BO28558.complete Sequence
2866 bp assembled on 2011-08-05
GenBank Submission: KX794462
> BO28558.complete
GAAGTTATCAGTCGACATGTTGGATGATTACTACACCTGGACTTACCCGG
ATATACCCGAAAATGTGGCACAGGAGCTGCTGCAGCTGAACGGTTCGCTG
GTAGTGGTCGGAATCGTTGGCCGGTCGGATTGCGACCAGGCCAACAAGAT
GGTGGCTTTCGGCATGGAGCCGCCTAGTGAGCACACACCCAAGGACGGCC
AGATGCAGTGTTACTACAAGCCGGGTACCTCCATCCTGCTGCTGCACTTC
GAAAGCACCTACGACGCGGAGATTGCTGGCCAGATGATAGATGTCTGCAT
AGAGGATGTGGATACTCCCTTCGACATCGACAGCTTCTTCGAGGGGATAC
GATGTCGCTTCGTGCGCATGATGCTGCTGGCCCTGCACGTTTGCCACATT
GTGGTGTATGTGGAAACTGGGCAGACGTTTGATCCGACACTAATCACCGT
GTTCCAATTGGCCAAGTTCGCCAGGGAACAGCATTTGATGCAGTTCTTGC
CACAAATGCTTAGAGAAACGCCTGCCGCCAGAATGAGCGAGCGCACACGA
CTGTGCACTCCCAGGATTCTCTTCCTTTTCGAAAACTTTCCGAGCGACGA
GCCAAAGACACGCGAATGCGTCTCTACATACGAGTTCCAGATGGAGGACT
GCATCTATGAGTTGTTGCGCCACCACAACATCGTGACCAATAGCAGCAGC
AACTCGCTTGTGGCACTTCCCAATAACAAACAGTTCGTCTTCTTCAACGC
ACACGAAGAGTTGCGTGAGGACACGCTGATGAAGGCCGTCGAATGCCTCA
ATGAGACAATGTACAAGCCGGATCTCAAAGAGGAGGAGGAAGACCTAGAG
ATCTTGGCGCTGGCTCCCTTCGATGGCTTCGTCAAACCCTTCGCCTTGCC
GGTCGATGAGAAGGAGTGGGATAATCAGCAGTACAAGAAGGACCACACCG
TGTGGAACTTTCTGGAGCGACACGTTCAGGACGCCTTGATGGGTTGCTTT
GAAGCGGGTTCCTTCAAGCAGCATGCCCAGCAGGGTACGTTCCAACTCCT
AAATAGCAAGGAGTGGCACGACTGCATGGCCACGATGCACACGTTGCTGG
TGGAGAACACTAAGGATCCAAACCTAGAAACCAGCAATGAGGAATATAAA
AACTTCTTGAAGAACTTCGACGAGAGCTTGAACTATGAGAAAAAATTTTG
GGCTCACCTCTGCGAACTGGGCCTAAAGAAGGGCATCGCCGCCTACAAGA
ACGCTGCACCCGAGAACTATGGCAGTGCCACGCACCGACAACTACTGGCG
GAGGCCACCCTTGCCTTCGAGGAGGAAGGTCGCGGTCCACAGGCGCAGGC
GGCACTGGCGAAGCTGGCATCCATTTGCCACAAGCACTGGCAGGATGGAC
GTCAGCAGTGCGAGCAGCTTAGCCTGCGCTCTCATCCCTGCACACTGCCC
AAGAAAGTGCCACACGAGAAGCACAACAGCGGAGTGATCCACATCTCCAG
CTGCAATTGCGGTCGCACTCAGGGCCGTCGAGAGGATCCGTTCAACCTGC
GGCAAGCGAACTACGAGTTCTACGAGCACATTGCTCAAATGTGCAACTTG
TGCGTTAAGGTCAAGCAGTACCAGTTCCCCATTTTCGAGCCATCGGTTAG
TGATTACCGGGCGGCGGCCTTTGAAGCTGCATTTCCTCTGTTGAACAATG
GAAAAAGTGGTGCGCCGCAAGACGAAGATGCGGAGGAGGATGAAGCGGAG
GAAGAGGAGGGTCAGGAGCAAGAGCAACCCACGGAAGAGCAGCTTCAGAA
TACCGCCAGCAACTGCTGCTCCCAGCCCTTGTCGCCCACCTTTGGGTCCG
ATCTAAACATGTCCATTGCCGGATTTGGAGCATCACTGAAGGAATCGCAG
GCTAGTTCCGAGCAACTGTTGAATTCCGAGCAGAATACCACTAGCAGTGG
CACCTCCAGCGCCGACACGGATAACGAACTCGTGGTTGAGCTCCAGGAGC
CAGCGAAGAAGGAGGCTCGCGAAGACGCCGGTCCAGCCCATGCCGTTTCC
ACGTCCACAACTGAGTATCTGCCGGGCTTGGTCCACACTGTCAGCAACTT
TGGCCTGCTGCCGCTCTTCCCAAGTTGGTCCCTGGCCTGCGTGGGTCCCA
GTTCCATTTATAGCCACAATACCGGGCTGCAGGAGCACTTCCAGAGCGGC
TTCTTGTCCGGCGCCAATTTCCTGCTGCCCTGGGACGTCCAGTTGCGTCT
AGTTCACGCGCCCAAGCAGCAATACCAGCAGCAGCATCACGGAAAGAAGC
AGCAGCGGTGGAAGAAGCAGGGCGACAGGCTTTCGCTCAAAATATTCGTC
GGCATGGAGTACGAGTGCTCCCGCGGACACCGGTTCATGATGTGCGCCCC
AGATCGCGTGCTGCGCGGTGGAGCAGACATCGAACGCGAAACCTGCAGCA
TGGTAGTCCACAACAACATGCCGCTCTATTATCCCTGTCCCTGCCGATCC
CAGAACAACTTTCTGGCGCAGCTGATGCGCATCCATGTGGTGACGCCCAA
GGCGCCGGTCAACATCATCGTGGATCCCAAGGTGTGCGTGGGAAGGTACA
CCTTCACCATGGGCAGCATAGTACCGCCTCGCCTCTCACAGAGCGCCTAC
TGGATCATCCGATTGCCCTACGTCTACCAGGGTGACGATGTGCTCATCGC
TCCGCCCGAGCAACTGGATCCGGGCTATCCGCTGACCGGTGGCTATCTAC
TGCCTGGGATGTTCGGAGTGGTGGAGACGGATCCCACACTGGATTTGAAT
GAACCTGACAAGATGGGCGCTTCTGCAGCGGGAAATTTCACTAGGATTGC
AAGCTTTCTAGACCAT
BO28558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6729-RA | 2835 | CG6729-PA | 1..2832 | 17..2848 | 14070 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6729-RA | 2993 | CG6729-RA | 62..2893 | 17..2848 | 14070 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10740882..10742535 | 2848..1195 | 8240 | 99.9 | Minus |
| 2L | 23513712 | 2L | 10742693..10743770 | 1147..70 | 5330 | 99.6 | Minus |
| 2L | 23513712 | 2L | 10743822..10743874 | 69..17 | 265 | 100 | Minus |
| 2L | 23513712 | 2L | 10742588..10742634 | 1194..1148 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6819 | 2265..2319 | 131 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6764 | 2263..2306 | 130 | 77.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6861 | 2265..2327 | 128 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6785 | 2265..2306 | 120 | 76.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6891 | 2255..2319 | 118 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..6889 | 2265..2320 | 118 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6858..6913 | 2265..2320 | 118 | 67.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1105 | 2262..2320 | 117 | 68.3 | Plus |
BO28558.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 12:00:46 Download gff for
BO28558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6729-RA | 66..2892 | 22..2850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:35 Download gff for
BO28558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6729-RA | 67..2893 | 22..2850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:18 Download gff for
BO28558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6729-RA | 67..2893 | 22..2850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:18 Download gff for
BO28558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10740880..10742535 | 1195..2850 | 99 | <- | Minus |
| 2L | 10742588..10742634 | 1148..1194 | 100 | <- | Minus |
| 2L | 10742693..10743770 | 70..1147 | 99 | <- | Minus |
| 2L | 10743822..10743869 | 22..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:35 Download gff for
BO28558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10740880..10742535 | 1195..2850 | 99 | <- | Minus |
| arm_2L | 10742588..10742634 | 1148..1194 | 100 | <- | Minus |
| arm_2L | 10742693..10743770 | 70..1147 | 99 | <- | Minus |
| arm_2L | 10743822..10743869 | 22..69 | 100 | | Minus |
BO28558.pep Sequence
Translation from 16 to 2866
> BO28558.pep
MLDDYYTWTYPDIPENVAQELLQLNGSLVVVGIVGRSDCDQANKMVAFGM
EPPSEHTPKDGQMQCYYKPGTSILLLHFESTYDAEIAGQMIDVCIEDVDT
PFDIDSFFEGIRCRFVRMMLLALHVCHIVVYVETGQTFDPTLITVFQLAK
FAREQHLMQFLPQMLRETPAARMSERTRLCTPRILFLFENFPSDEPKTRE
CVSTYEFQMEDCIYELLRHHNIVTNSSSNSLVALPNNKQFVFFNAHEELR
EDTLMKAVECLNETMYKPDLKEEEEDLEILALAPFDGFVKPFALPVDEKE
WDNQQYKKDHTVWNFLERHVQDALMGCFEAGSFKQHAQQGTFQLLNSKEW
HDCMATMHTLLVENTKDPNLETSNEEYKNFLKNFDESLNYEKKFWAHLCE
LGLKKGIAAYKNAAPENYGSATHRQLLAEATLAFEEEGRGPQAQAALAKL
ASICHKHWQDGRQQCEQLSLRSHPCTLPKKVPHEKHNSGVIHISSCNCGR
TQGRREDPFNLRQANYEFYEHIAQMCNLCVKVKQYQFPIFEPSVSDYRAA
AFEAAFPLLNNGKSGAPQDEDAEEDEAEEEEGQEQEQPTEEQLQNTASNC
CSQPLSPTFGSDLNMSIAGFGASLKESQASSEQLLNSEQNTTSSGTSSAD
TDNELVVELQEPAKKEAREDAGPAHAVSTSTTEYLPGLVHTVSNFGLLPL
FPSWSLACVGPSSIYSHNTGLQEHFQSGFLSGANFLLPWDVQLRLVHAPK
QQYQQQHHGKKQQRWKKQGDRLSLKIFVGMEYECSRGHRFMMCAPDRVLR
GGADIERETCSMVVHNNMPLYYPCPCRSQNNFLAQLMRIHVVTPKAPVNI
IVDPKVCVGRYTFTMGSIVPPRLSQSAYWIIRLPYVYQGDDVLIAPPEQL
DPGYPLTGGYLLPGMFGVVETDPTLDLNEPDKMGASAAGNFTRIASFLDH
BO28558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6729-PA | 944 | CG6729-PA | 1..944 | 1..944 | 5056 | 100 | Plus |
