BO28524.complete Sequence
2758 bp assembled on 2011-08-05
GenBank Submission: KX798872
> BO28524.complete
GAAGTTATCAGTCGACATGAAGTACGGATGCGGATTACTCAGGAATGGCA
CCACGGGCGCTGTTATGGTCGGATTAGTTTGTGGCCTTTATGTTTGCAGC
GGCCAATGTGATAAGGTGGAAGTAATAGAGCTGAGCAATTGGACGATAAC
TAATCAGAATGGCTCCCTGACTATTGCCAACCAAACGTTGCCCTTGGGCA
TATACAGTGCCTTCGCACCCCAAGTGCTGGACTCCTACAACGACGTCGGT
CTGCGTTACTTGGCCTACGACAACTTTACCTTCTCCAATTTCTTTCAGTT
CGACGTTCATCACTTCAATCGCGGCCACATCAACCTGACGTTTCACGGCA
TTGACACGGTGTCGGAAATCCGGCTGAACCATCAACTGCTGGGACGCACG
GACAACATGTTTGTCCGCTACTCTTACGAAGTGAGTTCCCTGCTCCAAGC
GGAAAACTTTCTGGAAGTTGAGATCCAATCTCCAGTTGTGGCTGCTTTGG
CAAGAGCCAATGCTTTAAAAGAAGCTAAAAAGAGCGTGCCTCCCGAATGC
CCCAACGAGCGCTACCATGGTGAGTGCCACATGAACATGCTGCGGAAGAT
GCAGGCTAGCTTTTCCTGGGACTGGGGTCCTGCAGCTCCCTCTGCTGGAA
TCTGGAAAAACGTGGAGCTGGAAATCTACGAGGTGGCGGTTATTCGTGAG
GTGGATGTGGACGTTAGCCGCGTCAATGGTTCGTACTGGAACATGCATAT
TCGCTGCTTCCTGGACGCGGGAGGCTGGCAAAACTTCAATGGAAGACTCG
TCCTATATGCTGTCGAGCTATTGGACCGTCCGGTAGTAGTAGACAGATAC
GCAATAAAAAACATCAGTCACTTGGCGCCAGTAATTGAATTCGATCAGGC
CGTGCCAAATGGGAAAGTCGTAACCTGGTGGCCCAATGGCTACGGCGAGC
AGAAACTGTATCCGCTCCACTTCACTCTGAAGACCTGGCTGGGACCTGAT
GGACCCGAGGTTCGCTCTAAGACCAAGTCGCACAAGTCGCTCCGAGTGGG
TTTTCGTACGCTTGATCTAGTAGAGGATCCCGCCCCTGACGGCGTTGGAA
ACACCTTCCTGTTTCGAGTTAATGGTGTAGAAATGTTTATGAAAGGCAGT
AACTACATACCATCCCACTTATTACCCGAAATGCAAACAAATGAACAGAT
TTCACATTTATTAAGGTCCGCCAAGGAAGCCCATATGAACATGCTTCGAG
TCTGGGGAGGCGGAGTTTACGAATCGGACTACTTTTACCAGCTCGCCGAC
AGCTTGGGTCTTCTAATTTGGCAAGATATGATGTTTGCTTGTGCCATGTA
CCCGGTTAACGACGAATTCCTATCGTCAGTGCGTGAGGAGGTTCGCCAGA
ATGCCATGCGACTATCACACCATCCAAGCGTAGCCATTTTTGTGACCAAT
AACGAAAACGAAGCTGCTTTGGTACAGAACTGGTACGGCACGCTTTTCGA
AAGAGATCGATTTGAGAGCGAGTACCGGGAGCTCTACCTTGCTAATGTCA
TCCACGAGTTGAAGCTTGTTTCGCATAGCTCTCGACCTCAGCCACTGGTC
TCCTCACCTTCAAATGGCAAAGCTAGTGAACCGGACAACTATATTTCGAG
CAACCCTCAGGATAACCAAAATGGCGATGTACATTTCTACGACTACACTA
AGGACGGCTGGGATCCAGGAATTTTCCCACGTCCTCGATTCGTCAGTGAG
TTCGGCTTTCAGAGCTTTCCAGGCGCATACGCATGGCAGCGCAGCAAGGG
CGAGGACGATGACCTCCTCGGCCTGATCACACACCGACAACACCACCCAC
TGGGAAATGTTCCTGTTATCGCACTAGTGGAGAGACACCTACCGCTGCCC
TTTCCAGAGAATGAGAACTACGCGACAGCACTGATTTACTTCAGCCAGAT
TGCTCAAGCCATGGCCACAAAGGTGGAAACCGAATTATACCGTAGCCTTC
GGGACACTCCCCACAGAACGATGGGGGCCCTTTACTGGCAGCTGAATGAT
GTATGGGTGGCGCCATCCTGGTCCAGCATTGATTTCTACGGCAACTGGAA
GCTGCTCCATTACTGGGCACGTGATTTTCTAGCGCCTATTTCAATCGTTG
CTCTTTACGAAAAGTCCACGGATTCGTTAAACATCTCCCTTATTTGTGAC
CAATTGGAGGTGGACCCAAGGGAACTGAATGTCGTAGCTAACGTTCACCT
GTGGTCCCAGCTTCTGCCTCGGCAGTCCACCTCCTGGGATGTTACCCTGC
GCCCCAATGGCGTGCAGTACGACAAGGTCATTGCCATCTCCGATCTGCTG
CAAGGAGAGTTCACCAGAACTAACGCGTTTTTGGAGCTGCAGTTGCGCCG
CGGGCAGGATGTGATCTCTAGGACCCACTTCTTTCCCAGTAGCATTGCCG
GAGCAGTCGGAATAGAGGACCCCGGGCTTGAGTTCGAGATTGCCTCCCGT
ACCTGTCTTAACACCACAAACGTCGTCCGCAACAGCGTCAGCATTAGCAT
ACAGGTGAAGCGCCCCGCCGTATTTGTATACCTAGAGCTGCTCAAGCCAT
ACCGCTACACCCTGTCCGAGAACGGATTTATGCAGACTGAGCCAATGCAT
GTCGTCTACCTAACGTTCGACGCACCCTTGTGCGCCCGCCTTTTGCGCAA
GTCGGACCTCCGTGTGCTGACCGTCAACGACTTTATGAGAGCAAGCTTTC
TAGACCAT
BO28524.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12582-RD | 2727 | CG12582-PD | 1..2724 | 17..2740 | 13620 | 100 | Plus |
| CG12582-RA | 2727 | CG12582-PA | 1..2724 | 17..2740 | 13620 | 100 | Plus |
| CG12582-RH | 2721 | CG12582-PH | 1..2718 | 17..2740 | 13495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12582-RD | 2922 | CG12582-RD | 96..2820 | 16..2740 | 13625 | 100 | Plus |
| CG12582-RA | 3035 | CG12582-RA | 210..2933 | 17..2740 | 13620 | 100 | Plus |
| CG12582-RH | 3029 | CG12582-RH | 210..2927 | 17..2740 | 13495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:35:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4198259..4198772 | 300..813 | 2570 | 100 | Plus |
| 3R | 32079331 | 3R | 4201843..4202322 | 1200..1679 | 2400 | 100 | Plus |
| 3R | 32079331 | 3R | 4202375..4202797 | 1679..2101 | 2115 | 100 | Plus |
| 3R | 32079331 | 3R | 4203780..4204162 | 2100..2482 | 1915 | 100 | Plus |
| 3R | 32079331 | 3R | 4199005..4199293 | 911..1199 | 1445 | 100 | Plus |
| 3R | 32079331 | 3R | 4204211..4204470 | 2481..2740 | 1300 | 100 | Plus |
| 3R | 32079331 | 3R | 4197415..4197562 | 17..164 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 4197737..4197871 | 165..299 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 4198830..4198927 | 814..911 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:35:55 has no hits.
BO28524.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 11:49:11 Download gff for
BO28524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12582-RA | 109..2832 | 17..2742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:45 Download gff for
BO28524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12582-RD | 97..2820 | 17..2742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:37 Download gff for
BO28524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12582-RD | 97..2820 | 17..2742 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:37 Download gff for
BO28524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4197415..4197562 | 17..164 | 100 | -> | Plus |
| 3R | 4197737..4197871 | 165..299 | 100 | -> | Plus |
| 3R | 4198259..4198772 | 300..813 | 100 | -> | Plus |
| 3R | 4198830..4198926 | 814..910 | 100 | -> | Plus |
| 3R | 4199005..4199293 | 911..1199 | 100 | -> | Plus |
| 3R | 4201843..4202322 | 1200..1679 | 100 | -> | Plus |
| 3R | 4202376..4202797 | 1680..2101 | 100 | -> | Plus |
| 3R | 4203782..4204162 | 2102..2482 | 100 | -> | Plus |
| 3R | 4204213..4204470 | 2483..2742 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:45 Download gff for
BO28524.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23137..23284 | 17..164 | 100 | -> | Plus |
| arm_3R | 23459..23593 | 165..299 | 100 | -> | Plus |
| arm_3R | 23981..24494 | 300..813 | 100 | -> | Plus |
| arm_3R | 24552..24648 | 814..910 | 100 | -> | Plus |
| arm_3R | 24727..25015 | 911..1199 | 100 | -> | Plus |
| arm_3R | 27565..28044 | 1200..1679 | 100 | -> | Plus |
| arm_3R | 28098..28519 | 1680..2101 | 100 | -> | Plus |
| arm_3R | 29504..29884 | 2102..2482 | 100 | -> | Plus |
| arm_3R | 29935..30192 | 2483..2742 | 99 | | Plus |
BO28524.pep Sequence
Translation from 16 to 2758
> BO28524.pep
MKYGCGLLRNGTTGAVMVGLVCGLYVCSGQCDKVEVIELSNWTITNQNGS
LTIANQTLPLGIYSAFAPQVLDSYNDVGLRYLAYDNFTFSNFFQFDVHHF
NRGHINLTFHGIDTVSEIRLNHQLLGRTDNMFVRYSYEVSSLLQAENFLE
VEIQSPVVAALARANALKEAKKSVPPECPNERYHGECHMNMLRKMQASFS
WDWGPAAPSAGIWKNVELEIYEVAVIREVDVDVSRVNGSYWNMHIRCFLD
AGGWQNFNGRLVLYAVELLDRPVVVDRYAIKNISHLAPVIEFDQAVPNGK
VVTWWPNGYGEQKLYPLHFTLKTWLGPDGPEVRSKTKSHKSLRVGFRTLD
LVEDPAPDGVGNTFLFRVNGVEMFMKGSNYIPSHLLPEMQTNEQISHLLR
SAKEAHMNMLRVWGGGVYESDYFYQLADSLGLLIWQDMMFACAMYPVNDE
FLSSVREEVRQNAMRLSHHPSVAIFVTNNENEAALVQNWYGTLFERDRFE
SEYRELYLANVIHELKLVSHSSRPQPLVSSPSNGKASEPDNYISSNPQDN
QNGDVHFYDYTKDGWDPGIFPRPRFVSEFGFQSFPGAYAWQRSKGEDDDL
LGLITHRQHHPLGNVPVIALVERHLPLPFPENENYATALIYFSQIAQAMA
TKVETELYRSLRDTPHRTMGALYWQLNDVWVAPSWSSIDFYGNWKLLHYW
ARDFLAPISIVALYEKSTDSLNISLICDQLEVDPRELNVVANVHLWSQLL
PRQSTSWDVTLRPNGVQYDKVIAISDLLQGEFTRTNAFLELQLRRGQDVI
SRTHFFPSSIAGAVGIEDPGLEFEIASRTCLNTTNVVRNSVSISIQVKRP
AVFVYLELLKPYRYTLSENGFMQTEPMHVVYLTFDAPLCARLLRKSDLRV
LTVNDFMRASFLDH
BO28524.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12582-PD | 908 | CG12582-PD | 1..908 | 1..908 | 4833 | 100 | Plus |
| CG12582-PA | 908 | CG12582-PA | 1..908 | 1..908 | 4833 | 100 | Plus |
| CG12582-PH | 906 | CG12582-PH | 1..906 | 1..908 | 4809 | 99.8 | Plus |
| CG12582-PG | 778 | CG12582-PG | 1..778 | 131..908 | 4134 | 100 | Plus |
| CG12582-PF | 778 | CG12582-PF | 1..778 | 131..908 | 4134 | 100 | Plus |
