BO28545.complete Sequence
934 bp assembled on 2011-07-13
GenBank Submission: KX797359
> BO28545.complete
GAAGTTATCAGTCGACATGATGACGCCCATGTGGATATCGCTGTTCAAAG
TCCTGCTGCTGCTGTTCGCCTTCTTTGCCACGACGTCCGCGGACAGTGCA
CCCTTCATGCCCATACCCACCCAGCACGACGATCCGACCCAGAAACAGAA
ACAGAATCAGAATCAATCTCCGATACCCGAAACGAACCGCCATTACCATC
AGTATCACAGCCTGATCCAACCAGATCAGTACTTCAAAGTGCAGCGCTCC
CCGAATGGAAAGCTGAATCTGGTCTTTAACGATACGTTCGTATCTTTGCA
GAGGACGGACACGGAGGTGCAATCCGAACAGCCGATACCCCCCCGACATC
CATCGGATACCTTTGTCTTCCCCGATTCCCCCATAGCCAAGTATCGGCCA
CCACAATCCCCAGCTCGTCCTTTGAGGAATGACACTAAGGAGCACAATCC
CTGCGCCAAGGATGAAAGCCAACACCTTAGAAACTTCTGCACGAATGTGG
ACGACTATCCGGACCTTTCAGGCCTCACACATAAGCTAAAAAACAACTTC
GCCAAGTTCTTTAGCAACGATCTTCAGCCCACGGATGTGAGCTCTCGCGT
TGGTGGCTCAGATGAGCGATTCCTTTGCAGGAGCATCAGGAAGCTGGTGT
ACCCAAAAAAGGGCTTGAGGGCGGACGACACCTGGCAGTTAATTGTCAAT
AACGATGAGTACAAACAGGCCATCCAGATCGAAGAGTGCGAAGGAGCGGA
TCAACCCTGTGACTTTGCCGCCAACTTTCCGCAGAGCTATAATCCAATCT
GCAAGCAGCACTACACACAGCAGACCCTGGCCAGCATCAAGAGTGATGGC
GAACTGGACGTGGTGCAGAATTCCTTCAAGATCCCCTCCTGCTGCAAGTG
CGCGTTGAAGACTGGGGCAAGCTTTCTAGACCAT
BO28545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:51:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz-RB | 903 | CG6134-PB | 1..900 | 17..916 | 4410 | 99.3 | Plus |
| spz-RA | 981 | CG6134-PA | 145..978 | 83..916 | 4080 | 99.3 | Plus |
| spz-RD | 822 | CG6134-PD | 202..819 | 299..916 | 3000 | 99 | Plus |
| spz-RA | 981 | CG6134-PA | 1..66 | 17..82 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz-RB | 2050 | CG6134-RB | 861..1761 | 16..916 | 4415 | 99.3 | Plus |
| spz-RA | 2128 | CG6134-RA | 1006..1839 | 83..916 | 4080 | 99.3 | Plus |
| spz-RD | 1969 | CG6134-RD | 1063..1680 | 299..916 | 3000 | 99 | Plus |
| spz-RA | 2128 | CG6134-RA | 861..927 | 16..82 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27066099..27066480 | 741..360 | 1865 | 99.2 | Minus |
| 3R | 32079331 | 3R | 27066608..27066885 | 359..82 | 1390 | 100 | Minus |
| 3R | 32079331 | 3R | 27065857..27066031 | 916..742 | 830 | 98.3 | Minus |
| 3R | 32079331 | 3R | 27069144..27069210 | 82..16 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:51:56 has no hits.
BO28545.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:12 Download gff for
BO28545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RB | 860..1759 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:46 Download gff for
BO28545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RB | 862..1761 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:14 Download gff for
BO28545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RB | 862..1761 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:14 Download gff for
BO28545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27065854..27066031 | 742..918 | 97 | <- | Minus |
| 3R | 27066099..27066480 | 360..741 | 99 | <- | Minus |
| 3R | 27066608..27066884 | 83..359 | 100 | <- | Minus |
| 3R | 27069144..27069209 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:46 Download gff for
BO28545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22891576..22891753 | 742..918 | 97 | <- | Minus |
| arm_3R | 22891821..22892202 | 360..741 | 99 | <- | Minus |
| arm_3R | 22892330..22892606 | 83..359 | 100 | <- | Minus |
| arm_3R | 22894866..22894931 | 17..82 | 100 | | Minus |
BO28545.pep Sequence
Translation from 16 to 934
> BO28545.pep
MMTPMWISLFKVLLLLFAFFATTSADSAPFMPIPTQHDDPTQKQKQNQNQ
SPIPETNRHYHQYHSLIQPDQYFKVQRSPNGKLNLVFNDTFVSLQRTDTE
VQSEQPIPPRHPSDTFVFPDSPIAKYRPPQSPARPLRNDTKEHNPCAKDE
SQHLRNFCTNVDDYPDLSGLTHKLKNNFAKFFSNDLQPTDVSSRVGGSDE
RFLCRSIRKLVYPKKGLRADDTWQLIVNNDEYKQAIQIEECEGADQPCDF
AANFPQSYNPICKQHYTQQTLASIKSDGELDVVQNSFKIPSCCKCALKTG
ASFLDH
BO28545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz-PB | 300 | CG6134-PB | 1..300 | 1..300 | 1628 | 100 | Plus |
| spz-PA | 326 | CG6134-PA | 1..326 | 1..300 | 1591 | 92 | Plus |
| spz-PL | 270 | CG6134-PL | 1..270 | 1..300 | 1422 | 90 | Plus |
| spz-PD | 273 | CG6134-PD | 1..273 | 1..300 | 1189 | 78 | Plus |
| spz-PC | 253 | CG6134-PC | 1..253 | 1..300 | 1181 | 78.1 | Plus |
