BO28556.complete Sequence
3940 bp assembled on 2011-08-04
GenBank Submission: KX796396
> BO28556.complete
GAAGTTATCAGTCGACATGGTCAAGAAGGAGGAATCACGGCTGCCACAAG
CTGGTGACTTTCAGCTTAAGGAAGGATCAGTCGTGGATGCGACCCGAAAG
TACAGTTACTTTGATCTGTTCAGATACTCAACCAGATGCGAGCGCTTCCT
GTTGGTAGTCAGTCTGCTGGTGGCCACCGCTGCGTCCGCATTTATTCCCT
ACTTCATGATTATCTACGGAGAGTTCACATCCCTGCTCGTGGACCGAACA
GTCGGCGTGGGCACATCCTCGCCAGCCTTTGCTCTGCCCATGTTTGGTGG
CGGTCAGCAATTGACAAATGCCAGCAAAGAGGAGAACAACCAGGCGATCA
TTGATGATGCGACTGCCTTTGGCATTGGCAGTCTGGTGGGATCTGTGGCC
ATGTTCCTGCTCATCACACTGGCCATCGACTTGGCCAACCGGATAGCCCT
CAACCAAATCGATCGCATCCGAAAGCTCTTCCTGGAGGCAATGCTGCGAC
AGGACATCGCCTGGTACGACACCAGTTCGGGCTCCAACTTCGCCAGCAAA
ATGACAGAAGACCTGGACAAACTGAAGGAAGGCATTGGCGAGAAAATAGT
GATTGTGGTATTCCTGATCATGACCTTTGTGATTGGAATAGTGTCTGCTT
TCGTCTACGGATGGAAGCTCACCCTGGTCGTTCTAAGTTGTGTGCCCTTC
ATCATTGCAGCCACCAGTGTGGTGGCTCGACTCCAGGGATCGCTGGCCGA
GAAGGAGCTGAAGTCCTACTCCGATGCAGCCAACGTGGTCGAGGAGGTAT
TCAGTGGAATTCGCACAGTGTTCGCATTCAGTGGTCAGGAGAAGGAGAAG
GAACGCTTTGGCAAGCTGCTCATTCCCGCAGAGAATACGGGTCGCAAGAA
GGGTCTATACTCGGGCATGGGGAACGCTCTGTCCTGGCTGATCATCTACC
TGTGCATGGCCCTTGCCATCTGGTATGGTGTGACGCTCATTCTGGACGAG
CGTGATCTTCCCGATCGCGTTTATACTCCGGCCGTTCTGGTCATTGTCCT
GTTCGCCGTGATCATGGGTGCCCAGAATCTCGGTTTTGCCTCTCCACACG
TGGAAGCCATTGCTGTGGCCACGGCAGCTGGCCAGACCCTGTTCAACATC
ATCGATCGTCCGTCGCAGGTGGATCCAATGGACGAGAAGGGAAACAGGCC
GGAGAATACCGCTGGACACATTCGTTTCGAGGGCATACGCTTCCGTTACC
CCGCCCGTCCGGATGTGGAGATCCTCAAGGGTCTGACCGTCGATGTGCTT
CCGGGTCAGACGGTGGCCTTCGTGGGCGCATCTGGGTGTGGCAAGAGCAC
CCTCATCCAACTGATGCAGCGGTTCTACGACCCCGAAGCGGGCAGTGTCA
AACTGGATGGACGGGATCTTCGAACACTGAATGTGGGCTGGTTGCGTTCG
CAGATCGGAGTGGTGGGCCAGGAACCGGTTCTCTTCGCCACCACCATTGG
CGAGAATATCCGATACGGAAGACCATCGGCCACTCAGGCGGATATAGAGA
AGGCGGCGCGAGCGGCCAACTGTCATGATTTCATCACTCGCCTACCCAAG
GGCTACGACACCCAGGTGGGCGAGAAGGGCGCTCAGATTTCTGGTGGCCA
GAAGCAGCGGATTGCCATTGCCCGGGCTTTGGTTCGACAGCCCCAAGTGC
TTCTTCTCGACGAGGCCACCTCTGCCCTGGATCCCACCTCTGAGAAGCGG
GTGCAAAGTGCCCTAGAACTGGCCAGCCAGGGACCAACCACTCTAGTTGT
GGCCCACCGACTGTCCACCATCACCAATGCCGACAAGATTGTCTTCCTCA
AGGACGGTGTAGTGGCGGAGCAGGGTACGCACGAGGAGCTCATGGAGCGA
CGTGGTCTCTACTGCGAACTGGTGAGCATCACCCAGCGGAAGGAGGCCAC
GGAGGCGGACGAGGGAGCGGTTGCCGGGCGACCTCTGCAGAAGTCGCAGA
ACCTGTCTGACGAGGAAACCGATGATGACGAGGAGGATGAAGAGGAGGAC
GAAGAGCCGGAGCTGCAGACTTCGGGCAGCTCCAGGGACAGCGGATTCAG
AGCCAGCACGCGACGCAAGCGTCGCTCGCAGCGTCGCAAGAAGAAGAAGG
ACAAGGAAGTGGTATCCAAGGTGTCCTTCACTCAACTAATGAAGCTTAAT
TCTCCGGAGTGGCGTTTCATTGTCGTCGGAGGCATTGCATCCGTAATGCA
TGGCGCCACATTCCCGCTTTGGGGTCTCTTCTTTGGCGACTTCTTTGGAA
TCCTCTCGGACGGTGACGATGACGTTGTGCGAGCCGAGGTCCTAAAAATC
TCCATGATCTTTGTGGGCATTGGCCTGATGGCCGGATTGGGTAACATGCT
CCAGACCTACATGTTCACAACGGCCGGCGTGAAGATGACAACGCGATTGC
GTAAACGGGCTTTTGGAACGATTATTGGTCAGGATATTGCCTACTTCGAT
GACGAGCGGAATTCAGTGGGAGCACTGTGCTCCCGGCTGGCCAGCGATTG
TTCCAACGTTCAGGGTGCAACCGGAGCTCGTGTGGGCACAATGCTCCAGG
CCGTGGCCACTCTTGTGGTCGGAATGGTCGTCGGTTTCGTTTTCTCCTGG
CAACAGACGCTCCTCACACTGGTCACCCTGCCACTGGTCTGTTTGTCCGT
CTACTTGGAGGGTCGTTTTATCATGAAGAGCGCCCAAAAGGCTAAGGCGT
CGATCGAGGAGGCTTCTCAAGTGGCAGTCGAAGCTATTACCAATATCCGA
ACGGTCAATGGTCTTTGCCTAGAGCGCCAGGTCTTGGATCAGTACGTTCA
GCAGATCGATCGCGTGGATATCGCCTGCAGGCGCAAGGTTCGCTTCCGTG
GTCTGGTTTTCGCTCTGGGACAGGCGGCTCCTTTCCTGGCTTACGGCATC
TCAATGTACTATGGTGGTATTCTGGTGGCAGAGGAGCGAATGAACTATGA
GGACATCATCAAGGTGGCCGAGGCTCTGATCTTTGGCTCCTGGATGTTGG
GACAGGCCCTGGCCTACGCGCCAAATGTAAACGATGCTATTCTGTCCGCC
GGACGCCTAATGGATCTCTTCAAGCGCACCTCCACGCAGCCCAATCCGCC
ACAGAGTCCCTACAATACAGTTGAGAAATCCGAGGGAGACATTGTCTATG
AAAACGTGGGCTTCGAATATCCCACCAGGAAGGGCACTCCCATTCTGCAG
GGCCTAAATCTCACCATCAAGAAATCGACGACGGTAGCTCTGGTGGGTCC
ATCTGGTTCCGGCAAGTCCACCTGCGTGCAACTGCTGCTTCGCTACTACG
ATCCCGTATCGGGATCCGTGAATCTGAGCGGAGTGCCGAGCACGGAATTC
CCGTTGGACACACTGCGCTCCAAGCTGGGCCTGGTCTCGCAGGAACCCGT
GCTCTTCGATCGCACCATTGCCGAGAACATAGCTTATGGCAACAATTTCC
GTGACGATGTGTCCATGCAGGAGATTATTGAGGCGGCCAAGAAGTCGAAT
ATCCACAACTTTATAAGTGCTTTGCCCCAAGGCTACGACACCCGACTGGG
CAAGACCTCGCAGCTCTCTGGAGGTCAGAAGCAGCGCATCGCCATCGCTC
GAGCCCTGGTCAGAAACCCGAAGATACTCATCCTGGACGAGGCAACCTCT
GCGCTGGACTTGGAGAGCGAGAAGGTGGTGCAACAGGCGCTGGATGAGGC
GAGATCAGGCCGCACATGCCTGACGATTGCGCATCGTCTGACCACCGTGC
GGAATGCGGATCTCATCTGTGTGCTAAAACGCGGCGTGGTAGTGGAGCAC
GGCACCCACGATGAGTTGATGGCACTGAACAAAATCTACGCCAATCTCTA
TCTGATGCAGCAGGTGTCGGGCGCAAGCTTTCTAGACCAT
BO28556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mdr49-RA | 3909 | CG3879-PA | 1..3906 | 17..3922 | 19155 | 99.4 | Plus |
| Mdr49-RB | 3306 | CG3879-PB | 1..3303 | 620..3922 | 16140 | 99.2 | Plus |
| Mdr65-RA | 3909 | CG10181-PA | 1627..1724 | 3611..3708 | 235 | 82.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mdr49-RA | 4240 | CG3879-RA | 231..4136 | 17..3922 | 19155 | 99.4 | Plus |
| Mdr49-RB | 3624 | CG3879-RB | 157..3520 | 559..3922 | 16445 | 99.3 | Plus |
| Mdr65-RA | 4135 | CG10181-RA | 1762..1859 | 3611..3708 | 235 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12942575..12944138 | 2122..559 | 7730 | 99.6 | Minus |
| 2R | 25286936 | 2R | 12940427..12941175 | 3922..3174 | 3670 | 99.3 | Minus |
| 2R | 25286936 | 2R | 12941244..12941852 | 3175..2567 | 2910 | 98.5 | Minus |
| 2R | 25286936 | 2R | 12941955..12942401 | 2567..2121 | 2160 | 98.9 | Minus |
| 2R | 25286936 | 2R | 12944522..12944767 | 558..313 | 1230 | 100 | Minus |
| 2R | 25286936 | 2R | 12944826..12945021 | 313..118 | 980 | 100 | Minus |
| 2R | 25286936 | 2R | 12945086..12945187 | 118..17 | 510 | 100 | Minus |
| 3L | 28110227 | 3L | 6243010..6243107 | 3708..3611 | 235 | 82.7 | Minus |
| 3L | 28110227 | 3L | 6236952..6237064 | 1732..1620 | 205 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:58:22 has no hits.
BO28556.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:57 Download gff for
BO28556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr49-RA | 229..4134 | 17..3924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:31 Download gff for
BO28556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr49-RA | 231..4136 | 17..3924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:06 Download gff for
BO28556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdr49-RA | 231..4136 | 17..3924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:06 Download gff for
BO28556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12940425..12941173 | 3176..3924 | 99 | <- | Minus |
| 2R | 12941244..12941852 | 2567..3175 | 98 | <- | Minus |
| 2R | 12941956..12942401 | 2121..2566 | 98 | <- | Minus |
| 2R | 12942577..12944138 | 559..2120 | 99 | <- | Minus |
| 2R | 12944522..12944767 | 313..558 | 100 | <- | Minus |
| 2R | 12944827..12945020 | 119..312 | 100 | <- | Minus |
| 2R | 12945086..12945187 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:31 Download gff for
BO28556.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8827930..8828678 | 3176..3924 | 99 | <- | Minus |
| arm_2R | 8828749..8829357 | 2567..3175 | 98 | <- | Minus |
| arm_2R | 8829461..8829906 | 2121..2566 | 98 | <- | Minus |
| arm_2R | 8830082..8831643 | 559..2120 | 99 | <- | Minus |
| arm_2R | 8832027..8832272 | 313..558 | 100 | <- | Minus |
| arm_2R | 8832332..8832525 | 119..312 | 100 | <- | Minus |
| arm_2R | 8832591..8832692 | 17..118 | 100 | | Minus |
BO28556.pep Sequence
Translation from 16 to 3940
> BO28556.pep
MVKKEESRLPQAGDFQLKEGSVVDATRKYSYFDLFRYSTRCERFLLVVSL
LVATAASAFIPYFMIIYGEFTSLLVDRTVGVGTSSPAFALPMFGGGQQLT
NASKEENNQAIIDDATAFGIGSLVGSVAMFLLITLAIDLANRIALNQIDR
IRKLFLEAMLRQDIAWYDTSSGSNFASKMTEDLDKLKEGIGEKIVIVVFL
IMTFVIGIVSAFVYGWKLTLVVLSCVPFIIAATSVVARLQGSLAEKELKS
YSDAANVVEEVFSGIRTVFAFSGQEKEKERFGKLLIPAENTGRKKGLYSG
MGNALSWLIIYLCMALAIWYGVTLILDERDLPDRVYTPAVLVIVLFAVIM
GAQNLGFASPHVEAIAVATAAGQTLFNIIDRPSQVDPMDEKGNRPENTAG
HIRFEGIRFRYPARPDVEILKGLTVDVLPGQTVAFVGASGCGKSTLIQLM
QRFYDPEAGSVKLDGRDLRTLNVGWLRSQIGVVGQEPVLFATTIGENIRY
GRPSATQADIEKAARAANCHDFITRLPKGYDTQVGEKGAQISGGQKQRIA
IARALVRQPQVLLLDEATSALDPTSEKRVQSALELASQGPTTLVVAHRLS
TITNADKIVFLKDGVVAEQGTHEELMERRGLYCELVSITQRKEATEADEG
AVAGRPLQKSQNLSDEETDDDEEDEEEDEEPELQTSGSSRDSGFRASTRR
KRRSQRRKKKKDKEVVSKVSFTQLMKLNSPEWRFIVVGGIASVMHGATFP
LWGLFFGDFFGILSDGDDDVVRAEVLKISMIFVGIGLMAGLGNMLQTYMF
TTAGVKMTTRLRKRAFGTIIGQDIAYFDDERNSVGALCSRLASDCSNVQG
ATGARVGTMLQAVATLVVGMVVGFVFSWQQTLLTLVTLPLVCLSVYLEGR
FIMKSAQKAKASIEEASQVAVEAITNIRTVNGLCLERQVLDQYVQQIDRV
DIACRRKVRFRGLVFALGQAAPFLAYGISMYYGGILVAEERMNYEDIIKV
AEALIFGSWMLGQALAYAPNVNDAILSAGRLMDLFKRTSTQPNPPQSPYN
TVEKSEGDIVYENVGFEYPTRKGTPILQGLNLTIKKSTTVALVGPSGSGK
STCVQLLLRYYDPVSGSVNLSGVPSTEFPLDTLRSKLGLVSQEPVLFDRT
IAENIAYGNNFRDDVSMQEIIEAAKKSNIHNFISALPQGYDTRLGKTSQL
SGGQKQRIAIARALVRNPKILILDEATSALDLESEKVVQQALDEARSGRT
CLTIAHRLTTVRNADLICVLKRGVVVEHGTHDELMALNKIYANLYLMQQV
SGASFLDH
BO28556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mdr49-PA | 1302 | CG3879-PA | 1..1302 | 1..1302 | 6540 | 100 | Plus |
| Mdr49-PB | 1101 | CG3879-PB | 1..1101 | 202..1302 | 5547 | 100 | Plus |
| Mdr65-PA | 1302 | CG10181-PA | 25..1300 | 23..1299 | 2878 | 45.1 | Plus |
| CG10226-PA | 1320 | CG10226-PA | 23..1316 | 16..1298 | 2678 | 43 | Plus |
| Mdr50-PA | 1313 | CG8523-PA | 45..1312 | 4..1303 | 2570 | 42.2 | Plus |
| Mdr49-PA | 1302 | CG3879-PA | 24..648 | 714..1307 | 816 | 33.4 | Plus |
| Mdr49-PB | 1101 | CG3879-PB | 513..1098 | 24..640 | 814 | 33.5 | Plus |
| Mdr49-PB | 1101 | CG3879-PB | 2..447 | 865..1307 | 758 | 40 | Plus |
