BO28528.complete Sequence
1372 bp assembled on 2011-07-13
GenBank Submission: KX796261
> BO28528.complete
GAAGTTATCAGTCGACATGACTGCTTTGACATTGCTACGACGATCAGTTA
CGGCGGTCAGCTACGACGGTTACGCCCACGTTTGCGTTACGAATTGGCGG
TTTCTGCCCCAGCTTCAAAGGTGCCAATTGCATTTGCACGTTAGTGGGCG
ACATGCTGCTGTACTTTTGTCCAGCAAAACAACAGCAACAACAGCAACAT
CAGCTGTTGCAGCTGCGCAGGCGCCAAATGCGTATGCTAATGTTGGCGGC
TTTTCCATCACGTACCGCACCATGTCCGCCGCTGCTCCGAAACTGGTGGC
CGTTGCCGAGTCGCGTCGTTTCATGATCGACTGCTTCAAGGCGGTGAAGG
TGCCCCAGGCCCATGCCGAAGCCCAGGCGGATCTCCTGGTGGCTGCGGAC
CATCGGGGGCACTTCAGCCATGGCATGAACCGCCTTGAGATGTACATCAA
CGATCTGGCCATCAACTCCACGGACGGAGCGGCTGTGCCCAAGATCCTAA
AGGAAACTCCGGCCACCGCCTGGGTGGATGGCCTGAATGGACTTGGTGCC
GTCGTGGGCAACTACTGCATGGATCTGGCCATCAAGAAGGCCAAGACGGT
GGGAGTTGGCTGGGTTTGTGCCAAGGGATCGAACCACTATGGCATGGCTG
GTTGGTATGCCATCAGGGCCATGGATCAGGGTCTGGTGGGCATGTCCATG
ACGAATACCTCGCCGCTGATGGCACCCACACGCGCCAAGGAGGCTGCTCT
GGGCACCAATCCCTTGTCCCTGGGTGCCAATGCCACCAACGGTGATAAGT
TCCTGCTGGACATGGCCACCACAGCCGTGGCCGTGGGAAAGATCGAGATC
CAGCGCAGGAAGGGAGCTCCTCTGCCCGACGGATGGGCTCAGGATCCCAG
TGGTGAAGTGACCAACGATGCAGAGCTGGGTTTCAGCACTGGGTGCCTGA
TGCCATTAGGAGGATCCGAGCTGACCTCCGGCTACAAGGGTTACGGCCTT
GGCGCCATGGTGGACATTCTGTCGGGTGTCATGTCCGGAGCCAACTACTC
GACGCAGGTGAGGAAGTGGACACATGCTGGCGCCGATTCCGCAGCTGATC
TTGGCCAGGTCTTCATCGCCGTGGATCCCAACTGCTTTGCTCCCAACTTC
GAGGAACGCATGGCCGACTTCAACTCCCGCCTGCGAGGCGCTACTCCGAC
CGATCCCAGCAAGCCCGTTTTGCTGGCTGGAGACAAGGAGAAGAAGGGAA
TGGCTGACGTCGATGCCGCCGGCGGTATACAGTATCTGGAGAATCAGTTG
AAGACGTGCGCCAACCTGGCGGAAATACTGAAGATTAAGCCCCTGAGCTT
TGTTGCAAGCTTTCTAGACCAT
BO28528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10512-RA | 1341 | CG10512-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
CG10512-RB | 1146 | CG10512-PB | 37..1143 | 248..1354 | 5535 | 100 | Plus |
CG10512-RD | 1086 | CG10512-PD | 1..1083 | 272..1354 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:49:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10512-RA | 2010 | CG10512-RA | 168..1509 | 13..1354 | 6695 | 99.9 | Plus |
CG10512-RD | 1659 | CG10512-RD | 52..1158 | 248..1354 | 5535 | 100 | Plus |
CG10512-RC | 1704 | CG10512-RC | 97..1203 | 248..1354 | 5535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21205676..21206626 | 248..1198 | 4755 | 100 | Plus |
3L | 28110227 | 3L | 21203087..21203323 | 13..249 | 1170 | 99.6 | Plus |
3L | 28110227 | 3L | 21207435..21207591 | 1198..1354 | 785 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2363 | 172..220 | 141 | 80.4 | Plus |
X-element | 4740 | X-element ROXELEMENT 4740bp | 1747..1784 | 177..214 | 127 | 81.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2421 | 172..204 | 122 | 88.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6818 | 172..213 | 122 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2372 | 178..220 | 118 | 77.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1130..1164 | 172..205 | 118 | 85.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2386..2421 | 178..213 | 117 | 80.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1113..1148 | 178..213 | 117 | 80.6 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9342..9440 | 111..212 | 115 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6770 | 171..216 | 114 | 76 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6784 | 172..220 | 114 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6805 | 172..220 | 114 | 74.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6917 | 172..213 | 113 | 76.7 | Plus |
BO28528.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:10 Download gff for
BO28528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10512-RA | 172..1509 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:45 Download gff for
BO28528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10512-RA | 172..1509 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:22 Download gff for
BO28528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10512-RA | 172..1509 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:22 Download gff for
BO28528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21203091..21203322 | 17..248 | 100 | -> | Plus |
3L | 21205677..21206626 | 249..1198 | 100 | -> | Plus |
3L | 21207436..21207591 | 1199..1356 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:45 Download gff for
BO28528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21200536..21200691 | 1199..1356 | 98 | | Plus |
arm_3L | 21196191..21196422 | 17..248 | 100 | -> | Plus |
arm_3L | 21198777..21199726 | 249..1198 | 100 | -> | Plus |
BO28528.pep Sequence
Translation from 16 to 1372
> BO28528.pep
MTALTLLRRSVTAVSYDGYAHVCVTNWRFLPQLQRCQLHLHVSGRHAAVL
LSSKTTATTATSAVAAAQAPNAYANVGGFSITYRTMSAAAPKLVAVAESR
RFMIDCFKAVKVPQAHAEAQADLLVAADHRGHFSHGMNRLEMYINDLAIN
STDGAAVPKILKETPATAWVDGLNGLGAVVGNYCMDLAIKKAKTVGVGWV
CAKGSNHYGMAGWYAIRAMDQGLVGMSMTNTSPLMAPTRAKEAALGTNPL
SLGANATNGDKFLLDMATTAVAVGKIEIQRRKGAPLPDGWAQDPSGEVTN
DAELGFSTGCLMPLGGSELTSGYKGYGLGAMVDILSGVMSGANYSTQVRK
WTHAGADSAADLGQVFIAVDPNCFAPNFEERMADFNSRLRGATPTDPSKP
VLLAGDKEKKGMADVDAAGGIQYLENQLKTCANLAEILKIKPLSFVASFL
DH
BO28528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10512-PA | 446 | CG10512-PA | 1..446 | 1..446 | 2308 | 100 | Plus |
CG10512-PB | 381 | CG10512-PB | 13..381 | 78..446 | 1916 | 100 | Plus |
CG10512-PD | 361 | CG10512-PD | 1..361 | 86..446 | 1874 | 100 | Plus |
CG10512-PC | 361 | CG10512-PC | 1..361 | 86..446 | 1874 | 100 | Plus |
CG18808-PA | 385 | CG18808-PA | 25..372 | 85..443 | 625 | 38.8 | Plus |