BO28555.complete Sequence
1972 bp assembled on 2011-08-04
> BO28555.complete
GAAGTTATCAGTCGACATGTTCTCGAAGAAGAAAAAGAAACCGCTGATCT
CGATGCCCAGCAATTTTGAGCATCGTGTGCACACAGGCTTCGACAAGCGG
GAGAACAAATATGTTGGCCTGCCCCTCCAATGGGCGTCCATTGTGGGCAA
CAATCAGATACTCAAGTCCTCCAACCGCCCGCTGCCACTGGTCGATCCCT
CGGAGATTACGCCCACCGAGATTCTCGATCTGAAGACTATTGTGCGTCCG
CATCACAACAACAACAAGGCGGACACCACCTCGCTCAACAGCAGCAGCAC
AATGATGATGGGCTCAATGGCGCCGATGAATCCCATGGCACCTGGCGCAC
ACCCAATGATGAGCCATGGCCCCGGAATGATGATGCCACCCGAGACGGGC
GGCATAGTCCTGCCGAAGACCTCTCACGTGGCCAGATCCAATTCGCTGCG
GAGTTCCAGTCCGCCGCGAGTGCGACGGGTAGCCAATGTGCCGCCATCGG
TGCCGGAGGAGGAGGGACCACCGGCAGCTGGAACACCGGGAGTAGGTGGA
GCTAGTAGCGGTGGCTTTAAGCCACCCGGTGCCCATCCCTCCCTGCTCTA
TAACAGTCAGCATGCGCACGCGAATGGAGCAACAGGACCACTGGCCGTGC
GCACGGATCAAACCAACCTGCAGCAGTATCGCAGCAATCTGGCCCCGCCA
TCCGGCGGCTCCATGCCCCAGCAACAGCAGACTTCGCCCGTGGGTTCGGT
GGCCAGTGGCACGCGATCCAATCACTCGCACACGAACAATGGCAACAGCG
GCGGCAGCTATCCTCCCATGTATCCCACAAGCCATCAGCAGCAGCAGCAG
CAGCAACAGCAGGCCAAACAGGGTGGCGATCAGAACCAAAATCCTCTGCA
TCCGCATGCTCATCCGCATCCGCACCATCACCAACATTTGGCCAAGTCGG
CGTCCAGGGCATCCAGTTCCAGCGGGGGAGCGAGCAGTGCTGCCCAGCAG
GCGAGCGGCGCCAGTGGAGGAGCGGCGGGTCAGCCAAAGCAGGACCAACG
ACTCACCCACGAACAGTTCCGTGCCGCCCTTCAGATGGTGGTCTCCGCCG
GTGATCCACGCGAGAACCTCGACCACTTTAACAAAATAGGCGAGGGCTCC
ACGGGCACCGTATGCATTGCCACGGACAAATCCACAGGTCGCCAGGTGGC
CGTGAAGAAGATGGATCTGCGCAAACAGCAGCGACGGGAGCTGCTATTCA
ACGAGGTCGTCATCATGCGGGACTACCATCATCCCAATATCGTGGAGACA
TACTCCAGCTTTCTGGTCAACGATGAGCTTTGGGTGGTGATGGAGTACCT
CGAGGGCGGCGCCCTCACCGATATTGTCACCCATTCGCGCATGGACGAGG
AGCAGATAGCCACCGTCTGCAAGCAATGCTTGAAGGCTTTGGCCTATTTG
CACTCACAGGGCGTCATTCATCGCGACATCAAGTCGGACTCGATTCTGCT
GGCCGCCGATGGTCGCGTGAAGCTATCGGACTTTGGATTCTGCGCCCAGG
TGTCACAGGAGCTGCCGAAGCGCAAGAGTCTGGTTGGCACGCCGTATTGG
ATGTCGCCGGAGGTCATATCGCGCCTGCCGTACGGCCCGGAAGTGGATAT
CTGGTCGCTGGGCATCATGGTCATCGAGATGGTGGACGGCGAGCCGCCGT
TCTTCAACGAACCGCCGCTGCAGGCGATGCGTCGCATCCGTGACATGCAG
CCGCCGAACCTGAAGAACGCGCACAAGGTCTCGCCGCGCCTGCAGTCCTT
CCTCGACCGGATGCTGGTGCGGGATCCGGCGCAGCGTGCCACCGCCGCCG
AGCTGCTGGCCCATCCCTTCCTGCGCCAGGCAGGACCGCCGTCGCTGCTG
GTTCCGCTGATGCGCAATGCGCGACACCATCCGGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGAAAGGGG
BO28555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbt-RA | 1920 | CG18582-PA | 1..1917 | 17..1933 | 9570 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbt-RA | 3269 | CG18582-RA | 508..2424 | 17..1933 | 9570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16611192..16612363 | 17..1188 | 5845 | 99.9 | Plus |
| X | 23542271 | X | 16613534..16614011 | 1456..1933 | 2390 | 100 | Plus |
| X | 23542271 | X | 16612430..16612706 | 1184..1460 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:57:47 has no hits.
BO28555.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:57 Download gff for
BO28555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbt-RA | 494..2410 | 22..1941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:08 Download gff for
BO28555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbt-RA | 513..2429 | 22..1941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:49 Download gff for
BO28555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mbt-RA | 513..2429 | 22..1941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:49 Download gff for
BO28555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16611197..16612362 | 22..1187 | 99 | -> | Plus |
| X | 16612434..16612705 | 1188..1459 | 100 | -> | Plus |
| X | 16613538..16614016 | 1460..1941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:08 Download gff for
BO28555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16505230..16506395 | 22..1187 | 99 | -> | Plus |
| arm_X | 16506467..16506738 | 1188..1459 | 100 | -> | Plus |
| arm_X | 16507571..16508049 | 1460..1941 | 99 | | Plus |
BO28555.pep Sequence
Translation from 16 to 1972
> BO28555.pep
MFSKKKKKPLISMPSNFEHRVHTGFDKRENKYVGLPLQWASIVGNNQILK
SSNRPLPLVDPSEITPTEILDLKTIVRPHHNNNKADTTSLNSSSTMMMGS
MAPMNPMAPGAHPMMSHGPGMMMPPETGGIVLPKTSHVARSNSLRSSSPP
RVRRVANVPPSVPEEEGPPAAGTPGVGGASSGGFKPPGAHPSLLYNSQHA
HANGATGPLAVRTDQTNLQQYRSNLAPPSGGSMPQQQQTSPVGSVASGTR
SNHSHTNNGNSGGSYPPMYPTSHQQQQQQQQQAKQGGDQNQNPLHPHAHP
HPHHHQHLAKSASRASSSSGGASSAAQQASGASGGAAGQPKQDQRLTHEQ
FRAALQMVVSAGDPRENLDHFNKIGEGSTGTVCIATDKSTGRQVAVKKMD
LRKQQRRELLFNEVVIMRDYHHPNIVETYSSFLVNDELWVVMEYLEGGAL
TDIVTHSRMDEEQIATVCKQCLKALAYLHSQGVIHRDIKSDSILLAADGR
VKLSDFGFCAQVSQELPKRKSLVGTPYWMSPEVISRLPYGPEVDIWSLGI
MVIEMVDGEPPFFNEPPLQAMRRIRDMQPPNLKNAHKVSPRLQSFLDRML
VRDPAQRATAAELLAHPFLRQAGPPSLLVPLMRNARHHPASFLDHSFGAR
KG
BO28555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mbt-PA | 639 | CG18582-PA | 1..639 | 1..639 | 3369 | 100 | Plus |
| Pak-PJ | 704 | CG10295-PJ | 75..698 | 3..636 | 939 | 36.4 | Plus |
| Pak-PE | 704 | CG10295-PE | 75..698 | 3..636 | 939 | 36.4 | Plus |
| Pak-PB | 704 | CG10295-PB | 75..698 | 3..636 | 939 | 36.4 | Plus |
| Pak-PA | 704 | CG10295-PA | 75..698 | 3..636 | 939 | 36.4 | Plus |
