BO28523.complete Sequence
1180 bp assembled on 2011-07-13
GenBank Submission: KX799157
> BO28523.complete
GAAGTTATCAGTCGACATGGCCGACAAAGCTGCAGCGCCCTCTGTGGACT
GTGCGGCGCCATCTGTGGACTGTGCGACGCCTGCAATACCAGCCGTGGAG
GATCACACCACGCTGACCGTTCCACCTGCTTCAGCGAACAAAGCCACGGA
CGCTTCCACTTCCACTGCCGTCCAAGTGGCCGTCGATGGGGGGGAGCCGG
AACGCTGCTGCTGGATCTGCTTCGCCACCGATGAGGACAACCGTCTGGCG
GCGTGGGTGAAGCCCTGTCAGTGCCGCGGCACCACCAAGTGGGTGCACCA
GAGCTGCCTCTACCGCTGGATCGATGAAAAAACCCAGAAGGGTAACGCTC
TACGCACTGTATCGTGTCCGCAGTGCCAAACGGAGTACATCATAGTGTTC
CCGCAGATGGGCAAGCTTGGAGGTGCTTTAGAGGCAATAGATAACCTCAT
CAAGCGCCTGAGCCCCTTCCTGGCGGCTGGTTTCTTCGTGGGCTCCCTCT
ACTGGACAGCAGTAACTTACGGAGCAGTCACATTTTTACAGATTGTCGGA
CATGAGCACGGCATGTCCATAATGGAGTCTGGAGATCCGCTCGTTCTCCT
TATTGGGTTGCCGGCTATTCCAGTGGGGCTTGTGCTTGGTCGATTGATTC
GCTGGGAGGATGCATTGTTGCGTCTTATTCGAAACCGCGGGACGGTGGTG
CGGAAGTTTCCTTTTGTAAGCCTTATTTATCCGAACCTCAGCCAGGAAGA
GGAACAGCAAAGCATCAGCAATCCGGCCACACCGGCTCTCTCTGACCCTG
TCTCAGCCACGAGGGTCTTCTGCGGCGCTCTCTTGCTGCCCACCATATCG
TCGATCGTGGGACGTATTCTCTTTGACACGGTTGATAACACATTGCATCG
TACTCTGCTTGGAGGTCTGACCTTTATAACGGTCAAGGGAATTCTGAAAA
TTTATTTGAAGCAGAAACAGTACGGCCGCCGCAAGAAGCGCCGAATTGTG
GACTACACTGAGGAAAATATTCGGAACTTCATGCACCGCAACAATAACTC
GGCAGCAGCGGCGCGGCAGGAAAGGCTGCCCGAGCAGAGGCCAGTGCCAC
CAGCGGAGCGAAGGGACGCTGTAATCACACGTCAACGCGGCGATAGTGGT
GGTAGCGTTGTCGCAAGCTTTCTAGACCAT
BO28523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9855-RC | 1149 | CG9855-PC | 1..1146 | 17..1162 | 5730 | 100 | Plus |
| CG9855-RA | 1149 | CG9855-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
| CG17991-RA | 885 | CG17991-PA | 57..251 | 199..393 | 210 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9855-RC | 1718 | CG9855-RC | 169..1318 | 13..1162 | 5735 | 99.9 | Plus |
| CG9855-RA | 1533 | CG9855-RA | 169..1318 | 13..1162 | 5735 | 99.9 | Plus |
| CG17991-RA | 1064 | CG17991-RA | 122..316 | 199..393 | 210 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4397112..4397640 | 541..13 | 2630 | 99.8 | Minus |
| 3R | 32079331 | 3R | 4396379..4396802 | 1162..739 | 2120 | 100 | Minus |
| 3R | 32079331 | 3R | 4396860..4397058 | 738..540 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 27241388..27241582 | 199..393 | 210 | 73.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:59:23 has no hits.
BO28523.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 12:52:52 Download gff for
BO28523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9855-RA | 185..1330 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:15:01 Download gff for
BO28523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9855-RA | 173..1318 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:30 Download gff for
BO28523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9855-RA | 173..1318 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:30 Download gff for
BO28523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4396860..4397056 | 542..738 | 100 | <- | Minus |
| 3R | 4396377..4396802 | 739..1164 | 99 | <- | Minus |
| 3R | 4397112..4397636 | 17..541 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:15:01 Download gff for
BO28523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 222099..222524 | 739..1164 | 99 | <- | Minus |
| arm_3R | 222582..222778 | 542..738 | 100 | <- | Minus |
| arm_3R | 222834..223358 | 17..541 | 100 | | Minus |
BO28523.pep Sequence
Translation from 16 to 1180
> BO28523.pep
MADKAAAPSVDCAAPSVDCATPAIPAVEDHTTLTVPPASANKATDASTST
AVQVAVDGGEPERCCWICFATDEDNRLAAWVKPCQCRGTTKWVHQSCLYR
WIDEKTQKGNALRTVSCPQCQTEYIIVFPQMGKLGGALEAIDNLIKRLSP
FLAAGFFVGSLYWTAVTYGAVTFLQIVGHEHGMSIMESGDPLVLLIGLPA
IPVGLVLGRLIRWEDALLRLIRNRGTVVRKFPFVSLIYPNLSQEEEQQSI
SNPATPALSDPVSATRVFCGALLLPTISSIVGRILFDTVDNTLHRTLLGG
LTFITVKGILKIYLKQKQYGRRKKRRIVDYTEENIRNFMHRNNNSAAAAR
QERLPEQRPVPPAERRDAVITRQRGDSGGSVVASFLDH
BO28523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9855-PC | 382 | CG9855-PC | 1..382 | 1..382 | 1992 | 100 | Plus |
| CG9855-PA | 382 | CG9855-PA | 1..382 | 1..382 | 1992 | 100 | Plus |
| CG16781-PA | 383 | CG16781-PA | 32..337 | 56..345 | 735 | 47 | Plus |
| CG16781-PB | 386 | CG16781-PB | 35..340 | 56..345 | 735 | 47 | Plus |
| CG17991-PA | 294 | CG17991-PA | 2..288 | 46..335 | 715 | 52.4 | Plus |
