BO28552.complete Sequence
1603 bp assembled on 2011-07-13
GenBank Submission: KX796073
> BO28552.complete
GAAGTTATCAGTCGACATGGTGGGAATTATCGATGAGGTGCAGCTTTTTT
ATCCCCTAGGAACCCGCATCAAAATTGGGGACAACTACGGCACAGTGCGT
TATGTGGGAGAGGTGAGCGGCCATATGGGTAGCTGGCTGGGAATAGAATG
GGACGACGGACTGCGTGGCAAACACAACGGCATCGTGGACGGCAAGCGCT
ACTTTCAGACGCAGACACCCACGGGAGGCAGCTTCATCCGACCGGGAAAG
GTAGGGCCTTGTGCCACCCTGGAGGACGCTGCTCGGGAGCGGTACCTAAA
CTACGACTCGAGCAACGTCGACGAGTCTCTTATCCGGGAAGCTCAGGCCA
GCCTGCAGGCGTCGCTTTTTGAAGTCGTGGGCATGGACAAGATCGCTCGC
AAGCAAAGCAAGTTCGAGCAACTGGAGGAGGTGAGTGTAGACCAGACGCC
GGTAAACGCTGCCGGTTACCTGAAGGAGTTGACACACCTCACAACGTTGA
ACGTAAGCCATACCTTAATCTGGAATTGGGAGATCGTGGCCAGTATAGCG
CAACAGCTACCCTCCTTAACCAACCTGAACCTGAGCTCCAACCGATTGGT
CCTGCCCACGTCATCCCAAATCACTGAGCTTGAGCCCTCATTTCGGCAGC
TCAAACGCATCAACCTTCGCAGTTGTGGCTTTTCCGACTGGAAGGATGTA
ATGCACACAGCGCTTCTCTGGCCAAATATTTTGTCACTGGGCTTACAGGA
GAATTCACTCGGCCAGCTAGCAGAAGTCGATCGAACAAAGATATTTAAGC
AGCTACATGAACTCGACTTACACCGCACGAACATTATGGATTTTGACCAG
GTGACAAAGTTGGGCAACCTCACGACTTTGCGCTTACTGAATATCATGGA
GAATGGTATCGAGGAGATAAAACTTCCCGACTGTGATTCACAAGAAAAGC
TTAATATTTTTGTCTCGCTGGAGCAGCTGAACCTGCTTCACAATCCCATT
TGGAATGAGGCTGATGCGTTTAACGAGCTGGACAAGCTGCCACAGCTGAA
ACGCCTGAGTAAGACTCCGCACTTAAAGTCAAACTTTGATGAAATGTTCT
CCAAAGCTGTAGCTAGCATAGCCAGCCTGCAGTTCATTAATAAAGCCGAG
GTGACAGCGGAACAGAGACGTGGAGCCGAGTACGATATTTGGAAAAAGTA
TGCTCTAGATTGGATGCAGGCGACGCAAGGGGGGACAGATTCCTTACGGG
AGTTTTGCCGAAGACATCGCACCTACCCCCTGCTGGTTAAAAAGTACGGT
TCCCCGGCAGACTTTGTACCGCGTAGTCAAGCGAAGCAGTCGAATTTGAT
TAATGTTTCCATAAGACATCAGCTGACGGGCGAAACCTGGGAGAAGAAAG
TCCCGCGAATGATTACTGTGCAGACGCTGCAGGGATTGGTTATGAAGCGA
TTCCGGTTAAGCGGTGACGTCCCGCAGCTTTGCTACGTTGATGCGTTGCA
TCCGGATCTTGTGGTACCATTGGATAACAATGCTAAAACACTGGACTTTT
ATTCTGTACAGGAGCATGATACAGTTTTGGTTCAAGCAAGCTTTCTAGAC
CAT
BO28552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:33:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbce-RC | 1572 | CG7861-PC | 1..1569 | 17..1585 | 7815 | 99.9 | Plus |
| Tbce-RB | 1572 | CG7861-PB | 1..1569 | 17..1585 | 7815 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbce-RC | 2144 | CG7861-RC | 338..1906 | 17..1585 | 7815 | 99.9 | Plus |
| Tbce-RB | 2080 | CG7861-RB | 274..1842 | 17..1585 | 7815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6043091..6043565 | 111..585 | 2345 | 99.6 | Plus |
| 2R | 25286936 | 2R | 6043613..6044039 | 584..1010 | 2135 | 100 | Plus |
| 2R | 25286936 | 2R | 6044434..6044726 | 1293..1585 | 1465 | 100 | Plus |
| 2R | 25286936 | 2R | 6044094..6044378 | 1008..1292 | 1425 | 100 | Plus |
| 2R | 25286936 | 2R | 6042928..6043029 | 17..118 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:33:46 has no hits.
BO28552.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 13:04:22 Download gff for
BO28552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tbce-RB | 274..1842 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:11 Download gff for
BO28552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tbce-RB | 274..1842 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:28 Download gff for
BO28552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbce-RB | 274..1842 | 17..1587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:28 Download gff for
BO28552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6043093..6043565 | 113..585 | 99 | -> | Plus |
| 2R | 6043615..6044038 | 586..1009 | 100 | -> | Plus |
| 2R | 6044096..6044378 | 1010..1292 | 100 | -> | Plus |
| 2R | 6044434..6044726 | 1293..1587 | 99 | | Plus |
| 2R | 6042928..6043023 | 17..112 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:11 Download gff for
BO28552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1930433..1930528 | 17..112 | 100 | -> | Plus |
| arm_2R | 1930598..1931070 | 113..585 | 99 | -> | Plus |
| arm_2R | 1931120..1931543 | 586..1009 | 100 | -> | Plus |
| arm_2R | 1931601..1931883 | 1010..1292 | 100 | -> | Plus |
| arm_2R | 1931939..1932231 | 1293..1587 | 99 | | Plus |
BO28552.pep Sequence
Translation from 16 to 1603
> BO28552.pep
MVGIIDEVQLFYPLGTRIKIGDNYGTVRYVGEVSGHMGSWLGIEWDDGLR
GKHNGIVDGKRYFQTQTPTGGSFIRPGKVGPCATLEDAARERYLNYDSSN
VDESLIREAQASLQASLFEVVGMDKIARKQSKFEQLEEVSVDQTPVNAAG
YLKELTHLTTLNVSHTLIWNWEIVASIAQQLPSLTNLNLSSNRLVLPTSS
QITELEPSFRQLKRINLRSCGFSDWKDVMHTALLWPNILSLGLQENSLGQ
LAEVDRTKIFKQLHELDLHRTNIMDFDQVTKLGNLTTLRLLNIMENGIEE
IKLPDCDSQEKLNIFVSLEQLNLLHNPIWNEADAFNELDKLPQLKRLSKT
PHLKSNFDEMFSKAVASIASLQFINKAEVTAEQRRGAEYDIWKKYALDWM
QATQGGTDSLREFCRRHRTYPLLVKKYGSPADFVPRSQAKQSNLINVSIR
HQLTGETWEKKVPRMITVQTLQGLVMKRFRLSGDVPQLCYVDALHPDLVV
PLDNNAKTLDFYSVQEHDTVLVQASFLDH
BO28552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbce-PC | 523 | CG7861-PC | 1..523 | 1..523 | 2715 | 100 | Plus |
| Tbce-PB | 523 | CG7861-PB | 1..523 | 1..523 | 2715 | 100 | Plus |
