BO28543.complete Sequence
1870 bp assembled on 2011-08-04
GenBank Submission: KX799989
> BO28543.complete
GAAGTTATCAGTCGACATGGCCAGTATTTCTAAGAGCCGCGCCAGCAGCT
GCTCCTCCAGAAAGAGGCTGCATCTGCAACCGGGATCGCTGCTCTGCGTG
ATCGTCTTCTGCCTGCTGGCTTCGTGCTCGGCTCAGCCAATCGAGTCAAC
CTCATTGCCTGCAGAAGTGGACGATGTGGAGGGTACCACAATACTTCCCA
TCCAGTTGGAGGAGAGTTCACCAACACCAGAACCCATTATCAAGAATGAA
ACAGCTACTGCTCTTCCTGTCGTGGAACTCAAAGTAGCTGAATCTAATCC
TGTAGATCCTGTTGAGGCTACGGATAATTTTGTATCGGTTTACGGCGGAA
ATCTGGAGCAGGATATAAAGAACGACGTGAACAGCGAAGTGGAAGATGCG
CCCTCTCCGGTGGAACCAATCATCGAGGAAGTTCAAAAAGTGGCAGAAGC
TGAACTTGAAAATCATGAAATTAAGCTTGCGGTCCAAAGTGCTCGGGAGC
CCAAATCCCTGGATGCTGAAGAGGAGTCAAAGACAATCGATGAAGATCGC
TTGGAAAATCAAGATAAAGCGGAGACAGTAACGGATAACATTGCCGTTTC
CAGTGAGCAGATGGAGAGCCACATCAGACCATTACCCAACGTGACCAGTG
ACCTGGTTTCCGTGATTCTCAACGAAGACAAAGCCATCACTGAGCAACCG
ATCACCAAAACGAACCTTCTGGCTTTGGAGCAGGAGCACGAGAAATTCGA
GGAAATTGATGAAAGTACTACAGTGCCAGTTTATGAGGAGCCCAAGCACC
AAGTCACCAAGAAACAAGGCGTTGAGGACCCATCTACCGTTGAAATTCCA
CCTGAGGTATCTGACGAACAACACTTTGATCCTTCCGAGGAACCCCAGAC
TGTTCGCGACGAACGTAATCTTGAAGAGCACGACGACAACCAGAATGAGA
TAAATGAGAACATCATTGAAGGGGAGGAGGCTCCAGCCAAAACGTCAACC
ACCGCAGGTCCCTTGGTCACCGTGGAACCCACTAAATCGATTACCGAGCC
AAATGAGGAGATCGAGAAAAAGGCGGAAGCTGAGGCTAAGGCGGAAATGG
AGGAGCAAGTGGAGGTCAACACTCCTTCTGTAGACGCAACTGTGGTGGCA
GCGGATCCTGATGAAGCACAAGATGAAGTAATCGTTGCTGAAACAACAGT
AGAAGCTATCACAGAAGCTGCCAAGATTGTTGTGGAGGAGGAACCCAAGG
AAGATGTTTCAGTTCAACAGGAGCATCTAAAGGAACAAAGAGTCCAGACA
GTTTCCGAGTCCAACCGTCAAGCAAGTCCCACCGAGGAACCAATCAAAGA
AGTGATCTTTCCAAAAGGTGATGATGAATCCCCGGTAGAAGGGGATAGCT
CCGAATCGGATGAGAAACCAACTGAGAGAGCAATAGTGGATGACGACTCC
TCGGAGGAGCAAAACGAGGACGTTGTGGATGAGGGAAAGTCCTCTTCCGA
CGACAGCACCGCCACTCCGCTTGTCTCCTATCCCCCACACGATGCTGGCC
AAACCTTCGATAGCAACTCGGCTGACGAACACTCGGCCCAGCTGTCCGGA
GCCACCAACTACCGGTCCACCCTGATCATAGCCCTGTGCTCCGGCACAGC
AGTGATCTTCATCGTGGCCTCGCTGGTCATCTTCGTGGTTTCCTTCCAAC
GGCAGCACGGCACCTTGGACATTGAGATGCAGGAACAGCGTTTGGGCAAG
GATATTCAGGAAGAGGACAATGTCCAGATGAAGCTGCTCGATGTGGATCT
CTCGTCGCCCGTCATTCTGCCTATGGGCAACGAGGAGACCGATGAATGCC
TGGCAAGCTTTCTAGACCAT
BO28543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtg-RA | 1839 | CG6234-PA | 1..1836 | 17..1852 | 9150 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtg-RA | 2464 | CG6234-RA | 302..2137 | 17..1852 | 9150 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12651208..12652583 | 477..1852 | 6850 | 99.9 | Plus |
| 3R | 32079331 | 3R | 12650814..12651149 | 141..476 | 1680 | 100 | Plus |
| 3R | 32079331 | 3R | 12648359..12648482 | 17..140 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:56:22 has no hits.
BO28543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:54 Download gff for
BO28543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6234-RA | 300..2135 | 17..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:16 Download gff for
BO28543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6234-RA | 302..2137 | 17..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:10 Download gff for
BO28543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dtg-RA | 302..2137 | 17..1854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:10 Download gff for
BO28543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12648359..12648482 | 17..140 | 100 | -> | Plus |
| 3R | 12650814..12651149 | 141..476 | 100 | -> | Plus |
| 3R | 12651208..12652583 | 477..1854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:16 Download gff for
BO28543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8474081..8474204 | 17..140 | 100 | -> | Plus |
| arm_3R | 8476536..8476871 | 141..476 | 100 | -> | Plus |
| arm_3R | 8476930..8478305 | 477..1854 | 99 | | Plus |
BO28543.pep Sequence
Translation from 16 to 1870
> BO28543.pep
MASISKSRASSCSSRKRLHLQPGSLLCVIVFCLLASCSAQPIESTSLPAE
VDDVEGTTILPIQLEESSPTPEPIIKNETATALPVVELKVAESNPVDPVE
ATDNFVSVYGGNLEQDIKNDVNSEVEDAPSPVEPIIEEVQKVAEAELENH
EIKLAVQSAREPKSLDAEEESKTIDEDRLENQDKAETVTDNIAVSSEQME
SHIRPLPNVTSDLVSVILNEDKAITEQPITKTNLLALEQEHEKFEEIDES
TTVPVYEEPKHQVTKKQGVEDPSTVEIPPEVSDEQHFDPSEEPQTVRDER
NLEEHDDNQNEINENIIEGEEAPAKTSTTAGPLVTVEPTKSITEPNEEIE
KKAEAEAKAEMEEQVEVNTPSVDATVVAADPDEAQDEVIVAETTVEAITE
AAKIVVEEEPKEDVSVQQEHLKEQRVQTVSESNRQASPTEEPIKEVIFPK
GDDESPVEGDSSESDEKPTERAIVDDDSSEEQNEDVVDEGKSSSDDSTAT
PLVSYPPHDAGQTFDSNSADEHSAQLSGATNYRSTLIIALCSGTAVIFIV
ASLVIFVVSFQRQHGTLDIEMQEQRLGKDIQEEDNVQMKLLDVDLSSPVI
LPMGNEETDECLASFLDH
BO28543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtg-PA | 612 | CG6234-PA | 1..612 | 1..612 | 3067 | 100 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 4131..4571 | 62..496 | 195 | 22 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 4131..4571 | 62..496 | 195 | 22 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3581..4041 | 63..497 | 194 | 21.7 | Plus |
| Strn-Mlck-PV | 7944 | CG44162-PV | 3620..4080 | 63..497 | 194 | 21.7 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4226..4691 | 42..497 | 188 | 21.1 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3383..3846 | 72..497 | 187 | 21.3 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3493..3911 | 107..497 | 187 | 21.6 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 8182..8586 | 65..496 | 182 | 25.3 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 8182..8586 | 65..496 | 182 | 25.3 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4556..5007 | 63..496 | 182 | 22.4 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 4247..4672 | 42..496 | 181 | 23.3 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 4247..4672 | 42..496 | 181 | 23.3 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 3841..4301 | 63..497 | 174 | 20.3 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 4369..4773 | 65..496 | 172 | 23.6 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 5097..5488 | 64..458 | 172 | 22.7 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 4369..4773 | 65..496 | 172 | 23.6 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 5097..5488 | 64..458 | 172 | 22.7 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 2732..3175 | 84..496 | 170 | 21.8 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 2732..3175 | 84..496 | 170 | 21.8 | Plus |
| Strn-Mlck-PT | 7905 | CG44162-PT | 4751..5163 | 63..486 | 168 | 20.7 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 4571..4975 | 65..496 | 165 | 22.9 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 4571..4975 | 65..496 | 165 | 22.9 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 3175..3541 | 65..459 | 162 | 25.7 | Plus |
| Msp300-PE | 9606 | CG42768-PE | 8283..8686 | 65..495 | 162 | 24.8 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 3175..3541 | 65..459 | 162 | 25.7 | Plus |
| Msp300-PG | 13540 | CG42768-PG | 8283..8686 | 65..495 | 162 | 24.8 | Plus |
