BO28559.complete Sequence
2941 bp assembled on 2011-08-04
GenBank Submission: KX799917
> BO28559.complete
GAAGTTATCAGTCGACATGCCGCCCACGGAGACACTGCGTCCGGGAGAAC
GCGGAACAGCCGGTGGACCGGGAGCAGGAGCACCCGAACAAACGTACATC
GTCAGGCAGAGCAACAAATACTATGAACACCGAGATTCCCAGGCCACGGC
CATGTCGGTTGATTACTCGGGTCAGTGGGTGCTCCTCGCGGGCCGTGGTC
ACCTGGCTTTGCAGCGTTTGGGACAGGACGATGGGTCTCTGCGACGACAT
GAACGGCAATCGAAGTACGAGGTGTCCGTAGCAGAGTTTGCCATATGTCC
CAGTCGCAAAGAGTACTGCGCCATAGCGACTAGCCAGCACATAGACATCG
TTCGCTGGGGCACTGCGGAACCACACTACGAGATGTCCTTGCGTGGGCAT
ACTCGAACAGTGACCGACATTGACTGGCACGGCAAGGATCCGAATCTGCT
GGTCAGCTGCTCAATAGACACATTTTCTCATATTTGGGACTTAAGGGAGC
CCAGGAAACCAGCCCTGTCCTTGAATGCCGTGTGCATGTCTGGTGCTACA
CAAGTGGGATTCAACCGCGTTTCGGGCAACCTTTTGGCTGCTGCCCATGA
TGGAGATTTACGCATCTGGGATATTCGCAAGGGTAGTTGCCCGACGCACT
ATATCACAGCACATTTAAATAGAGTGCATGGCATCAATTGGAGCCACAAA
AGGGAGACCTGCTTGGCAACCGCCAGTCAGGATGGAACGGTCAAGTACTT
TGATGTATGTAATCCTCGCAGGGCCGAGAAGATCATTACAACCATGTCGC
CCGTTTGGAGAGCGAGATACACGCCTATTGGCAACGGTCTGGTTAGCATT
GTGGTGCCCCATTTGGGACGCGGAGAGAATAGTTTGCTGCTCTGGAGCAA
CAGCAAGCAAACGGACCCTATTTGTTCCTTCGTGGGGCACACCGATGTCA
TTCTTGACTTTGCCTGGCGTCCAAATCGTGAAAGTTCCAATGAAATAGAA
CTGGTCACTTGGTCCAGGGATCGCACGCTGCGGGTGTGGAAGATCGATGA
TAATATGCTAAAGCTTTGCGAACCGTCTGCGGAAGAAATAGAATCCCGTT
TCGAGCCCGATCTCAGTGAGTTAAGAGTGCCTACTCCTCCAGAATTCCTG
CATCCACGATCAATTTTGGTTGCCGCTTCGTTGCCCATATCCACGGGTGA
CGGTGCTTGTAATACCTTGCCCATGGCTCGCTCCCCGAGCTTTGGAGGTG
GCTACTATCGCAGGGAAGAGCCCCACATAGCCAGATCACTAACAGATCAA
CCCACGTGTTCGCTGCACCACGAATTCTCGCTGCTCAACACAAACATGCC
TCATGTGGAGGTAGACACACTAGATGCCATAAAGCGGTACGCCTGCTTCA
AGATTTGCGCCGGTGGACACACGGTTATTTTACAAGTGACTTTCACGACA
TCGTATCCAAGTCCTAGTGCTCCGCCGGACTTTCAGCTTTGCCAGGGAAC
CACTCTGTCCAGTGAAGTTAGTGGAGTTCTGCTAAAAGTGCTCCGTTGCA
ATGCATTGCAACGGGTCAAGAAATCCCGCACGTGCCTGGAACAATGCCTA
CGTGCTCTAGTGGCGGCTATGAAGAAAAAGGTGGCCGCTGTAGGCGGAGC
GGATCGTAGCCAACTGCTCCTGCAATCCCCTCGGCTGGAAGGAGCTTTGT
CGAGCACCCTGCACGATGCCTGCATTCCATATCCGCGGACGTCAGGGGTC
CATTTCAATGCCATTGGTATGCTGACCACTTTCGCCCAACCAGTGAACAA
CAAAAGGCTGACCCTGCGGCAACACACCGCATTGACTCCACGGACTTTTT
CATCGATTAATGGTAGTGGATTGCTAGGCAATGTGATGGCCACCGCCCAG
AGGGAAGCTAACGCCTCCTTTTACCTCCAGGAGAGGATGATTTCGGGAAA
ACCGGGCAAGCAGCGAGCCATCCGACAGATGAATGGAAGTCCGGTGGTTC
ACGTATACGACACAAGTAGCTTACTCCACATTAGTCGGAGAATGGCTCGG
GAGTTCTCCCTCGATAAGTGCAACATAGCAGAAACGTGTCGTAAAAATGG
TGAGATCTGTCGCCAGCATGGGCGCTTGGACTTGGTGCCCGTGTGGCTAT
TGGCGGAACTGATAGCCACACCCCAAATTCCACATGAAACACTCAACGAT
CTGCTGTTCTACAAAGATCCCTTCAAGAAATCTCTGCTGGAATCACTAAT
AATGCATTATGCTATCTCCGGTGACATACAGACTGCTGTGCTGCTGGCTT
GTTTGTTTGACAAGTGCCCCACGGGTGGCGGTGCCATTATGGAGAAGACA
GTTCGACTTCCGCCGCAGCTTAACTCGCAAATTTCACCGTATCACACGGT
CCTGCCGCTTGACGTCAAGTCATCTTCTTCATCGAACACTTGGCAGCAAC
TTAAGCAACTACGCAGCAACTCTTGGTCCGACTCCCTGGATTTGGAGATT
AAGCAAATCCAGTCTGATGCATACGCTTGCTCATTGATTAGACGGACTAA
GATGCCACTGTTTGATCAATTTAAGCGCGCCTATGCCGAAATTTTATTTG
GCTGGCAGTTGCTTTCGAAGCGGGCTTTGATCCTCAAGCACACGCAGAAT
ACACCACCTCCAGTCCAGGGTGTGGAATTCGTTACCGAGTGCAGGAAGTG
TGCCAAGCCCAAACGGACGCCCAAATGCGAGCCCTGCAAGCGACCCGTAC
TCTTCTGCGTCCTCTGCCGTTTGCCTGTGAAAGGAGCAGCCAATGCGTGT
CTGGCTTGTGGCCATGGCGGTCACATTGATCACATGATGCAGTGGTTTGA
GAAACACAATGTCTGTGCTACGTGTGGCTGCAAGTGCTTGGAGCGCACCT
CAGAGCTGCTAGCCCTACTCAGCGCAAGCTTTCTAGACCAT
BO28559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4705-RD | 2910 | CG4705-PD | 1..2907 | 17..2923 | 14535 | 100 | Plus |
| CG4705-RB | 2910 | CG4705-PB | 1..2907 | 17..2923 | 14535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4705-RD | 3292 | CG4705-RD | 124..3030 | 17..2923 | 14535 | 100 | Plus |
| CG4705-RB | 3197 | CG4705-RB | 124..3030 | 17..2923 | 14535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11092782..11094635 | 998..2851 | 9270 | 100 | Plus |
| 2L | 23513712 | 2L | 11091567..11091878 | 17..328 | 1560 | 100 | Plus |
| 2L | 23513712 | 2L | 11092209..11092492 | 540..823 | 1420 | 100 | Plus |
| 2L | 23513712 | 2L | 11091941..11092152 | 328..539 | 1060 | 100 | Plus |
| 2L | 23513712 | 2L | 11092552..11092727 | 823..998 | 880 | 100 | Plus |
| 2L | 23513712 | 2L | 11094757..11094834 | 2846..2923 | 375 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:56:46 has no hits.
BO28559.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:54 Download gff for
BO28559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4705-RB | 126..3032 | 17..2925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:30 Download gff for
BO28559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4705-RB | 124..3030 | 17..2925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:21 Download gff for
BO28559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4705-RB | 124..3030 | 17..2925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:21 Download gff for
BO28559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11094763..11094834 | 2852..2925 | 97 | | Plus |
| 2L | 11091567..11091878 | 17..328 | 100 | -> | Plus |
| 2L | 11091942..11092152 | 329..539 | 100 | -> | Plus |
| 2L | 11092209..11092492 | 540..823 | 100 | -> | Plus |
| 2L | 11092553..11092726 | 824..997 | 100 | -> | Plus |
| 2L | 11092782..11094635 | 998..2851 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:30 Download gff for
BO28559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11094763..11094834 | 2852..2925 | 97 | | Plus |
| arm_2L | 11091567..11091878 | 17..328 | 100 | -> | Plus |
| arm_2L | 11091942..11092152 | 329..539 | 100 | -> | Plus |
| arm_2L | 11092209..11092492 | 540..823 | 100 | -> | Plus |
| arm_2L | 11092553..11092726 | 824..997 | 100 | -> | Plus |
| arm_2L | 11092782..11094635 | 998..2851 | 100 | -> | Plus |
BO28559.pep Sequence
Translation from 16 to 2941
> BO28559.pep
MPPTETLRPGERGTAGGPGAGAPEQTYIVRQSNKYYEHRDSQATAMSVDY
SGQWVLLAGRGHLALQRLGQDDGSLRRHERQSKYEVSVAEFAICPSRKEY
CAIATSQHIDIVRWGTAEPHYEMSLRGHTRTVTDIDWHGKDPNLLVSCSI
DTFSHIWDLREPRKPALSLNAVCMSGATQVGFNRVSGNLLAAAHDGDLRI
WDIRKGSCPTHYITAHLNRVHGINWSHKRETCLATASQDGTVKYFDVCNP
RRAEKIITTMSPVWRARYTPIGNGLVSIVVPHLGRGENSLLLWSNSKQTD
PICSFVGHTDVILDFAWRPNRESSNEIELVTWSRDRTLRVWKIDDNMLKL
CEPSAEEIESRFEPDLSELRVPTPPEFLHPRSILVAASLPISTGDGACNT
LPMARSPSFGGGYYRREEPHIARSLTDQPTCSLHHEFSLLNTNMPHVEVD
TLDAIKRYACFKICAGGHTVILQVTFTTSYPSPSAPPDFQLCQGTTLSSE
VSGVLLKVLRCNALQRVKKSRTCLEQCLRALVAAMKKKVAAVGGADRSQL
LLQSPRLEGALSSTLHDACIPYPRTSGVHFNAIGMLTTFAQPVNNKRLTL
RQHTALTPRTFSSINGSGLLGNVMATAQREANASFYLQERMISGKPGKQR
AIRQMNGSPVVHVYDTSSLLHISRRMAREFSLDKCNIAETCRKNGEICRQ
HGRLDLVPVWLLAELIATPQIPHETLNDLLFYKDPFKKSLLESLIMHYAI
SGDIQTAVLLACLFDKCPTGGGAIMEKTVRLPPQLNSQISPYHTVLPLDV
KSSSSSNTWQQLKQLRSNSWSDSLDLEIKQIQSDAYACSLIRRTKMPLFD
QFKRAYAEILFGWQLLSKRALILKHTQNTPPPVQGVEFVTECRKCAKPKR
TPKCEPCKRPVLFCVLCRLPVKGAANACLACGHGGHIDHMMQWFEKHNVC
ATCGCKCLERTSELLALLSASFLDH
BO28559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4705-PD | 969 | CG4705-PD | 1..969 | 1..969 | 5156 | 100 | Plus |
| CG4705-PB | 969 | CG4705-PB | 1..969 | 1..969 | 5156 | 100 | Plus |
| CG7609-PB | 776 | CG7609-PB | 18..311 | 40..338 | 184 | 24.3 | Plus |
| CG7609-PC | 777 | CG7609-PC | 18..311 | 40..338 | 184 | 24.3 | Plus |
| CG10931-PA | 345 | CG10931-PA | 83..303 | 114..348 | 167 | 25 | Plus |
