BO28549.complete Sequence
1972 bp assembled on 2011-08-04
GenBank Submission: KX796002
> BO28549.complete
GAAGTTATCAGTCGACATGGCCGTTTTTGCGAGCAGATATGAACGGAAAT
TGCCAATTGACGACACCCAGGCGCTGAGCTGCGAGATAACCGCCGTCCAG
GAGGTCGCCGGACATACGGAGTACCTGCTGCGCGTGTGGAGGGGCGCCAG
CAACAAGAACTACTGGACCGTTTTGCGCCGCTATAATGACTTCGACCGAC
TGGACAAGTCTCTCCGCGTCTCCGGCATCGAGCTGCCGCTGCCTCGCAAA
CGCATCTTTGGTAACATGCGCCCGGAGTTCATAGCTGAACGGAAGCAAGC
CCTGCAAGAGTACATAAACGCCGTACTAATGAATCCCATATTGGCATCCT
CGCTGCCAGCCAAGCGCTTTGTGGATCCCGAGAGTTACTCGCAGTCCTTT
CACGACCATGCCGTGCAGAATGCTATGCTCTGCCTGCGCAACGACACTAC
GTGGTCGCTGGGTGGAAGTATGGGTGCCATAGGCTGGCGCCTCCGGAAGC
ACTACTTTAAGGTCACTACAAAGCCGCCGGAGAAGAGCAGCAACAAGCAA
CTGGTTAAGAGCGGTTCACAGACCCATCAGAGCAAACATTTCGCCGCTGG
GAGCAGCAATGGCAGCGGTCACTCCATCGACGCCGGAACCTTGGATCCCG
GGTCAGAGGTGGTGGCTGAGTGGCTGGAGTACGGACCCGACAAGTTTATC
GACGAAAAAGAAATCGGGGGCATAATGAAAAGCCTGATGGGCCTGCAGCA
TCCGCACATCGAGCCCGTTCTCCTGGCAGCCCACACCGAAAACGGTTGCC
TGGTCATAAGAAAATTCCACAAGCATGGTACTTTAAAGGATGTTTTGTGC
ATGGCCGCGAATCCAAAGAATACATTTCTTAGCAAGTACGGCAATCCCAA
GGGGCGCACTGCGCTTTCAATGAAACAAGTGGCTACATATGGGAAGCAGA
TTCTAGAGGCCCTAATATTTTTGCACTCGAAGGGATACGCATATGGTCAT
CTACATTCCGGAAACATAGTGATAGTCGACGATTGTGTTAAGCTACTGGA
CATCGAGAACTTTTTGCTGGGCGTTCCAGCGTTTTACCGGCCATTTTTCA
TGCAGCACAGTAAAATCCATGCCATCGAGACCATTGATGTTTACTGTTTT
GGTCATGTCCTCTTCGAAATGGCCATGGGTTATCCTCTGCAGGAGTCTGT
CGTGCGCCAGATCACCGAATGTCCCGAAGCGCTGAAATGTCTTCTGGAGA
GCATTCTTTCCAAGGAAGCTTGCAAAGCTGGCCTGCCGACTCTGGAGCAA
TTGTTGGGTCACAGATTCTTCTTGCAATACGCTTCAACCGAGAGCGCCGG
CGCCGCTGCCAATGCTGAAAAGCCGTACTTTAAGCTATCATTGAACGCCA
AGGAGCTGCTTAAGCAGGCGGCTATCAAGAGCGAAAACCGCCTGCGGGAC
GAACAGAAGTCTGTGAAGAACCAAAAGCGCATTGTGCGTGTCCAGGAACT
GATGAGCTCCGAGGAGGAGAAGCGGAAGTCCAAGCAGAAAGCCAAACTAG
AGCACAAACAGTCGAAGCTAAAGCAGCAAAGTTCAATCCAAACAAACAAT
GGACGCTTGTCGCTTGTGGCTGCGACTGCAGCAGCAGCTTCCTCAAGCAC
CACGGTGGTTGGCGAGTTATGTGGGACCGACTCCTTCAACCGCTCCGACA
GCACACCCGAGGAGCCCACCACACTGGCCGGCATCAAATCACCGCCGCTC
ACTCCGGGGCCACACTTGGGCAGCATATATCAGCAGGAATTGCCGTCGAC
GACTGGCGCACCGGTGGAACGGCAGTCCTCCACACCGAACATGCTGTCTG
AGGATGCGGAGGGCGGTGATGGCGACGAGCCAACACGCTCCGCTCTTCTG
GAGTCCATCTGCAAGTTTAACCGCGGATCGCTGCGCAAAGTGCGATCCAA
CGACGCAAGCTTTCTAGACCAT
BO28549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8726-RB | 1941 | CG8726-PB | 1..1938 | 17..1954 | 9690 | 100 | Plus |
| CG8726-RA | 1692 | CG8726-PA | 1..1689 | 266..1954 | 8445 | 100 | Plus |
| CG8726-RC | 1323 | CG8726-PC | 1..1278 | 266..1543 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8726-RB | 3336 | CG8726-RB | 266..2203 | 17..1954 | 9690 | 100 | Plus |
| CG8726-RA | 3371 | CG8726-RA | 402..2238 | 118..1954 | 9185 | 100 | Plus |
| CG8726-RC | 3470 | CG8726-RC | 402..1827 | 118..1543 | 7130 | 100 | Plus |
| CG8726-RA | 3371 | CG8726-RA | 266..368 | 17..119 | 515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7970774..7971183 | 813..404 | 2050 | 100 | Minus |
| 2R | 25286936 | 2R | 7969869..7970176 | 1543..1236 | 1540 | 100 | Minus |
| 2R | 25286936 | 2R | 7971244..7971530 | 404..118 | 1435 | 100 | Minus |
| 2R | 25286936 | 2R | 7970235..7970475 | 1235..995 | 1205 | 100 | Minus |
| 2R | 25286936 | 2R | 7969262..7969476 | 1954..1740 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 7969574..7969769 | 1739..1544 | 980 | 100 | Minus |
| 2R | 25286936 | 2R | 7970530..7970713 | 997..814 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 7971636..7971738 | 119..17 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:57:18 has no hits.
BO28549.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:55 Download gff for
BO28549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RB | 312..2249 | 17..1956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:48 Download gff for
BO28549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RB | 266..2203 | 17..1956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:37 Download gff for
BO28549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8726-RB | 266..2203 | 17..1956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:37 Download gff for
BO28549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7969258..7969476 | 1740..1956 | 99 | <- | Minus |
| 2R | 7969574..7969769 | 1544..1739 | 100 | <- | Minus |
| 2R | 7969869..7970176 | 1236..1543 | 100 | <- | Minus |
| 2R | 7970235..7970474 | 996..1235 | 100 | <- | Minus |
| 2R | 7970532..7970713 | 814..995 | 100 | <- | Minus |
| 2R | 7970774..7971182 | 405..813 | 100 | <- | Minus |
| 2R | 7971244..7971529 | 119..404 | 100 | <- | Minus |
| 2R | 7971637..7971738 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:48 Download gff for
BO28549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3856763..3856981 | 1740..1956 | 99 | <- | Minus |
| arm_2R | 3857079..3857274 | 1544..1739 | 100 | <- | Minus |
| arm_2R | 3857374..3857681 | 1236..1543 | 100 | <- | Minus |
| arm_2R | 3857740..3857979 | 996..1235 | 100 | <- | Minus |
| arm_2R | 3858037..3858218 | 814..995 | 100 | <- | Minus |
| arm_2R | 3858279..3858687 | 405..813 | 100 | <- | Minus |
| arm_2R | 3858749..3859034 | 119..404 | 100 | <- | Minus |
| arm_2R | 3859142..3859243 | 17..118 | 100 | | Minus |
BO28549.pep Sequence
Translation from 16 to 1972
> BO28549.pep
MAVFASRYERKLPIDDTQALSCEITAVQEVAGHTEYLLRVWRGASNKNYW
TVLRRYNDFDRLDKSLRVSGIELPLPRKRIFGNMRPEFIAERKQALQEYI
NAVLMNPILASSLPAKRFVDPESYSQSFHDHAVQNAMLCLRNDTTWSLGG
SMGAIGWRLRKHYFKVTTKPPEKSSNKQLVKSGSQTHQSKHFAAGSSNGS
GHSIDAGTLDPGSEVVAEWLEYGPDKFIDEKEIGGIMKSLMGLQHPHIEP
VLLAAHTENGCLVIRKFHKHGTLKDVLCMAANPKNTFLSKYGNPKGRTAL
SMKQVATYGKQILEALIFLHSKGYAYGHLHSGNIVIVDDCVKLLDIENFL
LGVPAFYRPFFMQHSKIHAIETIDVYCFGHVLFEMAMGYPLQESVVRQIT
ECPEALKCLLESILSKEACKAGLPTLEQLLGHRFFLQYASTESAGAAANA
EKPYFKLSLNAKELLKQAAIKSENRLRDEQKSVKNQKRIVRVQELMSSEE
EKRKSKQKAKLEHKQSKLKQQSSIQTNNGRLSLVAATAAAASSSTTVVGE
LCGTDSFNRSDSTPEEPTTLAGIKSPPLTPGPHLGSIYQQELPSTTGAPV
ERQSSTPNMLSEDAEGGDGDEPTRSALLESICKFNRGSLRKVRSNDASFL
DH
BO28549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8726-PB | 646 | CG8726-PB | 1..646 | 1..646 | 3340 | 100 | Plus |
| CG8726-PA | 563 | CG8726-PA | 1..563 | 84..646 | 2906 | 100 | Plus |
| CG8726-PC | 440 | CG8726-PC | 1..426 | 84..509 | 2212 | 100 | Plus |
| Slob-PG | 459 | CG43756-PG | 175..433 | 236..482 | 240 | 30.7 | Plus |
| Slob-PA | 515 | CG43756-PA | 231..489 | 236..482 | 240 | 30.7 | Plus |
