BO28520.complete Sequence
4628 bp assembled on 2011-08-23
> BO28520.complete
GAAGTTATCAGTCGACATGTACTCCGAGTGGGCCTCGCTGTCTGCCCAAA
TCACAGCCAACAGCTGCGGCGCCCAGTGCTTCAGTGTGCTCAACAAATTC
CCCGCCTCCGCCGGACGCGAAGTGGTCGTCTCCGTGGTCAAGCAGCTGGG
CACCAATCTGGGCATCACGCAGAATGCAGAGCCCAGTCACCTGGTCAAAG
ACGAAGAGGTAAAATGGTGCATGGACGTGATCTGCTTCGGACTTTCGCTT
CCTCTGCAGGAACACGAGACGATCAAGGATTGCGTGAATGTGTACTGCGA
GTGGCTGACGGCGCTGCATCCGCAGCCCAGGATCAGTGTACCGAAGCCGA
TATGCGAGGATGCCAATCTCTATGCTCGCCAGATCATCAATCACTTTCAC
AATCTGTTTGTGCCGCGCCAGGGCGAAAGTGCAGATACAATTAAACGGCA
GGCAGTGCTCTGCCATCGGGTGCTACGAACTCTGCAGCAAACTGCTCAGA
TATCGCAGCTAATGGATCGGCAGACGTGGGACACGCTGCTTCTCTTTCTG
CTGGCTATCAATGAGATCCTGCTGGCGCCGCCCACCGTCAAGGACGATGT
GGGCGATCAGCTGTGCGAGCGTGTGCTATCCGTGCTCTTCGAGGTCTGGC
TTCTGGCCTGCGTTCGCAGTTTTCCCTCACCGTCGATGTGGAAGACGCTG
CAGGAGTCGTGTGCCATGTGGCGACACCGTGTAGCCCTCGTGGATCAATG
GAATCGAGTGAACTTGGCACTAACCGCTCGCCTGCTGGAGTTCAGCTATG
GTCCTGCGTTTCCACAGCTCAAGAATGCCGACGAGGATGGCCAGCTGATA
CCAATTGGAATGTCCAACGACTGTGTGGCCCAGACTTGGTACCGCTTCCT
GCGTATGATTGGCAATCCCACGGCGCTCTGTTCACCACATATCATCAGCA
AATCATCACACTTTGTTCAGTGGGCGTTGACCCATGAAAAGGGCGCCGAG
ACGCATCAGCATCCCTGCCTGCAACAACTGCCGCAGATCTTCCTCAATGC
CATGAAGGGAATTTCCAGTCAAGTGGACGCTTTTCTAGGCTTGAGCAAGA
CCTCGCTTATTGGCCTCACCGGCGGTGGTGCACGCAACGCGATCAGCAGC
AGCAGCACCACCACCACCAATGCCGGCAGCACGGGAGGAACGGGATCGGG
AGATGGATCCGCTCCTGCTCCGCTGCCCACAACTCCCACGTCCACGTCGG
GTCCGCCGTCGGCGAGTAGCAGCATCAACTCTCTGCCGTTGACTTCGATG
GGAGCGGGTGTCGAGCTGGCCGTGGCCAGACCCAAATGCAACAGCATTCT
CCACGTATTCCACGAGTGGCTCTTCGAGGCGGCGCACATCGGAGGCGACA
CTTGGCGGCAAAATCGTAAAAAGCAAGCATGCGAGGCCAGTAAACGGCCA
TCGTCGATGATAATGGAGCACCGCAAGGGATCGATATCGTTGTCGCAGCC
CAACTCTCTGAACGATCCGCAATCGTTGCCACCCACGCTGACCATCGACA
AGTATGAGTCCGGCCGAGCCGAGGCCATTGGAACGCTGTGCAAGATCTTC
TGTGCAAAGAAGACGGGCGAGGAGATTCTGCCCGTCTATCTGGCCCGCTT
CTACATGGCATTGCAGCAGTGCCTGAAGATTACAGAGTCGCGGGAATGCG
ACGAGACGTTGGCCAGCATCCTGCTGCATTCGAGTGACCTGTTTCGCCTG
GACCTGGATGGGATTAATGTGCTGCTGCCCGGTTTCATTGCCGCCTTGGA
AATCGTACTGCCCGACAAGGACCTCAAGCTGAAGACGCAATCGATGGTCT
TTAATCGCACCGAATTGCGCCGTTCGGCGATTAACATCCTGCTGTCCATC
ATGGTGCTGCCGTTGCACTACCAAACGCTGCCCATTCGGGATTTGACCTG
CGAATCGAGCGAGAAAATGTTTACCTTCATCCAACTGAAGTCGCGGCTCA
TGAACATCTTGATGAATGCCCTGCAGGTCGAGACGGATGCCCAAAACACG
CACATGCTTCTGGGCGGCCTGCTGCTCTGCGTTCAGGATGCCGTCACCTT
CGAGGAGACGGAACTGGGCGGCGGCAATGCCAATCTCTCGCAGAACTCGA
GTGGTGTGCAGCATCATGACGCCAATCTACTGAGTTCGGCGTGCTCGGAG
CGTTCCGCTTCGCTGGTCAGCGCTGGCACAGCCAGCTTGGGCGGTCAGAC
GACGGCCACCATGGGAGCGGGATCGGGCTCCATTCGCGACACCGCCTCCG
CCCACGACTACCCCAGTCTGACCATATCCGATGACATGTCATTCGAGTTC
GGCCAGGAACTGGAAGGGGTGACCACCTATGATAATGCCCATGCTCTATT
TGTGCGCGCCACGTATTTGGTCTGCCATCGTCTGATCTCGTCGTGGAAGA
CGGATCTGAATGTTTCGCTGGCCGCCTTGGAGTTGCTGTCCGGCTTGGCC
AGGTTACATATCCGGGAAACAGACGCTCTAGAGTGCAAGCGGGCCGTGAA
GTGGATCTGTGACTATATATGCTACCAGTGCTCCCGTCCGCCGCCGGCGC
ATAGCAAGGATCTGCACAGCACCATTGTGGCGGCCTTTCAGTGCACCGCC
GCCTGGCTGATGCAGCATCCCTATTTGCTGCAGGACAAGGATTGCCTGCA
AACGGTCCTCGAGGTGGTTGAGCTGGGCATTTCGGGCACCAAGAGCCAGA
GCAAGGGCACCGATATACCCAAATTTAAGGACGAAAAGGAGCTAAAGCCC
GCCTCGATGAGAGTGCGAGATGCTGCTGAGAATCTGCTGACAATTATCCT
CGAGCAAGTGGGCTATTTCCCCAGCGAATGCGGTCCAGAGTCCATATCCT
CGCTATTGGATGAGCTGGCGCTCATGAAGCACTGCAACTCTATGGTGCCG
GCGGCGGCGGCCAGCAGTGAGCAGGCCATTGCCAAGTTTAAGTACTTTGT
GACCGAGAACTCCACCATATTGGCACTGCTCGAGGAGCCGTTGGGCAATG
ACCAGGATCCCCAACCCACAGTGACTCTGCTCATACGCGGTCCCTTTGGT
CGACATGCCTGGACCATGCAGTTGCGTCATCTGCCTCGCAGTAAGTCTGG
GATTAAGTACCATGCCATTAATCCTGGCAGGCCCATACCCATGAACGATG
TGACGCAACGGCTGGATAGCGAGCAAAAGAACTTTCCCGACGGCGTGGAC
AAAGTGCAACCGTGTGTGGCGGACTACTCTATACCCACCATCGAACAAAT
GCGCGAGCAATACGGCACTGCTGTCATACGGGAGCTGGAGTCGTTGCTGG
AGAACCAGAGCATTCACGAGAAACTGGCCTGGGCGGAGGCGGACACCAGT
GCGGATAGTTTGTCGCATGCCCAAGAATGTGTGCCGCCAACGGTGTGCCA
CGAGTTCCATGCGGCGCGTCTATTTCTCTCACATTTTGGTTTTCTGGGAT
TCGAGACGCGGAATCCACAGAATCCAGCTGAGGCACTGGGCAATCCGCCA
CAGCGACCGCTAATCGTGCTGGACACCAAGTCCGCAGCCTTCGCCGCCGA
TCTGGATCGTTTGGACAAGCTGAGTGCGAGGACGCACGACAGCGTTTATG
TGTTCTATGTGAAGAGTGGCCAAACGAGTGCCCAGCAGATTATCGCCAAT
ATGGGCGAGGAATCGTCTGCCAGCCATGATCCGCACTTCGCTAGCATGCT
GCAAACGCTGGGCTGGCCGGTTCAGGTTTCAGAACACTCTGGCTGGACGG
GCTTTGCCCACAACTCGTGGTCACTCAAGGGAACGCCCGAGGAGCAGCTA
AAGTCCACTGCCAACGAGCTGAACTATAATGGATCACAGAGGGTGCTCTA
CTGGGCGGATGTGTCATCGGAAATCGCCTTCGTGGTGCCCACGACATGGA
ATCTGCGTTACAATAGCGACACTTGCGATAGTGGAAGTATCTCGAGCACG
GATCAGATTGGCTCCAGCAATGTCTGGACACGCGGAGAGGCCGATAGTGC
GGCTGGCCTGGCAAAATCCAAGTCAAGGAATCTTAGCCTAGAACTCGACA
CGAATCGCAGGGATGTAAAGGAGCCAGTTCCGCCGACGCGACGAAAAGGA
AATGTGACGAAACCCACACTATTGGCCCAGGCGCCGGCCAAAATCTTTTT
GGTGTGGCTGGAGAGCTATGAGGATTACCTAAACTTTCCGCTCGAGGATC
TGCTAGCCTATACACGCACTGGCGAGGAGCTGCAGACGCAACAGTTGCCT
CGCGCCTCCGACTGTCACGTGATCTTCGTGCATTCGTTGCTCTCGGGACT
TCTGAGAGTAAAGTTGCAGGGTCCACCGGGAAGGATGAGCTTTGCCACGC
CCCTGGTCGATGGCATGGTCCTGAGCCGGCGGGTAGTCGGAAATCTGGTT
CGACAAACGGCATTGAACATATCACGCCGCCGGCGTCTGGACAATGATAA
CTACCAACCGCCTCATGTGCGACGACGACTCAAGGTGCAGGACATTGTCC
AGAAGTACAAAATGGATCTGAGCGAGGCCGATCTGTTGGCCCATCTGTTC
CAACGCGCAATTGCAAGCTTTCTAGACC
BO28520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34408-RA | 4599 | CG34408-PA | 1..4596 | 17..4612 | 22980 | 100 | Plus |
| CG34408-RH | 5187 | CG34408-PH | 1660..5184 | 1088..4612 | 17625 | 100 | Plus |
| CG34408-RB | 5157 | CG34408-PB | 1630..5154 | 1088..4612 | 17625 | 100 | Plus |
| CG34408-RH | 5187 | CG34408-PH | 443..1104 | 429..1090 | 3310 | 100 | Plus |
| CG34408-RH | 5187 | CG34408-PH | 1..412 | 17..428 | 2060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34408-RA | 5236 | CG34408-RA | 440..5035 | 17..4612 | 22980 | 100 | Plus |
| CG34408-RH | 5824 | CG34408-RH | 2099..5623 | 1088..4612 | 17625 | 100 | Plus |
| CG34408-RB | 5794 | CG34408-RB | 2069..5593 | 1088..4612 | 17625 | 100 | Plus |
| CG34408-RH | 5824 | CG34408-RH | 882..1543 | 429..1090 | 3310 | 100 | Plus |
| CG34408-RH | 5824 | CG34408-RH | 440..851 | 17..428 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:47:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10228663..10229507 | 3656..4500 | 4195 | 99.8 | Plus |
| X | 23542271 | X | 10228023..10228609 | 3078..3664 | 2935 | 100 | Plus |
| X | 23542271 | X | 10227400..10227957 | 2520..3077 | 2790 | 100 | Plus |
| X | 23542271 | X | 10225191..10225734 | 1422..1965 | 2720 | 100 | Plus |
| X | 23542271 | X | 10221866..10222264 | 429..827 | 1995 | 100 | Plus |
| X | 23542271 | X | 10222325..10222587 | 827..1089 | 1315 | 100 | Plus |
| X | 23542271 | X | 10221361..10221584 | 207..430 | 1120 | 100 | Plus |
| X | 23542271 | X | 10225798..10226021 | 1966..2189 | 1120 | 100 | Plus |
| X | 23542271 | X | 10220549..10220742 | 17..210 | 970 | 100 | Plus |
| X | 23542271 | X | 10224312..10224505 | 1087..1280 | 970 | 100 | Plus |
| X | 23542271 | X | 10226179..10226375 | 2189..2385 | 970 | 99.5 | Plus |
| X | 23542271 | X | 10226514..10226655 | 2381..2522 | 710 | 100 | Plus |
| X | 23542271 | X | 10224919..10225059 | 1281..1421 | 705 | 100 | Plus |
| X | 23542271 | X | 10229583..10229694 | 4501..4612 | 560 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:47:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2490..2535 | 1135..1180 | 140 | 78.3 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9170..9230 | 1135..1194 | 140 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6870 | 1134..1238 | 126 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6835..6882 | 1134..1181 | 123 | 72.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2442 | 1135..1180 | 122 | 73.9 | Plus |
BO28520.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-23 09:34:40 Download gff for
BO28520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34408-RA | 440..5035 | 17..4612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:59 Download gff for
BO28520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34408-RA | 440..5035 | 17..4612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:48 Download gff for
BO28520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34408-RA | 440..5035 | 17..4612 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:48 Download gff for
BO28520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10224919..10225059 | 1281..1421 | 100 | -> | Plus |
| X | 10221363..10221582 | 209..428 | 100 | -> | Plus |
| X | 10224314..10224505 | 1089..1280 | 100 | -> | Plus |
| X | 10220549..10220740 | 17..208 | 100 | -> | Plus |
| X | 10221866..10222264 | 429..827 | 100 | -> | Plus |
| X | 10222326..10222586 | 828..1088 | 100 | -> | Plus |
| X | 10225191..10225734 | 1422..1965 | 100 | -> | Plus |
| X | 10225798..10226021 | 1966..2189 | 100 | -> | Plus |
| X | 10226180..10226371 | 2190..2381 | 100 | -> | Plus |
| X | 10226515..10226655 | 2382..2522 | 100 | -> | Plus |
| X | 10227403..10227957 | 2523..3077 | 100 | -> | Plus |
| X | 10228023..10228609 | 3078..3664 | 100 | -> | Plus |
| X | 10228672..10229507 | 3665..4500 | 100 | -> | Plus |
| X | 10229583..10229694 | 4501..4612 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:59 Download gff for
BO28520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10115396..10115615 | 209..428 | 100 | -> | Plus |
| arm_X | 10114582..10114773 | 17..208 | 100 | -> | Plus |
| arm_X | 10115899..10116297 | 429..827 | 100 | -> | Plus |
| arm_X | 10116359..10116619 | 828..1088 | 100 | -> | Plus |
| arm_X | 10118347..10118538 | 1089..1280 | 100 | -> | Plus |
| arm_X | 10118952..10119092 | 1281..1421 | 100 | -> | Plus |
| arm_X | 10119224..10119767 | 1422..1965 | 100 | -> | Plus |
| arm_X | 10119831..10120054 | 1966..2189 | 100 | -> | Plus |
| arm_X | 10120213..10120404 | 2190..2381 | 100 | -> | Plus |
| arm_X | 10120548..10120688 | 2382..2522 | 100 | -> | Plus |
| arm_X | 10121436..10121990 | 2523..3077 | 100 | -> | Plus |
| arm_X | 10122056..10122642 | 3078..3664 | 100 | -> | Plus |
| arm_X | 10122705..10123540 | 3665..4500 | 100 | -> | Plus |
| arm_X | 10123616..10123727 | 4501..4612 | 100 | | Plus |
BO28520.pep Sequence
Translation from 16 to 4627
> BO28520.pep
MYSEWASLSAQITANSCGAQCFSVLNKFPASAGREVVVSVVKQLGTNLGI
TQNAEPSHLVKDEEVKWCMDVICFGLSLPLQEHETIKDCVNVYCEWLTAL
HPQPRISVPKPICEDANLYARQIINHFHNLFVPRQGESADTIKRQAVLCH
RVLRTLQQTAQISQLMDRQTWDTLLLFLLAINEILLAPPTVKDDVGDQLC
ERVLSVLFEVWLLACVRSFPSPSMWKTLQESCAMWRHRVALVDQWNRVNL
ALTARLLEFSYGPAFPQLKNADEDGQLIPIGMSNDCVAQTWYRFLRMIGN
PTALCSPHIISKSSHFVQWALTHEKGAETHQHPCLQQLPQIFLNAMKGIS
SQVDAFLGLSKTSLIGLTGGGARNAISSSSTTTTNAGSTGGTGSGDGSAP
APLPTTPTSTSGPPSASSSINSLPLTSMGAGVELAVARPKCNSILHVFHE
WLFEAAHIGGDTWRQNRKKQACEASKRPSSMIMEHRKGSISLSQPNSLND
PQSLPPTLTIDKYESGRAEAIGTLCKIFCAKKTGEEILPVYLARFYMALQ
QCLKITESRECDETLASILLHSSDLFRLDLDGINVLLPGFIAALEIVLPD
KDLKLKTQSMVFNRTELRRSAINILLSIMVLPLHYQTLPIRDLTCESSEK
MFTFIQLKSRLMNILMNALQVETDAQNTHMLLGGLLLCVQDAVTFEETEL
GGGNANLSQNSSGVQHHDANLLSSACSERSASLVSAGTASLGGQTTATMG
AGSGSIRDTASAHDYPSLTISDDMSFEFGQELEGVTTYDNAHALFVRATY
LVCHRLISSWKTDLNVSLAALELLSGLARLHIRETDALECKRAVKWICDY
ICYQCSRPPPAHSKDLHSTIVAAFQCTAAWLMQHPYLLQDKDCLQTVLEV
VELGISGTKSQSKGTDIPKFKDEKELKPASMRVRDAAENLLTIILEQVGY
FPSECGPESISSLLDELALMKHCNSMVPAAAASSEQAIAKFKYFVTENST
ILALLEEPLGNDQDPQPTVTLLIRGPFGRHAWTMQLRHLPRSKSGIKYHA
INPGRPIPMNDVTQRLDSEQKNFPDGVDKVQPCVADYSIPTIEQMREQYG
TAVIRELESLLENQSIHEKLAWAEADTSADSLSHAQECVPPTVCHEFHAA
RLFLSHFGFLGFETRNPQNPAEALGNPPQRPLIVLDTKSAAFAADLDRLD
KLSARTHDSVYVFYVKSGQTSAQQIIANMGEESSASHDPHFASMLQTLGW
PVQVSEHSGWTGFAHNSWSLKGTPEEQLKSTANELNYNGSQRVLYWADVS
SEIAFVVPTTWNLRYNSDTCDSGSISSTDQIGSSNVWTRGEADSAAGLAK
SKSRNLSLELDTNRRDVKEPVPPTRRKGNVTKPTLLAQAPAKIFLVWLES
YEDYLNFPLEDLLAYTRTGEELQTQQLPRASDCHVIFVHSLLSGLLRVKL
QGPPGRMSFATPLVDGMVLSRRVVGNLVRQTALNISRRRRLDNDNYQPPH
VRRRLKVQDIVQKYKMDLSEADLLAHLFQRAIASFLD
BO28520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:16:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34408-PA | 1532 | CG34408-PA | 1..1532 | 1..1532 | 7967 | 100 | Plus |
| CG34408-PD | 1468 | CG34408-PD | 1..1468 | 1..1532 | 7512 | 95.2 | Plus |
| CG34408-PH | 1728 | CG34408-PH | 554..1728 | 358..1532 | 6067 | 100 | Plus |
| CG34408-PB | 1718 | CG34408-PB | 544..1718 | 358..1532 | 6067 | 100 | Plus |
| CG34408-PE | 1724 | CG34408-PE | 544..1724 | 358..1532 | 6050 | 99.5 | Plus |
| CG34408-PB | 1718 | CG34408-PB | 1..359 | 1..359 | 1907 | 99.7 | Plus |
| CG34408-PH | 1728 | CG34408-PH | 1..369 | 1..359 | 1882 | 96.7 | Plus |
