BO28502.complete Sequence
2974 bp assembled on 2011-09-21
GenBank Submission: KX799111
> BO28502.complete
GAAGTTATCAGTCGACATGTCACTTGCCTCGAGGACGAGTGTTAAGTCAG
GCGGCAGCGAAGTGGACTTAAGGCAACGGAATGCCAGCATCCGGAACCTC
TTCGCCCCCTCGTCGGCTGAGTTGGCCAAAAAAAAGGAAGCTCGTCAGAG
GAGCCGCAGCCAGAGCAGCTTTTCGCTCCAGAGGGCCAGCAGCCAGGATG
ACGGGATTGGTAATGGTATGGGAATGGGGCTTGGGAGCAAGATGGGCAGC
CAGATGGGCCTGCCCAACTCCAAGAGCTTCGATGATTACGCTCTGGGCAT
AAATCAATTGCCAATGACTGCGAATCAATCGGCAGTGAGACAATACAATG
GCCAGGACCATAACGTGCTGGGCTCAAGTCCCTATGCACCGGCTTCTACA
AGGGCAACGGCATTGGTAATTCCCAGGACATCGCACAATGGCTGCCATCA
GAGTGCATTTGAATTGGCAATGAGCCGGACTCCATCGGAGCACAAAAACT
GGAAGTCGACGAGCCAGCTGGAAAATTTTATTAACAGCAACGAGAAGCTG
CAGCAGGAGCAGTGGCAGCAGCACCAGCAGCAGGACACTTCTGTTGACTT
TGGTAATGAAATGACCTGGGGCAAATCTGCTGAGAAATCGCTGCCATTGA
ATCACCTGGTGCAAGAAGAAGGATTTTCCCGAGACGACCAGTGGGATTTG
GACTTTCAGACGGAGCAGCGCGAAAGTTTGCAGAGCCAAAGCTATCGACC
GGCGGTCGCAGCGGCAGCTCAATCGACGCCGTTGGCACAGCGCCTTCAGC
GCTTTCGATATCGCCAGCAATTGCAGTTGCAGCAAGAGCCGCATCAGCAA
CAGCAACAGCAACAGCAACAGCAGCAGCAACAACAATCGACTGCTGATAT
CGACGTTTACGATAGCCCCTTTAACGGCCAGTTATCAGCTGAACGAATAG
GCGTAGCCAATTGGCGGAGGGGGAACGTCGAAGGGCCCATTGGCGGGAGA
GCTCCAGTTGAGGCTGAGTACTCAGCGGAGCAGGAGGAGCTGCCGCCGGA
TCGAGTGCTATATCCAGACTCGGAACCGGAGGAAGAGGAGGCAGCGCCAC
GACGCCGTGTTGTGATCAGGCGCCGCATAGTGCGCACCAGTCGCACCGCT
TCACAAGATCCACAGACTCAAACTGCAGAGGTTGTTCCAAAATCCTCCAA
CGATAGCTCAACTCCTGCCGAGATCAACGGCCGCAATCTTGGCTGGCTGA
CCAGACTGCGCAGCTTTGGATCGATCAATAGAAAACACCAGGAGACCGCC
GCACCACCAAAAGGCGGCCAGCAAAAAGCCATTTCTGCTGCAAGCAACAA
CAGTTGCAACACCAATCCCATCATGGCCGTCCTGCGTACTATGAAATTAA
AGGAGCGACTGGTCATCAGTCTGGGTGCCACCCTCGTCCTGCTCACCCTT
CTGCTTATCGTCGATGTGCAGATGGACTTCGGTGTGGCCAATCGCCACCT
CCTTCAGCAACAGCACCAAAAGATCCGACTGGGCAACGACTACGATGGTG
GCACGGGTGGCGGTGGAATGCTGCACGAGTTCAAGCGCAAATTCCTGCAG
AAGAGCAACGCCTCGGGCTCCAAGGAGGCATCCACGCAGGCGGGGGCGAG
CCAGAGTGGCGGGGCGACCAGTGGTCAGGATGCGGCTGCCGGAGCTTCGG
GCGGAGCAGCCGGACCCGGCACATCAAGGAGCACATCCACGAGGAAGCCC
ACACCACACGATCGCTATGCGGATCTGCAAAAGCACCTGCTTAGCGATGA
GTACTCGCATGTGATTGTGGACAATGCGCCGGATGTGAGCAGGGACAATC
CCACGCTGGCCGAGATGCTGCACCGCAAGGCCAGTGCAAATGCCAGCAAT
TTGGAGCGCTTCCAATTGCGCATCACGAAGAAGGAGCTGTACGGCGAGCA
GGACACTCTGGTGGATGCGGTGTTACGTGACATGATCAAGCTGCCAATAC
AGCATGTTGTGCAAAAGGAGGGCGGCACCCAGCTGAAATTGATCATCGAG
TACCCAAACGATATCAAGGCCTTAATGAAGCCGATGCGGTTTCCGCGGGA
GCAGCAAACGTTGCCCAACCACTTCTACTTCACGGACTATGAGCGCCACA
ACGCCGAGATTGCCGCCTTCCACCTGGACAGGATCCTGGGATTCCGGCGT
GCCATGCCCGTTGCCGGTCGTACGCTGAACATTACGACCGAAATTTATCA
ACTGGCCGAGGAGAATTTATTGAAGACGTTCTTTGTTTCGCCATCGCTGA
ATTTATGCTTCCATGGCAAGTGCTCGTACTATTGTGACACCTCGCATGCC
ATTTGCGGCAATCCGGACATGTTGGAGGGCTCCTTCGCCGCCTTTCTGCC
CAACTTTGAGTCGGGCAATCGCAAGCTGTGGCGGCATCCCTGGCGACGGT
CCTACCACAAAAGGAAGAAGGCCCAATGGGAGACAGATGCCAATTATTGT
GCCCTGGTCCGTGATATTCCGCCCTACGACGATGGAAGGCGACTGTACGA
CCTTATGGACATGGCCGTCTTTGATTTTCTCACTGGCAACATGGATCGTC
ATCATTACGAGACATTCAAGGTCTACGGCAACGAGACTTTCCCCCTGCAT
TTGGACCACGGCCGTGGTTTCGGGCGGCCCTTCCACGACGAGCTCTCCAT
CCTGGCGCCGGTGCTGCAGTGCTGCCTGATACGCAAGTCGACGCTCGTCA
AGCTGCTAGACTTCCACAATGGTCCCAAGCCGCTGTCCCAGCTGATGAGC
GAATCCCTGAGCCAGGATCCCGTCAGTCCGGTGCTCTGGCAGCCGCACCT
GGAGGCGCTGGACCGCCGGACCGGCATCATCCTGCAAAGCATACGCGACT
GCATAAAGCGCAATCCGCCGGGCGACGTGGACGGATCCGAGACGGACGTC
TCCTCGGCAAGCTTTCTAGACCAT
BO28502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31145-RC | 2943 | CG31145-PC | 1..2940 | 17..2956 | 14700 | 100 | Plus |
| CG31145-RD | 2748 | CG31145-PD | 1..2744 | 17..2760 | 13720 | 100 | Plus |
| CG31145-RF | 1587 | CG31145-PF | 1..1584 | 1373..2956 | 7920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31145-RC | 4524 | CG31145-RC | 482..3421 | 17..2956 | 14700 | 100 | Plus |
| CG31145-RD | 3519 | CG31145-RD | 482..3225 | 17..2760 | 13720 | 100 | Plus |
| CG31145-RB | 2595 | CG31145-RB | 276..2493 | 739..2956 | 11090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23626597..23627462 | 1605..740 | 4330 | 100 | Minus |
| 3R | 32079331 | 3R | 23631486..23632186 | 741..41 | 3505 | 100 | Minus |
| 3R | 32079331 | 3R | 23622371..23622651 | 1884..1604 | 1405 | 100 | Minus |
| 3R | 32079331 | 3R | 23611893..23612139 | 2425..2179 | 1235 | 100 | Minus |
| 3R | 32079331 | 3R | 23606854..23607049 | 2956..2761 | 980 | 100 | Minus |
| 3R | 32079331 | 3R | 23607525..23607665 | 2760..2620 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 23616198..23616325 | 2009..1882 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 23608368..23608482 | 2620..2506 | 575 | 100 | Minus |
| 3R | 32079331 | 3R | 23614376..23614470 | 2182..2088 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 23608717..23608801 | 2508..2424 | 425 | 100 | Minus |
| 3R | 32079331 | 3R | 23615126..23615207 | 2090..2009 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:53:18 has no hits.
BO28502.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 17:40:13 Download gff for
BO28502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RC | 479..3418 | 17..2958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:46 Download gff for
BO28502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RC | 482..3421 | 17..2958 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:53 Download gff for
BO28502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31145-RC | 482..3421 | 17..2958 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:53 Download gff for
BO28502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23622371..23622649 | 1606..1884 | 100 | <- | Minus |
| 3R | 23606850..23607049 | 2761..2958 | 99 | <- | Minus |
| 3R | 23607525..23607665 | 2620..2760 | 100 | <- | Minus |
| 3R | 23608369..23608481 | 2507..2619 | 100 | <- | Minus |
| 3R | 23608719..23608799 | 2426..2506 | 100 | <- | Minus |
| 3R | 23611893..23612136 | 2182..2425 | 100 | <- | Minus |
| 3R | 23614377..23614469 | 2089..2181 | 100 | <- | Minus |
| 3R | 23615128..23615206 | 2010..2088 | 100 | <- | Minus |
| 3R | 23616198..23616322 | 1885..2009 | 100 | <- | Minus |
| 3R | 23626597..23627460 | 742..1605 | 100 | <- | Minus |
| 3R | 23631486..23632186 | 41..741 | 100 | <- | Minus |
| 3R | 23632505..23632528 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:46 Download gff for
BO28502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19432572..19432771 | 2761..2958 | 99 | <- | Minus |
| arm_3R | 19433247..19433387 | 2620..2760 | 100 | <- | Minus |
| arm_3R | 19434091..19434203 | 2507..2619 | 100 | <- | Minus |
| arm_3R | 19434441..19434521 | 2426..2506 | 100 | <- | Minus |
| arm_3R | 19437615..19437858 | 2182..2425 | 100 | <- | Minus |
| arm_3R | 19440099..19440191 | 2089..2181 | 100 | <- | Minus |
| arm_3R | 19440850..19440928 | 2010..2088 | 100 | <- | Minus |
| arm_3R | 19441920..19442044 | 1885..2009 | 100 | <- | Minus |
| arm_3R | 19448093..19448371 | 1606..1884 | 100 | <- | Minus |
| arm_3R | 19452319..19453182 | 742..1605 | 100 | <- | Minus |
| arm_3R | 19457208..19457908 | 41..741 | 100 | <- | Minus |
| arm_3R | 19458227..19458250 | 17..40 | 100 | | Minus |
BO28502.pep Sequence
Translation from 16 to 2974
> BO28502.pep
MSLASRTSVKSGGSEVDLRQRNASIRNLFAPSSAELAKKKEARQRSRSQS
SFSLQRASSQDDGIGNGMGMGLGSKMGSQMGLPNSKSFDDYALGINQLPM
TANQSAVRQYNGQDHNVLGSSPYAPASTRATALVIPRTSHNGCHQSAFEL
AMSRTPSEHKNWKSTSQLENFINSNEKLQQEQWQQHQQQDTSVDFGNEMT
WGKSAEKSLPLNHLVQEEGFSRDDQWDLDFQTEQRESLQSQSYRPAVAAA
AQSTPLAQRLQRFRYRQQLQLQQEPHQQQQQQQQQQQQQQSTADIDVYDS
PFNGQLSAERIGVANWRRGNVEGPIGGRAPVEAEYSAEQEELPPDRVLYP
DSEPEEEEAAPRRRVVIRRRIVRTSRTASQDPQTQTAEVVPKSSNDSSTP
AEINGRNLGWLTRLRSFGSINRKHQETAAPPKGGQQKAISAASNNSCNTN
PIMAVLRTMKLKERLVISLGATLVLLTLLLIVDVQMDFGVANRHLLQQQH
QKIRLGNDYDGGTGGGGMLHEFKRKFLQKSNASGSKEASTQAGASQSGGA
TSGQDAAAGASGGAAGPGTSRSTSTRKPTPHDRYADLQKHLLSDEYSHVI
VDNAPDVSRDNPTLAEMLHRKASANASNLERFQLRITKKELYGEQDTLVD
AVLRDMIKLPIQHVVQKEGGTQLKLIIEYPNDIKALMKPMRFPREQQTLP
NHFYFTDYERHNAEIAAFHLDRILGFRRAMPVAGRTLNITTEIYQLAEEN
LLKTFFVSPSLNLCFHGKCSYYCDTSHAICGNPDMLEGSFAAFLPNFESG
NRKLWRHPWRRSYHKRKKAQWETDANYCALVRDIPPYDDGRRLYDLMDMA
VFDFLTGNMDRHHYETFKVYGNETFPLHLDHGRGFGRPFHDELSILAPVL
QCCLIRKSTLVKLLDFHNGPKPLSQLMSESLSQDPVSPVLWQPHLEALDR
RTGIILQSIRDCIKRNPPGDVDGSETDVSSASFLDH
BO28502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31145-PC | 980 | CG31145-PC | 1..980 | 1..980 | 5110 | 100 | Plus |
| CG31145-PD | 915 | CG31145-PD | 1..915 | 1..915 | 4763 | 99.9 | Plus |
| CG31145-PF | 528 | CG31145-PF | 1..528 | 453..980 | 2786 | 100 | Plus |
| CG31145-PB | 528 | CG31145-PB | 1..528 | 453..980 | 2786 | 100 | Plus |
| CG31145-PA | 528 | CG31145-PA | 1..528 | 453..980 | 2786 | 100 | Plus |
