAGTTCTCCAAAACGCTGCAGGCGTTCCGAAAAGCAAACGT
GTCCACGATGCTGGAGATCGAGAAGGCCAATCGGGAGGAGTTAATGGCCA
TTACCGGCGAGAGTGAGCTACGCCAACGAACCACAACACGGGCGCGGCAC
AACCAGGGCAGTCTGGTTTCGCAGGAGAACGACGTGACCGAGAAGATGCT
GGCTATATCGCGGCACCTCTCGGAGACCACCCAGAAGAGCGCCATCACCC
TGGAAACGCTCGTGGCCTCGTCGCAAAATGTGGAGGCCACCAGCGACGAA
CTGCACCACACGGCCGGCAGCATTAGCATGTCCGGCAAGCTGCTCAAAAA
GTACGGACGACGCGAGTGCACTGACAAAATGCTGCTCTTCTTCGCCTTCT
CCTTGTTCCTCGCCTGTGTCTTTTACATCGTCCAAAAGCGACTCTTCGCA
AGCTTTCTAGACCAT
BO28501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2023-RA | 684 | CG2023-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
| CG2023-RB | 684 | CG2023-PB | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2023-RA | 2426 | CG2023-RA | 61..744 | 14..697 | 3420 | 100 | Plus |
| CG2023-RB | 953 | CG2023-RB | 89..772 | 14..697 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5823708..5824307 | 697..98 | 3000 | 100 | Minus |
| 3R | 32079331 | 3R | 5824360..5824444 | 98..14 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:48:23 has no hits.
BO28501.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:06 Download gff for
BO28501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2023-RA | 64..744 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:07 Download gff for
BO28501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2023-RA | 64..744 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:51 Download gff for
BO28501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2023-RB | 92..772 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:51 Download gff for
BO28501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5824361..5824441 | 17..97 | 100 | | Minus |
| 3R | 5823706..5824307 | 98..699 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:07 Download gff for
BO28501.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1649428..1650029 | 98..699 | 99 | <- | Minus |
| arm_3R | 1650083..1650163 | 17..97 | 100 | | Minus |
BO28501.pep Sequence
Translation from 16 to 715
> BO28501.pep
MDKDAFTLQAIRQDLIDNNLQAKAIIHDILNSRTSIAELEELNEAGRSKL
SAIRKSIERLDDWARDTADSALANEVDDHRDQFSKTLQAFRKANVSTMLE
IEKANREELMAITGESELRQRTTTRARHNQGSLVSQENDVTEKMLAISRH
LSETTQKSAITLETLVASSQNVEATSDELHHTAGSISMSGKLLKKYGRRE
CTDKMLLFFAFSLFLACVFYIVQKRLFASFLDH
BO28501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2023-PA | 227 | CG2023-PA | 1..227 | 1..227 | 1119 | 100 | Plus |
| CG2023-PB | 227 | CG2023-PB | 1..227 | 1..227 | 1119 | 100 | Plus |
