BO28540.complete Sequence
1237 bp assembled on 2011-07-13
GenBank Submission: KX795933
> BO28540.complete
GAAGTTATCAGTCGACATGACGACAGCTGACCGCCCGCTCGACGTCAGCA
GGAGCAGCGGAAGCGGTAGCCGGAGCGGTAACAAAACGGCCAGAACCAGG
AATCCAGTGGAACCGCAGCCGCAACCGCCGTTCGTGGATCGACGACGACG
CCTGAACAGGAACTGGTCACTGATCTTACTCGCCTTGGCCATGTCCCAGT
TTGCCCTCTCCGGCGGCGGTTGTGGCGTCTCAGCGGCGCCCAGTCACCTG
GCCACCCCGCCCACTGACAGCCCCTCCAGTCCCATCAATCCCACCAATCC
CCTGAAGCACCTACAGAAGCGTTCCAGAGCGGCCAACTTCCGGCTGACCT
TCCAGCAGAAATTGAATGCCAGCAGTACGCATCTGGACTGGGAGAACACC
TGCAATCTGAAGCCCACGGGTCTGAACGAAACGCATAGCAAGGCGAAACG
CTGCAAGAAACGCCAAAGGATCCTGCAGAATCTACAGAACCAAACGGGCC
GCGAGCTGCGGGGCATCCAGGCCGAGGACAAGGCCAGGATCACCACCAAT
GCGGACAAGCTGGCCACAGTGAGCACCAAGACTCTGGACATTGTCGAGAA
GAACAAGTGGCGATTCTATAAGGGAAACTACAGATTCCTGCCCCGTCTGA
ATCTCACTAGCAAACAGTTGAACCTTCGCCACGCCCATCGCGACCTGCAG
ATTTACGTGGGCGCCTTCACGTACATGCGCAACATCAAGTTGCATTGGGA
CCTGGCCAACTTGCAGGCGAAGAGCGTGCTCTCCGACGAGCTGGGAAGGA
TGCGGAAGTCCGCCCGCGAGGTGCTCTGCAGCGTGGAGGAGGCCATCAAC
CTGACCAACCTGCTGTACACACCCAACAGGCAGCGGGCGCCACAGCCGAG
GGGCCAGAAGAAGCGGCGCCAGGCCCAACCGGTGGTCACCTACAAGATAC
TGCCGCGCAAGCTGATGGAGAAGCGTCTGCAGCAGTTCAACTCGACGTTG
GTGCCACTCGTGGAGCTGCACCAGCAGGCGACCTTGGCCGCACGCGGGGA
GGATGTACCACCACCGCCCGACGACCTGATGGTCCTGGAGCAGCACGCCC
TCTTCACCAAACTGAAGTTTGTGCAGTATCTCAAGAGTATCCGCAAGATA
CTCGCGAACCAGCGTAAGAGTCTGTGCAAGGCGACCACCCACGTGCCAAA
GGCGATCCAGAAGAAACTCGCAAGCTTTCTAGACCAT
BO28540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
upd3-RB | 1206 | CG33542-PB | 1..1203 | 17..1219 | 5970 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
upd3-RB | 2221 | CG33542-RB | 371..1573 | 17..1219 | 5970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18283394..18283948 | 665..1219 | 2745 | 99.6 | Plus |
X | 23542271 | X | 18279433..18279883 | 19..469 | 2240 | 99.8 | Plus |
X | 23542271 | X | 18279985..18280187 | 469..671 | 1000 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:50:06 has no hits.
BO28540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:10 Download gff for
BO28540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
upd3-RB | 371..1573 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:54 Download gff for
BO28540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
upd3-RB | 371..1573 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:28 Download gff for
BO28540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
upd3-RB | 371..1573 | 17..1221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:28 Download gff for
BO28540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18279432..18279883 | 17..469 | 99 | -> | Plus |
X | 18279986..18280183 | 470..667 | 100 | -> | Plus |
X | 18283397..18283948 | 668..1221 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:54 Download gff for
BO28540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18174019..18174216 | 470..667 | 100 | -> | Plus |
arm_X | 18173465..18173916 | 17..469 | 99 | -> | Plus |
arm_X | 18177430..18177981 | 668..1221 | 99 | | Plus |
BO28540.pep Sequence
Translation from 16 to 1237
> BO28540.pep
MTTADRPLDVSRSSGSGSRSGNKTARTRNPVEPQPQPPFVDRRRRLNRNW
SLILLALAMSQFALSGGGCGVSAAPSHLATPPTDSPSSPINPTNPLKHLQ
KRSRAANFRLTFQQKLNASSTHLDWENTCNLKPTGLNETHSKAKRCKKRQ
RILQNLQNQTGRELRGIQAEDKARITTNADKLATVSTKTLDIVEKNKWRF
YKGNYRFLPRLNLTSKQLNLRHAHRDLQIYVGAFTYMRNIKLHWDLANLQ
AKSVLSDELGRMRKSAREVLCSVEEAINLTNLLYTPNRQRAPQPRGQKKR
RQAQPVVTYKILPRKLMEKRLQQFNSTLVPLVELHQQATLAARGEDVPPP
PDDLMVLEQHALFTKLKFVQYLKSIRKILANQRKSLCKATTHVPKAIQKK
LASFLDH
BO28540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
upd3-PB | 401 | CG33542-PB | 1..401 | 1..401 | 2070 | 100 | Plus |
os-PC | 413 | CG5993-PC | 24..246 | 57..306 | 187 | 27.6 | Plus |
os-PB | 413 | CG5993-PB | 24..246 | 57..306 | 187 | 27.6 | Plus |
os-PA | 413 | CG5993-PA | 24..246 | 57..306 | 187 | 27.6 | Plus |