BO28557.complete Sequence
2449 bp assembled on 2011-08-05
GenBank Submission: KX798795
> BO28557.complete
GAAGTTATCAGTCGACATGCACAAAATGGTTAAATTATTCCTCAGAGAAG
TTCTGAATGCATGGCGAGCAAAGGCCAGATGCAATGTGGTGCCCGACGAA
CGGACACAGGAACTCTTCCACGAGCTAAGCTTCCATCCTAGCCAAAAGCA
GATTAGCGAAATGCTGCAGACTGCCAAGAAAGTGGCCCGCAAGGGAGGAA
GTGGACAGGCAAATGGGCTGACTTTTGGCCAGTTTTGTGTCTTAGCCGCG
GATCTGAAACGTTTCAGAGCTTCAACAATTTCGAATCAGCCATCGTACTG
CGACTATCAGTCTCTGTCCGCGGGACTGCTGCTCCCGGAACTAGATGATC
CTGCCAGCTCGTCCAATCAAAACCTTCAGTCGCCAGCGGCCACCAACTCG
TCACCTGCGCACAGCTCCAAGAAGCCGGATAACCACGGTACCGAACTGAG
GAGTACCAAGTCCTTTAGCAGTGTGGACGATACCAAAAAGAAAAAGAACG
CCACCAATGAGCCCGTCGAGGTTTTCCTTGGCGGATCCTGCAATCCGACA
ACCTGGCGAGCCGACGTTGCCATACCAGCCCTCAAGGAGCTGGGCATTTC
GTTTTACAATCCTCAAGTATCCGATTGGACGCCCGATCTCATCGAGCTCG
AGCATCGAGCTAAGGAAAAGGCCCGTGTATTATTCTTCGTTATGGATTCG
GAAACACGCGCATCTGCTGGTGCCATCGAGGCGGCACACATAGCGGGTCA
AAACTGCAAGCAGCTGGTGTTGGTTTTGCATCCGTATAAACCAAATCAGA
AGATCCTCAATGAGCCTATTTCGCAGCAAGAATACCTCGATCTGAATCGC
AATCAGTTGATACTTAAGGAGCTGGTCTCCCGACGCGGTCTGCCCGTATT
GGATAACATACCACTGGGTCTGCAGCGCACTAAGGATATCCTGGGTGGCA
TCAGGGATCCACCGTCCAAAATATCTTCTATTTTAGATACCGTTCGCGGC
GCCTTTGATCGTGTTAATCCGCTAAACGATCTGCTCACTGTGGAACAATG
CAAACGTGCTCTCTTATTCCTAGGCTATGCTCAGAGTTTAGTTAATTTAG
ACAATCTAAATAAGATCATTATCAACCAACGCGAATCGCTGAAATTGCTC
CAAACGCACAGTCCAAGAGCTGTCGCCGATGATGCGGATGCCGATGGCGG
CAACTGCAGCCAGCCCATCCTCCCCAGCCAGGAGCTCATCGACTTTGATC
TGTTTTGTGTGATCTCGGCGTATCTGTCCGTCCTGCAGCAGGAGATCCAT
GAGAGCGGATGCATTTCGCCCATCAAGGGCACCAATGTGCCGCCACCGCA
AGTTTACTTCACCAACGCTCCCGATGTGGACATTTACTACTCGGCCAGCA
AGAATATTTCGCGCACGTCGAGCAACGCCAGTGTTCCGTCCAATAGTAGC
AGTGGCATCGGACACGACCTGGAGCGCCAGAGTCTCTTCGAGCAGCTCAG
TCGCAGCCGGGACAGTGGAACATCTTCGCCACAGCCCACGGGATCGAGCA
GTTTGGGTAAAAGCCCTCGGCCACAGATCCTGCTAAATGTGGAGTCGATC
GAGACAACGGAAATAATCACCACTAAAACCATAGAGACCAAGCCAAATCC
GGTGACTGCATCAACTGTTGTGCATGCCGAGGAGGAAGAGAGTGATTCCA
ACGACTCGGTCCTCTCCAGCAACAGCTCCATAGCCAGTGCCGGCGATATA
CTCTGCTGCGGTGGTGGCTTGGATCTGCGGGATGTCTATCTGGGCGGAAG
TTGTGTGCTGCGCACCAAGTGGCGTCAGGAACTGGCCGTGCCCTATCTGC
AGTCCAAGGGCGTCAGTTTCCATACACCGGCGCTGCACGAGAGCATCCAG
CAAATGATTCTGAACCAGGAACAGAACCAGGATCAGTCTCAGCAGCCGAC
AGTGCCGCCGCAGGAACAGCAGCAACAGCAGCGTTCCTTTGTGCGCACTC
GGCGAAAGTGCAGGGGCAACCAGCTGCAGCTGGAGGAGCAAGAGGAGCTG
ACCGTGGCCGAGGAGTCACTTAGCTGGTCCCTACCACCGGTCGCCGTTCG
TCAGAGCCTGTTCAACCCATCGCTGCTCGACTCGAGTCGAGTGTTGCTCT
TCGTCATCACCAACGAGACCCGTTCGCTGGCGCCCATGACCCTGGCCGCC
CACTGCATTGGCCTCATGTACAATGTGGTGCTGGCGGTGCAAATGCTGCC
CGAAGACTGTGTCCTGGGTGACGAGAAGCTGACTGTGGCGGCCATCAAGG
ACTACAATCGCGGACGGTCGTACCTGATCGACTTGGCCAAGAGGCAGGGT
GTGCCCGTGTTCAGCGACATTCGGGCAGCCCTCGAGTGCACCGTGGCCAA
GGTGAAGGCGTACAACAACCGCGACCGCTGCGCAAGCTTTCTAGACCAT
BO28557.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| raw-RB | 2418 | CG12437-PB | 1..2415 | 17..2431 | 12075 | 100 | Plus |
| raw-RC | 2970 | CG12437-PC | 581..2967 | 45..2431 | 11935 | 100 | Plus |
| raw-RE | 2970 | CG12437-PE | 581..2967 | 45..2431 | 11935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| raw-RB | 3220 | CG12437-RB | 248..2662 | 17..2431 | 12075 | 100 | Plus |
| raw-RC | 3954 | CG12437-RC | 1010..3396 | 45..2431 | 11935 | 100 | Plus |
| raw-RE | 4275 | CG12437-RE | 1331..3717 | 45..2431 | 11935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8710727..8711638 | 2278..1367 | 4560 | 100 | Minus |
| 2L | 23513712 | 2L | 8711701..8712080 | 1367..988 | 1900 | 100 | Minus |
| 2L | 23513712 | 2L | 8712674..8713022 | 613..265 | 1745 | 100 | Minus |
| 2L | 23513712 | 2L | 8712388..8712602 | 828..614 | 1075 | 100 | Minus |
| 2L | 23513712 | 2L | 8712145..8712303 | 987..829 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 8710438..8710592 | 2431..2277 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 8713089..8713203 | 267..153 | 575 | 100 | Minus |
| 2L | 23513712 | 2L | 8713264..8713373 | 152..43 | 550 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1046..1130 | 1901..1982 | 174 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1142 | 1897..1982 | 153 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1461..1584 | 1862..1982 | 152 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2375 | 1916..1984 | 138 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6923 | 1887..1982 | 134 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6794 | 1901..1982 | 131 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6848 | 1910..1982 | 131 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2394 | 1914..1982 | 129 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6815 | 1914..1982 | 129 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6893 | 1898..1982 | 119 | 63.2 | Plus |
BO28557.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 11:54:58 Download gff for
BO28557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| raw-RB | 248..2662 | 17..2433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:20 Download gff for
BO28557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| raw-RB | 248..2662 | 17..2433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:04 Download gff for
BO28557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| raw-RB | 248..2662 | 17..2433 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:04 Download gff for
BO28557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8713264..8713370 | 46..152 | 100 | <- | Minus |
| 2L | 8740385..8740413 | 17..45 | 100 | | Minus |
| 2L | 8710436..8710590 | 2279..2433 | 98 | <- | Minus |
| 2L | 8710727..8711637 | 1368..2278 | 100 | <- | Minus |
| 2L | 8711701..8712080 | 988..1367 | 100 | <- | Minus |
| 2L | 8712145..8712303 | 829..987 | 100 | <- | Minus |
| 2L | 8712388..8712602 | 614..828 | 100 | <- | Minus |
| 2L | 8712674..8713019 | 268..613 | 100 | <- | Minus |
| 2L | 8713089..8713203 | 153..267 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:20 Download gff for
BO28557.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8710436..8710590 | 2279..2433 | 98 | <- | Minus |
| arm_2L | 8710727..8711637 | 1368..2278 | 100 | <- | Minus |
| arm_2L | 8712388..8712602 | 614..828 | 100 | <- | Minus |
| arm_2L | 8711701..8712080 | 988..1367 | 100 | <- | Minus |
| arm_2L | 8712145..8712303 | 829..987 | 100 | <- | Minus |
| arm_2L | 8712674..8713019 | 268..613 | 100 | <- | Minus |
| arm_2L | 8713089..8713203 | 153..267 | 100 | <- | Minus |
| arm_2L | 8713264..8713370 | 46..152 | 100 | <- | Minus |
| arm_2L | 8740385..8740413 | 17..45 | 100 | | Minus |
BO28557.pep Sequence
Translation from 16 to 2449
> BO28557.pep
MHKMVKLFLREVLNAWRAKARCNVVPDERTQELFHELSFHPSQKQISEML
QTAKKVARKGGSGQANGLTFGQFCVLAADLKRFRASTISNQPSYCDYQSL
SAGLLLPELDDPASSSNQNLQSPAATNSSPAHSSKKPDNHGTELRSTKSF
SSVDDTKKKKNATNEPVEVFLGGSCNPTTWRADVAIPALKELGISFYNPQ
VSDWTPDLIELEHRAKEKARVLFFVMDSETRASAGAIEAAHIAGQNCKQL
VLVLHPYKPNQKILNEPISQQEYLDLNRNQLILKELVSRRGLPVLDNIPL
GLQRTKDILGGIRDPPSKISSILDTVRGAFDRVNPLNDLLTVEQCKRALL
FLGYAQSLVNLDNLNKIIINQRESLKLLQTHSPRAVADDADADGGNCSQP
ILPSQELIDFDLFCVISAYLSVLQQEIHESGCISPIKGTNVPPPQVYFTN
APDVDIYYSASKNISRTSSNASVPSNSSSGIGHDLERQSLFEQLSRSRDS
GTSSPQPTGSSSLGKSPRPQILLNVESIETTEIITTKTIETKPNPVTAST
VVHAEEEESDSNDSVLSSNSSIASAGDILCCGGGLDLRDVYLGGSCVLRT
KWRQELAVPYLQSKGVSFHTPALHESIQQMILNQEQNQDQSQQPTVPPQE
QQQQQRSFVRTRRKCRGNQLQLEEQEELTVAEESLSWSLPPVAVRQSLFN
PSLLDSSRVLLFVITNETRSLAPMTLAAHCIGLMYNVVLAVQMLPEDCVL
GDEKLTVAAIKDYNRGRSYLIDLAKRQGVPVFSDIRAALECTVAKVKAYN
NRDRCASFLDH
BO28557.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| raw-PB | 805 | CG12437-PB | 1..805 | 1..805 | 4115 | 100 | Plus |
| raw-PC | 989 | CG12437-PC | 187..989 | 3..805 | 4073 | 99.1 | Plus |
| raw-PE | 989 | CG12437-PE | 187..989 | 3..805 | 4073 | 99.1 | Plus |
| raw-PA | 989 | CG12437-PA | 187..989 | 3..805 | 4073 | 99.1 | Plus |
| raw-PD | 832 | CG12437-PD | 36..832 | 9..805 | 4065 | 99.7 | Plus |
