BO28508.complete Sequence
1123 bp assembled on 2011-07-13
GenBank Submission: KX795197
> BO28508.complete
GAAGTTATCAGTCGACATGTGTGCACGCAAGCGGACGGAGGGCAATCTTT
GCCGTCGCCATAAAAGTGGCTGCAGTGCAAACCAATATAAACTGTGTGAA
CCGGATGAGGAGTGCATCCGACTTAAGGATTGCCGACCCATATATTACAA
TGTGAGGAGAAACAGATTGTCGGGGTCCGCAAAAGTGAATATATCGCAGA
CAAGAATGTGTGGCGTGAGTGTTCGAGACCGGAAACGTTACAAAAGGATT
TATATCTGCTGTCCCAAGCCGGCAAACACCTTGCCAAGCTATCCGGATTG
TGGGAAGCCACAAACGACTAACCGTGTTATAGGCGGCACGGAGCCGAATC
TCAACGAATATCCGTGGCTGGCCATGCTTCTATATCGAAATCGTAGTGCC
TTCAACCCGGATCGGGAGCTAGTCCCCAGTTGTGGTGGCTCCCTGATTAA
CACTCGCTATGTCCTGACCGCAGCCCACTGTGTAACCGATACGGTCTTGC
AAATCCAACGCGTCCGCCTGGGCGAGCACACAACGTCCCATAACCCGGAC
TGCATCAGCCGGGGCGCACGAATCGTTTGCGCTCCCACACATCTGGACAT
CGACGTGGAGTCGATCACATCGCATAATGACTACGATCCAGCCAATTACA
CCTTTCGGAACGACATCGCCCTGGTGCGACTCAAAGAGCCAGTGCGATAT
ACGATGGCTTACTATCCGATTTGCGTTCTGGACTACCCAAGGTCACTGAT
GAAATTCAAGATGTACGTGGCTGGATGGGGAAAAACGGGCATGTTCGACA
CTGGGAGCAAGGTGCTGAAACACGCTGCCGTCAAGGTAAGGAAACCAGAA
GAGTGCTCGGAAAAGTACGCACACCGGCATTTCGGGCCCAGATTCCAGAT
ATGCGCCGGCGGCTTGGATAACCGGGGCACCTGCGACGGCGACTCCGGCA
GTCCATTGATGGGCACATCGGGTCGCAGCTACGAGACAATCACGTTCCTG
GCCGGCATCACTTCATACGGAGGTCCTTGCGGCACGATTGGCTGGCCGAG
TGTTTTCACACGAACGGCGAAGTTTTACAAATGGATACGGGCACACTTAA
GGCCCGCAAGCTTTCTAGACCAT
BO28508.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31220-RB | 1092 | CG31220-PB | 1..1089 | 17..1105 | 5445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31220-RB | 1421 | CG31220-RB | 276..1364 | 17..1105 | 5445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19649448..19650057 | 87..696 | 3050 | 100 | Plus |
| 3R | 32079331 | 3R | 19650120..19650529 | 696..1105 | 2050 | 100 | Plus |
| 3R | 32079331 | 3R | 19648841..19648910 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1360 | 3409 | 1360 1360 3409bp | 3309..3374 | 27..89 | 187 | 80.3 | Plus |
BO28508.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 12:52:51 Download gff for
BO28508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31220-RB | 213..1301 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:53 Download gff for
BO28508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31220-RB | 213..1301 | 17..1107 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:25 Download gff for
BO28508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31220-RB | 276..1364 | 17..1107 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:25 Download gff for
BO28508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19648841..19648910 | 17..86 | 100 | -> | Plus |
| 3R | 19649448..19650057 | 87..696 | 100 | -> | Plus |
| 3R | 19650121..19650529 | 697..1107 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:53 Download gff for
BO28508.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15474563..15474632 | 17..86 | 100 | -> | Plus |
| arm_3R | 15475170..15475779 | 87..696 | 100 | -> | Plus |
| arm_3R | 15475843..15476251 | 697..1107 | 99 | | Plus |
BO28508.pep Sequence
Translation from 16 to 1123
> BO28508.pep
MCARKRTEGNLCRRHKSGCSANQYKLCEPDEECIRLKDCRPIYYNVRRNR
LSGSAKVNISQTRMCGVSVRDRKRYKRIYICCPKPANTLPSYPDCGKPQT
TNRVIGGTEPNLNEYPWLAMLLYRNRSAFNPDRELVPSCGGSLINTRYVL
TAAHCVTDTVLQIQRVRLGEHTTSHNPDCISRGARIVCAPTHLDIDVESI
TSHNDYDPANYTFRNDIALVRLKEPVRYTMAYYPICVLDYPRSLMKFKMY
VAGWGKTGMFDTGSKVLKHAAVKVRKPEECSEKYAHRHFGPRFQICAGGL
DNRGTCDGDSGSPLMGTSGRSYETITFLAGITSYGGPCGTIGWPSVFTRT
AKFYKWIRAHLRPASFLDH
BO28508.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31220-PB | 363 | CG31220-PB | 1..363 | 1..363 | 1995 | 100 | Plus |
| CG16710-PB | 372 | CG16710-PB | 25..362 | 22..357 | 619 | 42 | Plus |
| CG10232-PD | 509 | CG10232-PD | 180..509 | 19..363 | 604 | 41 | Plus |
| CG31219-PB | 345 | CG31219-PB | 25..345 | 27..363 | 577 | 40.6 | Plus |
| CG18754-PB | 341 | CG18754-PB | 30..341 | 27..363 | 565 | 39.1 | Plus |
