BO28517.complete Sequence
2998 bp assembled on 2011-08-04
GenBank Submission: KX794826
> BO28517.complete
GAAGTTATCAGTCGACATGGACGACCTGTCGCAGGGCGACATTTGCCGCG
TGTGCAGATGCGAGGCACAGCCGGATAGGCCTCTTTTCTACCCGTGCATC
TGCACTGGATCGATCAAGTACATTCATCAGGACTGCCTGATGTTATGGAT
GCGCTACTCGCACAAGGAATACTGCGAGCTGTGCAGCTACAGCTTCAGCT
TTCAGCCCATCTATGCTCCGGATATGCCGCGAGTCCTGCCGATAAAGGAT
GTCCTTGTGGGACTGATGTCCGCCGTTTTGGAGGGCGCTCGCTGCTGGCT
TCATTACACCCTGGTCGGTTTGGCCTGGTTCGGAGTGGTGCCGCTGTCTG
CCTACAGGACCTATCGGTACCTCTTCCGGGCGAGCTCCTTCGATATGATT
CTCACGCTGCCCTTTGACATCTTCTCCGTTGAAAACCTGGCATCGGATGC
CTTTCGGGGCTGTTTTGTGGTCACATGCACACTTTTGTCCTTCATAGGAT
TGGTCTGGCTGCGCGAGCAGATCCTGCATGGCGGCGGACCCGATTGGCTG
GAGCGGGACGATGCCCCTCTACAGGCAGCGGCTGCTAATCCTGCGCCTGA
TCCCGCCGCCGAGGCAGCTCCACAGCCTCAGGACGACAACAACAATGCCG
ACGACAATGAAGCGCCGGCTCCAGCGGACAACGATGGGCAGGATGCCCAG
GCCCAGGATGCCGCACCAGCGGCTGCAGCTCCCGTCGTGGACGCCGATGC
CGATGAGCAGAATTGGAATCCCATGGAGTGGGATCGGGCTGCCGAGGAGC
TTACCTGGGAACGCCTGCTCGGACTCGATGGCTCGCTAGTTTTTCTGGAG
CACGTCTTCTGGATCATCTCACTGAACACCATGTTCATCTTCACCTTCGC
CTTTTGTCCCTACTGCGTGGGCAACTTCATTCTGAGCTCCATGGATCTTT
TGCAGCCCGAGAAACCACTGCTACACTTTCACGGCCTGATTACCACGCTA
TTTGGTTACTGCTGCATTGGATTGACCCTGGTGGTGCTGCACTTCTTCTC
CAGAGTTTTCCGCCTGCGGAGAGTCTGCTGGTTCATTGGATTGTGCTATA
TTGTGGTCAAGGTGTCGCTGCTGTCGGTGTTGGAGATCGGAGTACTCCCG
CTGATTTGCGGCTGGTGGCTGGACATTTGTTCGTTGCCCCTACTAGATGC
CAGCCTCAAGGATCGTAAAGAGAGTTTTAAGGCTGCTCCGGGCACCTCAC
TTTTTGTCCACTGGATGTTTGGCATGGTATACGTTTACTACTTCGCTGCG
TTTGTATCGTTGTTGCGCGAGGTGCTGCGACCGGGAGTGCTCTGGATATT
CCGCAATGTCAACGATCCTGACTTCAGTCCCATCCAGGAAATGATCCATG
TACCAATTGTGAGACACATCCGGCGGCTGGTCGCTTCGGCTATGATCTTT
GGATTTGCAGTGCTCTTGATGCTCTGGCTGCCCATTAGAATTCTGCAGGT
GGTTTGTCCGGACTTCTTGCCATATGCACTTAGTGGCGATTCAGCGGTTA
ACTTGCAATTGCTGCTCTTACAAATCGTTTTGCCGGGCTTCTTCGAGCAG
ACCCAAACACGCATCTGGCTAAAGGGCTTGCTGCGCATTTGGTGCACAGC
GGTGGCCTGGTTGCTGGGCATACGAAGCTACCTGCTCCCAGCACCGGAGC
CGGAACCGGAAATTCCCGCTGCTGGAGAAGAAGGCGTGGAGAATGCCGCT
GGCGAAAATGAAAACCAGGAAGGTGAGGCAGCGGATGCGGCAGCCCAACC
ACCAGCACCACCTCCTCCACCGCCACCGCCAGTGGAACCGGCGCCGGCAC
CACGAAACCTTGCCGCCGCCCATCAGGCCATCATGCAACGGGATGCACCC
GTGGGATTCCAGCCGTACGACAAGCCATCGCTGTTCGCTTTACGTTTGTG
TGCCCTGTTGGCACTCATGTGTTTGTCCATCGTTTGTGCTGCCATGTTGA
CGCTCACGGTTCCAGTCTACATCGGTCGGCGGCTGATGTTGATCTGGTCC
TCCCAGCCGGATGAGAAGGCAGCTGGAGCGGCAGCCGCAGAAGGAGCGGG
CGAAGTGGTTGAAAATCTAGATCCAATCGATCCGGAAGGAGCCAGAAAGA
ACGAGCGACTACTGCGCTCGCATGAGCTGTACACCGCTGAGCTTGGTGGT
TACCTGTGCTGGATTGTCTGCCGGGTAGTAGCTGCGGTGGTCACCCTGCT
GCCACAAGGCCGCGCGGCTATTGTCGACAAGATAAAGCACTGGGTCCGAG
TGGCATTGCAATATGCCCTGCCCGTTCTAACACTCCTGGGAATCTTCGTG
CTGGTTCCGTTGCTGATTGGATTGCTGATCGAGTTGGCGGTGGTCATTCC
CCTACGCGTTCCACTACGCAAGACACCAATCCACTTCCTATGGGAGGATT
GGGCGCTGGGAGTGCTCTACTGCAAGATAGCCATCGCCTTGACGATGATG
GGCCCAGATTGGCACTTGAAGCGTGCATTAGATCGAGCCTACATGGATGG
ATTGCGCGATTTCGACTTGAAGTTTGTGATGCGAGACTTGGCTGTGCCGG
TCGTTACTACCATTGGTCTGGCCCTGGCCATACCCTATGTCATGGCACAT
ATGATGTTTCCGATTTTCCTAGCGGACGCCTATGCTCAGCATGTCGTCGC
ACGGCTCGTGTATCCCGTAAGCTTCATTGTGGTGGGCAGCATATGCATCC
TTTTGTTCCAGATCGATCAGCTGAAGAAGCTCTATCTGTCCATCAAGGTG
GATAAGTACCTGGTGGGTCAGAGGCTGGTCAACTATGAGCACCGCAAGAA
GCAGCAACAGCAGCAGGAGGAGGAGAAGGAGCAACAGCGGGCGGCCCGGG
AATTAAGGGAGAACCAGGAGAGAGATCGGGAGCGAGAGCGGGAACAGTTG
GTCCAGGAGCTCGAGTTGGCTGAACTTCTGGCAAGCTTTCTAGACCAT
BO28517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1317-RD | 2967 | CG1317-PD | 1..2964 | 17..2980 | 14820 | 100 | Plus |
| CG1317-RC | 2967 | CG1317-PC | 1..2964 | 17..2980 | 14820 | 100 | Plus |
| CG1317-RB | 2967 | CG1317-PB | 1..2964 | 17..2980 | 14820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1317-RD | 3836 | CG1317-RD | 278..3241 | 17..2980 | 14820 | 100 | Plus |
| CG1317-RC | 3665 | CG1317-RC | 278..3241 | 17..2980 | 14820 | 100 | Plus |
| CG1317-RB | 3869 | CG1317-RB | 278..3241 | 17..2980 | 14820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2370106..2371662 | 1573..17 | 7785 | 100 | Minus |
| 3L | 28110227 | 3L | 2368642..2370048 | 2980..1574 | 7035 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:54:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6853 | 2838..2947 | 147 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6840 | 2832..2946 | 139 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6839 | 2838..2888 | 138 | 74.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1068..1141 | 2847..2920 | 136 | 64.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1133 | 2819..2888 | 135 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2364 | 2813..2888 | 134 | 65.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 865..1010 | 2740..2890 | 132 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2397 | 2830..2888 | 130 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6818 | 2838..2888 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2378 | 2830..2890 | 122 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..6877 | 2847..2890 | 121 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1145 | 2838..2888 | 120 | 70.6 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 633..723 | 2934..2848 | 120 | 63.7 | Minus |
BO28517.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:50 Download gff for
BO28517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1317-RC | 299..3262 | 17..2982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:10 Download gff for
BO28517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1317-RB | 278..3241 | 17..2982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:17 Download gff for
BO28517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1317-RB | 278..3241 | 17..2982 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:17 Download gff for
BO28517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2368640..2370048 | 1574..2982 | 99 | <- | Minus |
| 3L | 2370106..2371662 | 17..1573 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:10 Download gff for
BO28517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2368640..2370048 | 1574..2982 | 99 | <- | Minus |
| arm_3L | 2370106..2371662 | 17..1573 | 100 | | Minus |
BO28517.pep Sequence
Translation from 16 to 2998
> BO28517.pep
MDDLSQGDICRVCRCEAQPDRPLFYPCICTGSIKYIHQDCLMLWMRYSHK
EYCELCSYSFSFQPIYAPDMPRVLPIKDVLVGLMSAVLEGARCWLHYTLV
GLAWFGVVPLSAYRTYRYLFRASSFDMILTLPFDIFSVENLASDAFRGCF
VVTCTLLSFIGLVWLREQILHGGGPDWLERDDAPLQAAAANPAPDPAAEA
APQPQDDNNNADDNEAPAPADNDGQDAQAQDAAPAAAAPVVDADADEQNW
NPMEWDRAAEELTWERLLGLDGSLVFLEHVFWIISLNTMFIFTFAFCPYC
VGNFILSSMDLLQPEKPLLHFHGLITTLFGYCCIGLTLVVLHFFSRVFRL
RRVCWFIGLCYIVVKVSLLSVLEIGVLPLICGWWLDICSLPLLDASLKDR
KESFKAAPGTSLFVHWMFGMVYVYYFAAFVSLLREVLRPGVLWIFRNVND
PDFSPIQEMIHVPIVRHIRRLVASAMIFGFAVLLMLWLPIRILQVVCPDF
LPYALSGDSAVNLQLLLLQIVLPGFFEQTQTRIWLKGLLRIWCTAVAWLL
GIRSYLLPAPEPEPEIPAAGEEGVENAAGENENQEGEAADAAAQPPAPPP
PPPPPVEPAPAPRNLAAAHQAIMQRDAPVGFQPYDKPSLFALRLCALLAL
MCLSIVCAAMLTLTVPVYIGRRLMLIWSSQPDEKAAGAAAAEGAGEVVEN
LDPIDPEGARKNERLLRSHELYTAELGGYLCWIVCRVVAAVVTLLPQGRA
AIVDKIKHWVRVALQYALPVLTLLGIFVLVPLLIGLLIELAVVIPLRVPL
RKTPIHFLWEDWALGVLYCKIAIALTMMGPDWHLKRALDRAYMDGLRDFD
LKFVMRDLAVPVVTTIGLALAIPYVMAHMMFPIFLADAYAQHVVARLVYP
VSFIVVGSICILLFQIDQLKKLYLSIKVDKYLVGQRLVNYEHRKKQQQQQ
EEEKEQQRAARELRENQERDREREREQLVQELELAELLASFLDH
BO28517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1317-PD | 988 | CG1317-PD | 1..988 | 1..988 | 5212 | 100 | Plus |
| CG1317-PC | 988 | CG1317-PC | 1..988 | 1..988 | 5212 | 100 | Plus |
| CG1317-PB | 988 | CG1317-PB | 1..988 | 1..988 | 5212 | 100 | Plus |
| CG4080-PB | 617 | CG4080-PB | 38..93 | 5..60 | 194 | 51.8 | Plus |
| CG4080-PA | 617 | CG4080-PA | 38..93 | 5..60 | 194 | 51.8 | Plus |
