BO28542.complete Sequence
1399 bp assembled on 2011-07-13
GenBank Submission: KX795993
> BO28542.complete
GAAGTTATCAGTCGACATGGCTCAGGTGCGACTGCTGGTACAGGGACTTC
GGCGTAGCCTACTCAATGTGGGCGTGGCCGCGCCCAACGAATCCACAGCG
ACCCACAAAAGATCGCAGCACAGCTCGTCGAGCTGCGGAGATTATGATCT
GGTTGTCGTTGGTGGTGGCATCGTCGGCGCCGCATCTGCCCGGGAGATTG
TCCTGCGCCATCCATCCCTCAAAGTGGCTGTCCTGGAGAAGGAGTGCAAG
CTGGCAAAGCACCAGAGCGGCCACAACTCCGGCGTCATCCATGCTGGCAT
CTACTATAAGCCTGGAACCCTGAAAGCCCGCCTTTGCGTGGAGGGCATGC
ATTTGGCCTACGCTTATCTGGATGAAAAAAAGATCCCGTACAAGAAAACC
GGGAAGCTAATTGTGGCCACTGATGAGAAAGAAGTGAAGCTGCTGAAGGA
TTTGGAGAAGCGTGGCATTGCCAACAACGTACCGGATCTGCGAATGATCG
AAGGCAGCGAGATTCAGGAGATCGAACCCTACTGCCAGGGAGTGATGGCG
CTCCACAGTCCGCACACTGGTATCGTTGACTGGGGATTGGTTACCGAGCA
TTATGGTCAGGATTTCAAACAGTGCGGTGGTGATATCTACCTGGACTTCA
ATGTCAGCAAGTTTACCGAGACCAAGGAGGGCACCGACTACCCAGTGACC
ATCCATGGCGCTAAGCCCGGTCAAACGGTTCGTACCAAGAACGTATTAAC
CTGTGGCGGTTTGCAATCCGACCTGCTGGCTGAGAAGACTGGATGCCCCA
GAGACCCCCGCATCGTGCCTTTCCGTGGAGAGTATCTGCTGCTGACCAAG
GAAAAACAGCATATGGTCAAGGGTAATATTTATCCGGTGCCGGATCCACG
TTTCCCCTTCCTGGGAGTTCACTTTACGCCGCGAATGGACGGATCTATCT
GGCTGGGACCAAATGCCGTTCTGGCTCTGAAACGCGAAGGTTACACCTGG
GGTGACATTAATCTTTTCGAGCTTTTCGACGCCCTGCGCTATCCGGGCTT
CGTAAAGATGGCGAGCAAGTACATCGGTTTCGGACTCAGCGAGATGTCCA
AATCGTGGTTCATTAACCTGCAGATCAAGGCGTTGCAGAAGTACATCCCG
GATATTACGGAGTACGATATCCAGCGTGGTCCCGCTGGAGTACGTGCCCA
AGCAATGGATCTGGATGGCAATCTGGTGGACGATTTTGTTTTCGATCGCG
GACAAGGATCGGGAGCGCTAGCCAAGCGAGTGCTTCACTGCAGAAACGCC
CCATCGCCGGGCGCTACTAGTAGCTTGGCCATTGCCAAGATGATCGCAGA
CAAGATCGAGAATGAGTTCTCTATCGGCAAGGCAAGCTTTCTAGACCAT
BO28542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10639-RC | 1368 | CG10639-PC | 1..1365 | 17..1381 | 6810 | 99.9 | Plus |
| CG10639-RB | 1368 | CG10639-PB | 1..1365 | 17..1381 | 6810 | 99.9 | Plus |
| CG10639-RA | 1368 | CG10639-PA | 1..1365 | 17..1381 | 6810 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10639-RC | 1870 | CG10639-RC | 336..1700 | 17..1381 | 6810 | 99.9 | Plus |
| CG10639-RB | 1685 | CG10639-RB | 151..1515 | 17..1381 | 6810 | 99.9 | Plus |
| CG10639-RA | 1945 | CG10639-RA | 411..1775 | 17..1381 | 6810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18972602..18973460 | 996..138 | 4280 | 99.9 | Minus |
| 2L | 23513712 | 2L | 18972163..18972547 | 1381..997 | 1925 | 100 | Minus |
| 2L | 23513712 | 2L | 18973917..18974038 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:50:15 has no hits.
BO28542.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:11 Download gff for
BO28542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10639-RA | 411..1775 | 17..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:10:58 Download gff for
BO28542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10639-RA | 411..1775 | 17..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:32 Download gff for
BO28542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10639-RA | 411..1775 | 17..1383 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:32 Download gff for
BO28542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18972160..18972547 | 997..1383 | 99 | <- | Minus |
| 2L | 18972602..18973459 | 139..996 | 99 | <- | Minus |
| 2L | 18973917..18974038 | 17..138 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:10:58 Download gff for
BO28542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18972160..18972547 | 997..1383 | 99 | <- | Minus |
| arm_2L | 18972602..18973459 | 139..996 | 99 | <- | Minus |
| arm_2L | 18973917..18974038 | 17..138 | 100 | | Minus |
BO28542.pep Sequence
Translation from 16 to 1399
> BO28542.pep
MAQVRLLVQGLRRSLLNVGVAAPNESTATHKRSQHSSSSCGDYDLVVVGG
GIVGAASAREIVLRHPSLKVAVLEKECKLAKHQSGHNSGVIHAGIYYKPG
TLKARLCVEGMHLAYAYLDEKKIPYKKTGKLIVATDEKEVKLLKDLEKRG
IANNVPDLRMIEGSEIQEIEPYCQGVMALHSPHTGIVDWGLVTEHYGQDF
KQCGGDIYLDFNVSKFTETKEGTDYPVTIHGAKPGQTVRTKNVLTCGGLQ
SDLLAEKTGCPRDPRIVPFRGEYLLLTKEKQHMVKGNIYPVPDPRFPFLG
VHFTPRMDGSIWLGPNAVLALKREGYTWGDINLFELFDALRYPGFVKMAS
KYIGFGLSEMSKSWFINLQIKALQKYIPDITEYDIQRGPAGVRAQAMDLD
GNLVDDFVFDRGQGSGALAKRVLHCRNAPSPGATSSLAIAKMIADKIENE
FSIGKASFLDH
BO28542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10639-PC | 455 | CG10639-PC | 1..455 | 1..455 | 2390 | 100 | Plus |
| CG10639-PB | 455 | CG10639-PB | 1..455 | 1..455 | 2390 | 100 | Plus |
| CG10639-PA | 455 | CG10639-PA | 1..455 | 1..455 | 2390 | 100 | Plus |
