BO28547.complete Sequence
997 bp assembled on 2011-07-13
GenBank Submission: KX799418
> BO28547.complete
GAAGTTATCAGTCGACATGCACCAGGAGCACATGGACCTGCATGAGCCCG
TGGACTTGAACAAGTCCCTGGACGAAATGACGCCGGAGGAGCGAATGCGA
GCGCAGCATCAACTGATGGTGGAGAAACATCGCGGCCACGATGCCATGCA
CTCCGAGATGGTGATCATTCTGTTCGTCACCCTGGTTATTGCCCAGATCA
TCCTGGTCGAGTGGAAGAAGCGGCACTACAGATCCTACGCTTTCGTCACC
CTGCTGGCCATGTGGCTCATTCCGCTGATCATCTCCTGCAGCTTCGGCTG
GCTGCGCTTCATAATCATCTGGCTGGTGTTCACCTGCATCACGGCACTGG
TTATGCGACGGGCCATCAGCAAGCCCATCCAGGGCACAACGCCTAGGCTG
GTCTACAAGTGGTTCTACTTCATCTACAAGCTCAGCTATGGCCTTGGCCT
GGTGGGCTATCTGGTGATCATAGCCGCCTTTCTGGGCATGAATTACATGT
TCTCACAGCCACCAAACACATGGATGGATGTGGGCCTGATGTTCTGCTTC
TACGGCCTGTACATCGGCGTCCTGGGGCGTGATATATCCGAGATATGTTC
GGATAAGATGGCGGCAGCTATTGGCTACTACACACCTCAGGGTATTCCAA
CACGACATCTTGATCAGAATGTCTGCGCAGTGTGTGGCAATCAGTTGCTG
GTCTCGGAGAAGGAAGAGGGCGTCATTGAGAACACCTACAAGTTGTCTTG
TAACCACGTATTCCACGAGTTCTGTATACGTGGTTGGTGCATTGTGGGCA
AGAAGCAGACGTGTCCCTACTGCAAGGAAAAGGTCGATCTCCAGAAGATG
TTCCGCAATCCCTGGGAGAAGCCGCACGTTTTGTACGGTCGCCTGCTGGA
TTGGATTCGTTGGCTGGTGGCCTGGCAGCCGCTCATCTTTTTCATAGTAC
AAGGCATCAACTGGATGCTGGGACTGGAGGCAAGCTTTCTAGACCAT
BO28547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15814-RC | 966 | CG15814-PC | 1..963 | 17..979 | 4815 | 100 | Plus |
| CG15814-RA | 966 | CG15814-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
| CG15814-RB | 966 | CG15814-PB | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15814-RC | 1740 | CG15814-RC | 244..1206 | 17..979 | 4815 | 100 | Plus |
| CG15814-RA | 1884 | CG15814-RA | 388..1350 | 17..979 | 4815 | 100 | Plus |
| CG15814-RB | 1664 | CG15814-RB | 168..1130 | 17..979 | 4815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17849413..17849711 | 397..99 | 1495 | 100 | Minus |
| X | 23542271 | X | 17848819..17849054 | 861..626 | 1180 | 100 | Minus |
| X | 23542271 | X | 17849117..17849347 | 625..395 | 1155 | 100 | Minus |
| X | 23542271 | X | 17848644..17848761 | 979..862 | 590 | 100 | Minus |
| X | 23542271 | X | 17849908..17849955 | 64..17 | 240 | 100 | Minus |
| X | 23542271 | X | 17849776..17849812 | 99..63 | 185 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osvaldo | 1543 | Osvaldo OSV 1543bp | 263..299 | 291..255 | 113 | 78.4 | Minus |
BO28547.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 12:47:02 Download gff for
BO28547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15814-RC | 179..1141 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:22 Download gff for
BO28547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15814-RB | 168..1130 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:51 Download gff for
BO28547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15814-RB | 168..1130 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:51 Download gff for
BO28547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17848642..17848761 | 862..981 | 98 | <- | Minus |
| X | 17848819..17849054 | 626..861 | 100 | <- | Minus |
| X | 17849117..17849345 | 397..625 | 100 | <- | Minus |
| X | 17849414..17849710 | 100..396 | 100 | <- | Minus |
| X | 17849776..17849810 | 65..99 | 100 | <- | Minus |
| X | 17849908..17849955 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:22 Download gff for
BO28547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17742675..17742794 | 862..981 | 98 | <- | Minus |
| arm_X | 17742852..17743087 | 626..861 | 100 | <- | Minus |
| arm_X | 17743150..17743378 | 397..625 | 100 | <- | Minus |
| arm_X | 17743447..17743743 | 100..396 | 100 | <- | Minus |
| arm_X | 17743809..17743843 | 65..99 | 100 | <- | Minus |
| arm_X | 17743941..17743988 | 17..64 | 100 | | Minus |
BO28547.pep Sequence
Translation from 16 to 997
> BO28547.pep
MHQEHMDLHEPVDLNKSLDEMTPEERMRAQHQLMVEKHRGHDAMHSEMVI
ILFVTLVIAQIILVEWKKRHYRSYAFVTLLAMWLIPLIISCSFGWLRFII
IWLVFTCITALVMRRAISKPIQGTTPRLVYKWFYFIYKLSYGLGLVGYLV
IIAAFLGMNYMFSQPPNTWMDVGLMFCFYGLYIGVLGRDISEICSDKMAA
AIGYYTPQGIPTRHLDQNVCAVCGNQLLVSEKEEGVIENTYKLSCNHVFH
EFCIRGWCIVGKKQTCPYCKEKVDLQKMFRNPWEKPHVLYGRLLDWIRWL
VAWQPLIFFIVQGINWMLGLEASFLDH
BO28547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15814-PC | 321 | CG15814-PC | 1..321 | 1..321 | 1754 | 100 | Plus |
| CG15814-PA | 321 | CG15814-PA | 1..321 | 1..321 | 1754 | 100 | Plus |
| CG15814-PB | 321 | CG15814-PB | 1..321 | 1..321 | 1754 | 100 | Plus |
| CG15814-PD | 301 | CG15814-PD | 1..301 | 21..321 | 1644 | 100 | Plus |
