BO28511.complete Sequence
940 bp assembled on 2011-09-14
GenBank Submission: KX796720
> BO28511.complete
GAAGTTATCAGTCGACATGGCACACGCCACGCCACAGGGCGTAAAGCTAT
TAAACGGATGGAAGCGTCCGGGTCGCTTTGACAAGGGTCTGGGAGCCCAG
CTGCCCGAGGCGTACAGGAAGTTCTGGCGCGAGTGGAAGCTGACGACCCC
GGCTGCGGTCCATTATATCCCCAAGGAGCAGCAGTGGGAACGAGATGAGG
TGACGCACGCCATCAAGCCGGTGCAGAACATCCCGCTGCCATTGATCGAT
ACGCCGGAATCGCACCGTGGCATCTGGGGTGGCGAGGCCGTGATCAAGGG
CTTTCAGAAACGCGAGCAAACAAAGCGTCGCGTGCCGCACTTTTGGGTAC
CAAATCTTAGGCGTTCGGTGGTCCATAGTCATGTGCTGGACTGCTACATG
TCCGTGGTGGTGACGGAACGCACGCTGGAGCAGATCCATGAATGTCATGG
CTTTGATCACTACCTCCTCAAGAATCGTGCCTGCGATCTTCGCTCCGCTT
TGGCTCTGAAACTCAAGCGAGAGGTGCTTCAGGCCCTGCAGAACGGTGTT
CCAGCCCTCGCCGACGAGCCCGAACGCCAACAGGAAGTGCTTAAGGAATA
CCGCCGCTATCTGGAACCATATACGCCCGAGGAAATCGATTGGTACGGCC
ATACCTATTTGGAGGCCATACGCAAGCTGCAAAAGCAGCTGCGCGAAGCG
GAAAAAGTGGTGCCGCATAAGTTGGAGTTCCGCGGAAAGCTTATCGAGCA
GCTGCGCCAGGCGGGGATCAGCGAAGCGGGAAAGCTGGAGAAGCCGGATG
CATTAGCAGCAGAATCGTCGGTCGAACACAAGGATTCGGATATCGAAGCG
CTTACAAAGCTGGAATCCTCCCCCTCTTCCAGTTGGCTGTCTAAAATCAA
TCCTTTCGGCAAGAAAGAAACCGCAAGCTTTCTAGACCAT
BO28511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL28-RB | 909 | CG3782-PB | 1..906 | 17..922 | 4515 | 99.9 | Plus |
| mRpL28-RA | 909 | CG3782-PA | 1..906 | 17..922 | 4515 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL28-RB | 1170 | CG3782-RB | 162..1067 | 17..922 | 4515 | 99.9 | Plus |
| mRpL28-RA | 1138 | CG3782-RA | 162..1067 | 17..922 | 4515 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4974274..4975101 | 35..862 | 4125 | 99.9 | Plus |
| 2L | 23513712 | 2L | 4975153..4975213 | 862..922 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:14:50 has no hits.
BO28511.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-14 11:59:17 Download gff for
BO28511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL28-RA | 160..1065 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:52 Download gff for
BO28511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL28-RA | 162..1067 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:33 Download gff for
BO28511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL28-RA | 162..1067 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:33 Download gff for
BO28511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4974137..4974157 | 17..37 | 100 | -> | Plus |
| 2L | 4974277..4975100 | 38..861 | 99 | -> | Plus |
| 2L | 4975153..4975213 | 862..924 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:52 Download gff for
BO28511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4974137..4974157 | 17..37 | 100 | -> | Plus |
| arm_2L | 4974277..4975100 | 38..861 | 99 | -> | Plus |
| arm_2L | 4975153..4975213 | 862..924 | 96 | | Plus |
BO28511.pep Sequence
Translation from 16 to 940
> BO28511.pep
MAHATPQGVKLLNGWKRPGRFDKGLGAQLPEAYRKFWREWKLTTPAAVHY
IPKEQQWERDEVTHAIKPVQNIPLPLIDTPESHRGIWGGEAVIKGFQKRE
QTKRRVPHFWVPNLRRSVVHSHVLDCYMSVVVTERTLEQIHECHGFDHYL
LKNRACDLRSALALKLKREVLQALQNGVPALADEPERQQEVLKEYRRYLE
PYTPEEIDWYGHTYLEAIRKLQKQLREAEKVVPHKLEFRGKLIEQLRQAG
ISEAGKLEKPDALAAESSVEHKDSDIEALTKLESSPSSSWLSKINPFGKK
ETASFLDH
BO28511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL28-PB | 302 | CG3782-PB | 1..302 | 1..302 | 1604 | 100 | Plus |
| mRpL28-PA | 302 | CG3782-PA | 1..302 | 1..302 | 1604 | 100 | Plus |
