BO28522.complete Sequence
991 bp assembled on 2011-07-13
GenBank Submission: KX795851
> BO28522.complete
GAAGTTATCAGTCGACATGGACCCCAGTCAACAGACGCCCCAGGAGACGG
TGGTGGCCCCCGTGGCCCCGCTGCTGGAGGATCAGCTGGAATTGGACATG
AAGCACTGCTTTGAGAACCTGATCGTCATCGACGTGGGTGCGAATCTGAC
CAACAAGAAGTATAGCCGTGATCTGGATTCCGTGGTGCAGAGAGCCAGAG
ACGCAGGTGTCCAGAAACTAATGGTTCACGGCACTTCGGTCAAATCGAGC
AAGGAAGCGCTGCGCCTTTCGCGCATCTATCCCGACATAATCTACTCAAC
TGCTGGCATTCACCCGCACGACTCCAAGTCCATCGTGGAAGAGCCGGCCA
CGTGGTTCGATCTGGAGCACATCGCCCAGGCGCAGGAGTGTGTGGCGATT
GGCCCCTGCGGCTTGGACTACCAGCGGGACTTCTCCGAACCGGACGCCCA
GAAGCAGATCTTCGCCAAGCAGCTGCATCTGGCCATCCGGCTAAATAAAC
CTCTGCTGATCCACGAGCGGTCGGCTCAGCTCGATTTACTCGAAATACTA
GACAAATTCGAGAATCTTCCGCCTGTGATCATCAGAGGTTTTATGGGCAC
CGCCGAGGAGGCGCTTAAGTACCTAGACCGGAGGTTCTACATCAGCCTGA
CGGGCTACCTGTGCAAGGACAAATCGGATACTGGCGTTCGCCGCCTGCTG
GAGGACGGCACATTGCCGCTAGACAGACTACTGGTGGAGACGGATGCTCC
TTTCATGTACCCAAACACAAGGGCTTCCAAGCTACCGCAACACGTGAAGA
CTGGTATCACCGAACGCTCATTGTTGTACTTACACAGATATTGTACCTTC
CAACGCAACGAGCCGTGCAGTTTGCCCGCCATTGTAGAGATGATAGCCGC
CTTCATGAAGAAAAGCCCGGACGAGGTGGCTTTGGCCACTGCCTTTAATG
CCCTGAAACTGTTTGGGTTGTCCGCAAGCTTTCTAGACCAT
BO28522.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3308-RA | 960 | CG3308-PA | 1..957 | 17..973 | 4770 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3308-RA | 2124 | CG3308-RA | 286..1244 | 15..973 | 4780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21272487..21272839 | 555..203 | 1765 | 100 | Minus |
| 3R | 32079331 | 3R | 21272155..21272436 | 837..556 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 21273339..21273532 | 208..15 | 970 | 100 | Minus |
| 3R | 32079331 | 3R | 21271958..21272096 | 973..835 | 680 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:48:40 has no hits.
BO28522.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:07 Download gff for
BO28522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3308-RA | 286..1242 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:18 Download gff for
BO28522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3308-RA | 288..1244 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:27:56 Download gff for
BO28522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3308-RA | 288..1244 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:56 Download gff for
BO28522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21271956..21272093 | 838..975 | 97 | <- | Minus |
| 3R | 21272155..21272436 | 556..837 | 100 | <- | Minus |
| 3R | 21272487..21272835 | 207..555 | 100 | <- | Minus |
| 3R | 21273341..21273530 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:18 Download gff for
BO28522.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17097877..17098158 | 556..837 | 100 | <- | Minus |
| arm_3R | 17097678..17097815 | 838..975 | 97 | <- | Minus |
| arm_3R | 17098209..17098557 | 207..555 | 100 | <- | Minus |
| arm_3R | 17099063..17099252 | 17..206 | 100 | | Minus |
BO28522.pep Sequence
Translation from 16 to 991
> BO28522.pep
MDPSQQTPQETVVAPVAPLLEDQLELDMKHCFENLIVIDVGANLTNKKYS
RDLDSVVQRARDAGVQKLMVHGTSVKSSKEALRLSRIYPDIIYSTAGIHP
HDSKSIVEEPATWFDLEHIAQAQECVAIGPCGLDYQRDFSEPDAQKQIFA
KQLHLAIRLNKPLLIHERSAQLDLLEILDKFENLPPVIIRGFMGTAEEAL
KYLDRRFYISLTGYLCKDKSDTGVRRLLEDGTLPLDRLLVETDAPFMYPN
TRASKLPQHVKTGITERSLLYLHRYCTFQRNEPCSLPAIVEMIAAFMKKS
PDEVALATAFNALKLFGLSASFLDH
BO28522.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3308-PA | 319 | CG3308-PA | 1..319 | 1..319 | 1642 | 100 | Plus |
| CG3358-PG | 291 | CG3358-PG | 10..283 | 47..316 | 272 | 31.4 | Plus |
| CG3358-PF | 291 | CG3358-PF | 10..283 | 47..316 | 272 | 31.4 | Plus |
| CG3358-PE | 291 | CG3358-PE | 10..283 | 47..316 | 272 | 31.4 | Plus |
