BO28530.complete Sequence
1762 bp assembled on 2011-08-04
GenBank Submission: KX794771
> BO28530.complete
GAAGTTATCAGTCGACATGACCGAGGGCAAGAACTTACCCCACTCTAGTG
CGGATGTGCCGTTCCGCAGCAAGGAGCTGCGCAAGCAATCGCTCATCCAG
CACACCGGCCTGGTCGGAGTCATCGATGAGGGCACCAAGACCATCGGTTT
CTCCATCTACACCACGCCGGACTTCAAGGAGATCGCCGCACACCGGGTGG
AGCTGAGCGTGATCACGCCCCAGGATGGCTGGTATGAGCAGGATCCGCTG
GAGATGATGGCCTCGATCAACAAGTGCGCCGAGGAGGCCATCAAGCAGCT
ACCCGAACAGGGTTTCTCTGCCAGCGACATTGTCACCGTGGGCATAACCA
ACCAGCGCGAGACGACAATCGTCTGGGATGCGGTCACCGGCAAACCGCTG
TACAATGCGCTCCTGTGGAAGGACATCCGCACTAGCACTACAGTGGAGCA
GATCGTGGCCAAGGTGCAGGATCCGAACCACTTCCGCAGCAGCACTGGCC
TGCCCATCTCCACGTACTTCTCGGCCCTCAAGATCCGCTGGCTGCGGGAC
AATGTGCCCGAGGTGCGACAGGCCATCCGGGAAAGGCGATGCAAGGCGGG
CACAGTCGACAGCTGGATCGTCTGGAACTTGACAAACGGAGCTCTCCACA
TCACGGATGTAACGAATGCCTCCCGCACTCTGCTCATGAATCTGGAGACG
CAAGCCTGGGATCCTGTTCTGCTCAAGACGTTCGGTATCAGAGAGGAGAT
GCTGCCCACCATCCACAGCTGTTCGGAGATATTTGGCAAGATCACTTCGG
AGCGAAGTCCACTGCGTGGGATGACCCTAAGTGGAATAATGGGCAACCAG
CAGGCCTCGCTTCTGGGCCAGATGTGCGTGAAGCCGGGTCAAACGAAGAA
CACCTACCGATCCGGCTGTTTTCTGCTCTGCAATACGGGGGACAAGCCGG
TCTTTTCCAGGCACGGTCTGCTCACCACCGTGGCTTACAAACTCGGTCCC
CAGGCACCGACGATTTACGCAATTGAGGGAGCTGTGTCGGTGGCCGGACA
TGCGCTGTCCTGGCTGCAAAACAAGGTGCGTATCCTGCCGGACTCCAGAG
ATGCCGAGAAATATGCGGAGATGGTGCCCACATCGGGGGATGTGTACTTC
GTGCCCGCCTTTACAGGACTATATGCTCCCTACTGGCGGCAGAATGCTCG
CGGCATCATCATTGGGCTCACGCAGTTCACCCGTAAGAATCACATAGTGA
GAGCTGCACTGGAGAGCATCTGCTTCCAGACGCGCGACATCCTAGAGTGC
ATGCATCAGGAGTGCGGTTACGAAATCAATAAGCTTCATGCTGATGGCAA
GCTCACCACGAACAACCTGTTGATGCAACTCCAGGCGGACACCATTGGCA
TGCCCGTCTTCCGCTCCCAGCTAATGGACTCCACCGCTTTCGGGGCAGCC
ATGTGCGCCGCCCAGGCAGATGGTGTCAATCTCTGCCAGTTCGAGCCTGA
GAAGCGATACTACGAGAACGTGCACTACGACACCTTCCTGGCCACCACCA
CGGATGTAGAGCGAAAGGAGCGATACGGCAAGTGGAAGCGGGCGGTGGAG
CGCAGTTTGGGATGGGTCATCAAGCAGAAGAAGACGCGTGAGTACACGGA
GGAGAACTACCGCATGCTGTCCTCTCTGCCAGCGAGCATCTTCCTCATCA
GCAGCTTCGCCATGCTGGTGCATTCCCTCGCTGCGAGTGGCCAGGCAAGC
TTTCTAGACCAT
BO28530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gk-RF | 1731 | CG7995-PF | 1..1728 | 17..1744 | 8640 | 100 | Plus |
| Gk-RA | 1731 | CG7995-PA | 1..1728 | 17..1744 | 8640 | 100 | Plus |
| Gk-RB | 1731 | CG7995-PB | 1..1728 | 17..1744 | 8640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gk-RD | 2260 | CG7995-RD | 119..1848 | 15..1744 | 8650 | 100 | Plus |
| Gk-RF | 2483 | CG7995-RF | 343..2071 | 16..1744 | 8645 | 100 | Plus |
| Gk-RA | 2318 | CG7995-RA | 178..1906 | 16..1744 | 8645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1743903..1745009 | 638..1744 | 5535 | 100 | Plus |
| 3L | 28110227 | 3L | 1743212..1743835 | 16..639 | 3120 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:55:36 has no hits.
BO28530.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:51 Download gff for
BO28530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7995-RD | 121..1848 | 17..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:48 Download gff for
BO28530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gk-RD | 121..1848 | 17..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:46 Download gff for
BO28530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gk-RD | 121..1848 | 17..1746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:46 Download gff for
BO28530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1743213..1743834 | 17..638 | 100 | -> | Plus |
| 3L | 1743904..1745009 | 639..1746 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:48 Download gff for
BO28530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1743213..1743834 | 17..638 | 100 | -> | Plus |
| arm_3L | 1743904..1745009 | 639..1746 | 99 | | Plus |
BO28530.pep Sequence
Translation from 16 to 1762
> BO28530.pep
MTEGKNLPHSSADVPFRSKELRKQSLIQHTGLVGVIDEGTKTIGFSIYTT
PDFKEIAAHRVELSVITPQDGWYEQDPLEMMASINKCAEEAIKQLPEQGF
SASDIVTVGITNQRETTIVWDAVTGKPLYNALLWKDIRTSTTVEQIVAKV
QDPNHFRSSTGLPISTYFSALKIRWLRDNVPEVRQAIRERRCKAGTVDSW
IVWNLTNGALHITDVTNASRTLLMNLETQAWDPVLLKTFGIREEMLPTIH
SCSEIFGKITSERSPLRGMTLSGIMGNQQASLLGQMCVKPGQTKNTYRSG
CFLLCNTGDKPVFSRHGLLTTVAYKLGPQAPTIYAIEGAVSVAGHALSWL
QNKVRILPDSRDAEKYAEMVPTSGDVYFVPAFTGLYAPYWRQNARGIIIG
LTQFTRKNHIVRAALESICFQTRDILECMHQECGYEINKLHADGKLTTNN
LLMQLQADTIGMPVFRSQLMDSTAFGAAMCAAQADGVNLCQFEPEKRYYE
NVHYDTFLATTTDVERKERYGKWKRAVERSLGWVIKQKKTREYTEENYRM
LSSLPASIFLISSFAMLVHSLAASGQASFLDH
BO28530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gk-PF | 576 | CG7995-PF | 1..576 | 1..576 | 3010 | 100 | Plus |
| Gk-PA | 576 | CG7995-PA | 1..576 | 1..576 | 3010 | 100 | Plus |
| Gk-PB | 576 | CG7995-PB | 1..576 | 1..576 | 3010 | 100 | Plus |
| Gk-PD | 576 | CG7995-PD | 1..576 | 1..576 | 3010 | 100 | Plus |
| Gk-PE | 576 | CG7995-PE | 1..576 | 1..576 | 3010 | 100 | Plus |
