BO28529.complete Sequence
2671 bp assembled on 2011-08-04
GenBank Submission: KX799108
> BO28529.complete
GAAGTTATCAGTCGACATGTCGTCATCGCAGGCTGTCCGCTCCTCGAAAT
ACTCCTACCGTGCCACGTCCACCGGACCCGGTACCGCCGATGTGAACATC
GAGTACATCCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGACAAGATCCG
TTTGCTCCAAGATGATCTTGAAGTTGAACGTGAGTTGCGCCAAAGGATCG
AGCGCGAGAAAGCCGATCTCAGCGTTCAGGTCATTCAGATGTCCGAGCGT
CTCGAGGAGGCCGAGGGTGGTGCTGAACATCAATTTGAAGCCAACCGCAA
GCGCGACGCTGAGCTGCTGAAGCTGCGCAAGCTGCTTGAGGATGTTCATC
TTGAGTCGGAGGAGACCACTTTGCTTTTGAAGAAAAAGCACAACGAAATT
ATCACGGATTTCCAGGAACAGGTTGAAATCCTAACGAAAAACAAGGCCAG
AGCCGAAAAGGACAAGGCCAAATTCCAGACCGAAGTCTACGAGCTGCTCT
CCCAGATCGAGTCCTACAACAAGGAGAAGATCGTGTCGGAGAAGCACATC
TCCAAACTGGAGGTCTCGATCTCCGAGCTCAACGTGAAGATCGAGGAGCT
TAACCGCACCGTTATCGACATTAGCTCCCACCGATCCCGCCTCTCGCAGG
AGAACATTGAGCTGACCAAGGACGTCCAAGATCTGAAGGTTCAGCTGGAC
ACGGTCTCGTTCTCCAAGAGCCAGGTCATTTCCCAGCTGGAGGACGCCCG
CCGTCGCTTGGAGGACGAGGACCGTCGTCGCTCGCTGCTCGAATCCTCTC
TGCATCAGGTTGAGATCGAATTGGACTCGGTTCGTAATCAACTCGAGGAG
GAGTCCGAGGCCCGCATCGACTTGGAACGTCAGTTGGTCAAGGCCAATGC
CGATGCCACCTCCTGGCAGAACAAGTGGAACTCCGAGGTGGCTGCCCGCG
CCGAGGAGGTCGAGGAGATCCGTCGCAAGTACCAGGTCCGCATCACCGAG
CTGGAGGAGCACATCGAGTCCCTCATCGTCAAGGTCAACAATCTGGAGAA
GATGAAGACGCGCCTGGCCAGCGAAGTGGAGGTGCTCATCATCGATCTGG
AGAAGTCGAACAACAGCTGCCGCGAGCTGACCAAGTCGGTCAACACCCTC
GAGAAGCACAACGTTGAGCTGAAGAGCCGTCTGGACGAGACCATCATCCT
GTACGAGACCAGCCAGCGCGACCTGAAGAACAAGCACGCCGACCTCGTCC
GCACTGTCCACGAACTGGACAAGGTCAAGGACAACAACAACCAGCTGACC
CGCGAGAACAAGAAACTGGGAGATGATCTTCATGAGGCCAAGGGTGCCAT
CAACGAACTGAACCGTCGTCTGCACGAATTGGAACTGGAGCTGCGTCGTC
TGGAGAACGAGCGTGATGAGCTGACCGCTGCCTACAAGGAAGCCGAGGCT
GGCCGCAAGGCTGAGGAGCAGCGCGGACAGCGCCTGGCCGCCGACTTCAA
CCAGTACCGCCACGACGCCGAGCGTCGTCTGGCCGAGAAGGATGAGGAGA
TCGAGGCCATTCGCAAGCAGACCTCGATCGAGATCGAGCAGCTCAATGCC
CGCGTCATCGAGGCGGAGACCCGGCTGAAGACCGAGGTGACCCGCATCAA
GAAGAAGCTGCAGATCCAGATCACCGAGCTGGAGATGTCGCTGGATGTGG
CCAACAAGACCAACATCGATCTGCAGAAGGTGATCAAGAAGCAGTCGCTG
CAGCTGACCGAACTGCAGGCCCACTACGAGGATGTCCAGCGCCAGTTGCA
GGCCACCTTGGACCAGTATGCCGTTGCCCAGCGCCGTCTGGCCGGTCTCA
ATGGCGAGCTGGAGGAGGTGCGCTCGCACCTGGACAGCGCCAACCGTGCC
AAGCGCACCGTGGAGCTGCAGTACGAGGAGGCTGCCTCCCGCATCAACGA
ACTGACCACCGCCAATGTCAGCCTCGTCTCCATCAAGTCCAAGCTGGAGC
AGGAGCTCTCCGTGGTCGCCTCCGACTACGAGGAGGTGTCCAAGGAGCTG
CGCATCAGCGACGAGCGCTACCAGAAGGTCCAGGTGGAGCTCAAGCATGT
CGTCGAGCAGGTGCATGAGGAGCAGGAGCGCATCGTTAAGCTGGAGACCA
TCAAGAAGTCCTTGGAAGTCGAAGTCAAGAACTTGTCCATCCGCTTGGAG
GAGGTCGAGCTGAACGCCGTCGCCGGCAGCAAGCGCATCATCAGCAAGCT
GGAAGCCCGCATCCGCGATCTGGAGCTGGAGCTGGAGGAGGAGAAGCGCC
GCCACGCCGAGACCATCAAGATTCTGCGCAAGAAGGAGCGCACCGTCAAG
GAGGTGCTGGTGCAGTGCGAGGAGGACCAGAAGAACCTCATCCTGCTGCA
GGACGCGCTGGACAAGTCCACTGCCAAGATCAACATCTACCGCCGCCAGC
TGTCCGAGCAGGAGGGTGTCTCCCAGCAGACCACCACCCGTGTGCGCCGC
TTCCAGCGCGAGCTGGAGGCTGCCGAGGATCGCGCCGACACCGCCGAGTC
CAGCCTGAACATCATCCGCGCCAAGCACCGCACATTCGTCACCACCTCGA
CGGTGCCCGGATCCCAGGTGTACATCCAGGAGACCACAAGGACGATCACC
GAAGCAAGCTTTCTAGACCAT
BO28529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prm-RA | 2640 | CG5939-PA | 1..2637 | 17..2653 | 13185 | 100 | Plus |
| Prm-RB | 2640 | CG5939-PB | 1..2637 | 17..2653 | 13185 | 100 | Plus |
| Prm-RD | 1923 | CG5939-PD | 830..1920 | 1563..2653 | 5455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prm-RA | 3661 | CG5939-RA | 224..2862 | 15..2653 | 13195 | 100 | Plus |
| Prm-RB | 3226 | CG5939-RB | 224..2862 | 15..2653 | 13195 | 100 | Plus |
| Prm-RD | 2720 | CG5939-RD | 1266..2356 | 1563..2653 | 5455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8739580..8740454 | 1322..448 | 4375 | 100 | Minus |
| 3L | 28110227 | 3L | 8734240..8734856 | 2179..1563 | 3085 | 100 | Minus |
| 3L | 28110227 | 3L | 8733657..8734132 | 2653..2178 | 2380 | 100 | Minus |
| 3L | 28110227 | 3L | 8742106..8742272 | 450..284 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 8739366..8739496 | 1451..1321 | 655 | 100 | Minus |
| 3L | 28110227 | 3L | 8744962..8745087 | 140..15 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 8739170..8739282 | 1563..1451 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 8742337..8742424 | 283..196 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 8744275..8744338 | 196..133 | 305 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:55:14 has no hits.
BO28529.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:51 Download gff for
BO28529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prm-RA | 263..2899 | 17..2655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:34 Download gff for
BO28529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prm-RB | 226..2862 | 17..2655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:36 Download gff for
BO28529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prm-RB | 226..2862 | 17..2655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:36 Download gff for
BO28529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8742337..8742423 | 197..283 | 100 | <- | Minus |
| 3L | 8744275..8744331 | 140..196 | 100 | <- | Minus |
| 3L | 8744963..8745085 | 17..139 | 100 | | Minus |
| 3L | 8733655..8734130 | 2180..2655 | 99 | <- | Minus |
| 3L | 8734240..8734855 | 1564..2179 | 100 | <- | Minus |
| 3L | 8739170..8739282 | 1451..1563 | 100 | <- | Minus |
| 3L | 8739367..8739494 | 1323..1450 | 100 | <- | Minus |
| 3L | 8739580..8740451 | 451..1322 | 100 | <- | Minus |
| 3L | 8742106..8742272 | 284..450 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:34 Download gff for
BO28529.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8726755..8727230 | 2180..2655 | 99 | <- | Minus |
| arm_3L | 8727340..8727955 | 1564..2179 | 100 | <- | Minus |
| arm_3L | 8732270..8732382 | 1451..1563 | 100 | <- | Minus |
| arm_3L | 8732467..8732594 | 1323..1450 | 100 | <- | Minus |
| arm_3L | 8732680..8733551 | 451..1322 | 100 | <- | Minus |
| arm_3L | 8735206..8735372 | 284..450 | 100 | <- | Minus |
| arm_3L | 8735437..8735523 | 197..283 | 100 | <- | Minus |
| arm_3L | 8737375..8737431 | 140..196 | 100 | <- | Minus |
| arm_3L | 8738063..8738185 | 17..139 | 100 | | Minus |
BO28529.pep Sequence
Translation from 16 to 2671
> BO28529.pep
MSSSQAVRSSKYSYRATSTGPGTADVNIEYIQDLSSLSRLEDKIRLLQDD
LEVERELRQRIEREKADLSVQVIQMSERLEEAEGGAEHQFEANRKRDAEL
LKLRKLLEDVHLESEETTLLLKKKHNEIITDFQEQVEILTKNKARAEKDK
AKFQTEVYELLSQIESYNKEKIVSEKHISKLEVSISELNVKIEELNRTVI
DISSHRSRLSQENIELTKDVQDLKVQLDTVSFSKSQVISQLEDARRRLED
EDRRRSLLESSLHQVEIELDSVRNQLEEESEARIDLERQLVKANADATSW
QNKWNSEVAARAEEVEEIRRKYQVRITELEEHIESLIVKVNNLEKMKTRL
ASEVEVLIIDLEKSNNSCRELTKSVNTLEKHNVELKSRLDETIILYETSQ
RDLKNKHADLVRTVHELDKVKDNNNQLTRENKKLGDDLHEAKGAINELNR
RLHELELELRRLENERDELTAAYKEAEAGRKAEEQRGQRLAADFNQYRHD
AERRLAEKDEEIEAIRKQTSIEIEQLNARVIEAETRLKTEVTRIKKKLQI
QITELEMSLDVANKTNIDLQKVIKKQSLQLTELQAHYEDVQRQLQATLDQ
YAVAQRRLAGLNGELEEVRSHLDSANRAKRTVELQYEEAASRINELTTAN
VSLVSIKSKLEQELSVVASDYEEVSKELRISDERYQKVQVELKHVVEQVH
EEQERIVKLETIKKSLEVEVKNLSIRLEEVELNAVAGSKRIISKLEARIR
DLELELEEEKRRHAETIKILRKKERTVKEVLVQCEEDQKNLILLQDALDK
STAKINIYRRQLSEQEGVSQQTTTRVRRFQRELEAAEDRADTAESSLNII
RAKHRTFVTTSTVPGSQVYIQETTRTITEASFLDH
BO28529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prm-PA | 879 | CG5939-PA | 1..879 | 1..879 | 4268 | 100 | Plus |
| Prm-PB | 879 | CG5939-PB | 1..879 | 1..879 | 4268 | 100 | Plus |
| Prm-PD | 640 | CG5939-PD | 256..640 | 499..879 | 1740 | 95.1 | Plus |
| Prm-PC | 640 | CG5939-PC | 256..640 | 499..879 | 1740 | 95.1 | Plus |
| Mhc-PU | 1949 | CG17927-PU | 1095..1924 | 25..855 | 1515 | 38.1 | Plus |
| Prm-PD | 640 | CG5939-PD | 125..620 | 145..655 | 230 | 21.3 | Plus |
| Prm-PC | 640 | CG5939-PC | 125..620 | 145..655 | 230 | 21.3 | Plus |
| Prm-PD | 640 | CG5939-PD | 208..621 | 7..413 | 173 | 22.1 | Plus |
| Prm-PC | 640 | CG5939-PC | 208..621 | 7..413 | 173 | 22.1 | Plus |
