BO28561.complete Sequence
2551 bp assembled on 2011-08-04
GenBank Submission: KX797385
> BO28561.complete
GAAGTTATCAGTCGACATGCCGGCCAAAGTTAATAAAAAGGAGAATTTAG
ATGATCTCAAACAGGAGTTGGATATCGATTTTCATAAAATCTCTCCTGAG
GAATTGTATCAGCGCTTTCAGACACATCCCGAAAATGGTCTAAGTCACGC
CAAGGCCAAGGAAAACTTGGAGCGCGATGGTCCCAATGCGCTGACGCCAC
CCAAGCAGACGCCCGAATGGGTGAAGTTCTGTAAGAACCTGTTCGGTGGC
TTCGCCATGTTGCTGTGGATCGGTGCTATTCTCTGCTTTGTGGCCTATTC
TATCCAGGCCAGCACCAGCGAGGAGCCGGCCGACGATAATTTGTATCTGG
GTATTGTACTTTCCGCTGTCGTCATCGTGACGGGCATTTTCTCATACTAT
CAGGAATCGAAAAGTTCTAAGATCATGGAATCGTTCAAGAACATGGTACC
CCAGTTCGCCACCGTCATCCGCGAGGGCGAGAAACTCACGCTGCGCGCTG
AGGATCTCGTTCTGGGCGATGTCGTTGAGGTGAAGTTCGGCGACCGTATC
CCCGCTGATATCCGCATCATCGAGGCGCGCAACTTCAAGGTGGACAACTC
CTCGCTGACCGGCGAGTCGGAGCCGCAGTCCCGCGGTGCCGAGTTCACCC
ATGAGAATCCGCTGGAGACCAAGAATCTGGCCTTCTTCTCCACCAACGCC
GTCGAGGGCACTGCCAAGGGTGTGGTCATCAGCTGTGGCGATCACACCGT
CATGGGCCGCATTGCTGGCCTTGCCTCCGGTCTAGACACCGGCGAGACGC
CCATTGCCAAGGAGATCCACCATTTCATCCACCTTATTACCGGCGTGGCC
GTGTTCCTGGGCGTCACCTTCTTCGTGATTGCCTTCATCCTGGGCTACCA
CTGGCTGGACGCTGTCATCTTTTTGATCGGTATCATCGTCGCCAACGTGC
CCGAGGGTCTGCTGGCCACCGTAACTGTGTGCCTGACCCTTACCGCCAAG
CGTATGGCCTCAAAGAACTGTCTGGTGAAGAATCTGGAGGCCGTGGAGAC
CCTTGGCTCCACATCGACCATCTGCTCCGATAAGACCGGCACCCTCACCC
AGAACCGAATGACGGTCGCCCACATGTGGTTCGATAATCAGATCATCGAG
GCCGACACAACTGAGGATCAGTCGGGTGTTCAATACGATAGAACCAGCCC
TGGATTCAAGGCGCTCTCTCGCATTGCCACTCTCTGTAACCGTGCCGAGT
TCAAGGGAGGCCAAGATGGCGTCCCAATCCTCAAGAAAGAAGTCAGTGGA
GATGCCTCCGAGGCTGCTCTGCTCAAGTGCATGGAACTGGCTCTGGGCGA
TGTGATGAACATTCGCAAGCGTAATAAGAAGATTGCCGAGGTGCCCTTCA
ACTCCACCAACAAATACCAAGTGTCCATCCACGAAACCGAGGATACCAAC
GATCCCCGCTACTTGCTCGTAATGAAGGGAGCCCCCGAACGTATCTTGGA
GCGCTGCTCTACCATTTTTATCAACGGCAAGGAGAAGGTTCTGGACGAGG
AGATGAAGGAGGCGTTCAACAATGCCTACATGGAACTCGGTGGACTGGGT
GAGCGCGTGCTCGGTTTCTGTGACTTTATGCTGCCATCCGACAAGTATCC
CAACGGCTTTAAGTTCAACACCGACGACATCAACTTCCCCATCGATAATC
TGCGTTTCGTCGGCCTTATGTCCATGATTGATCCCCCACGTGCTGCCGTG
CCCGATGCCGTTGCCAAGTGCCGATCGGCCGGCATCAAGGTCATCATGGT
CACCGGCGATCACCCGATCACTGCCAAGGCCATCGCCAAGTCTGTCGGTA
TTATATCCGAGGGCAACGAGACCGTCGAGGACATTGCCCAGCGCCTCAAC
ATACCCGTCTCTGAAGTGAATCCCCGCGAGGCCAAGGCCGCCGTCGTCCA
TGGCGCTGAGCTTCGTGATGTGTCCAGCGACCAGCTGGATGAAATCCTCC
GCTACCACACCGAGATCGTCTTCGCCCGTACCTCGCCCCAGCAGAAATTG
ATCATTGTCGAGGGTTGCCAGCGCATGGGAGCTATTGTGGCCGTGACTGG
TGATGGTGTCAACGATTCTCCCGCTCTGAAGAAAGCCGATATCGGTGTTG
CCATGGGTATAGCCGGTTCCGATGTGTCCAAGCAGGCTGCTGACATGATT
TTGCTGGACGACAACTTTGCCTCCATTGTGACTGGTGTGGAGGAGGGTCG
CCTGATCTTCGACAACCTGAAAAAGTCCATCGCCTACACCCTGACCTCCA
ACATTCCCGAAATCTCGCCCTTCCTGGCCTTCATCCTCTGCGATATACCA
CTGCCACTGGGAACCGTGACGATTCTTTGCATCGATCTGGGCACTGACAT
GGTAAGTTTAGACCTCTGCCCCAAACCCAAGCTCCATCGAAGATTAAAGT
TAAAGTTGCTATTAAGTCAGTATCATTCGAGCAAGTTATATAGTTATACA
AGTTGTAGCCCATCCCAGTTAATAGTTAAGAACGCAAGCTTTCTAGACCA
T
BO28561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atpalpha-RD | 2520 | CG5670-PD | 1..2517 | 17..2533 | 12585 | 100 | Plus |
| Atpalpha-RK | 3009 | CG5670-PK | 1..2387 | 17..2403 | 11935 | 100 | Plus |
| Atpalpha-RJ | 3009 | CG5670-PJ | 1..2387 | 17..2403 | 11935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atpalpha-RD | 5099 | CG5670-RD | 547..3063 | 17..2533 | 12585 | 100 | Plus |
| Atpalpha-RK | 3721 | CG5670-RK | 307..2693 | 17..2403 | 11935 | 100 | Plus |
| Atpalpha-RJ | 5545 | CG5670-RJ | 229..2615 | 17..2403 | 11935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20964255..20966040 | 401..2186 | 8930 | 100 | Plus |
| 3R | 32079331 | 3R | 20966396..20966745 | 2184..2533 | 1750 | 100 | Plus |
| 3R | 32079331 | 3R | 20963927..20964194 | 137..404 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 20963737..20963857 | 17..137 | 605 | 100 | Plus |
| 4 | 1348131 | 4 | 3376..3668 | 2021..2313 | 340 | 74.4 | Plus |
| 4 | 1348131 | 4 | 2350..2499 | 986..1135 | 225 | 76.7 | Plus |
| 2R | 25286936 | 2R | 23931450..23931536 | 1127..1041 | 195 | 81.6 | Minus |
| 2R | 25286936 | 2R | 23930387..23930450 | 2157..2094 | 185 | 85.9 | Minus |
Blast to na_te.dros performed 2014-11-27 00:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Newton | 1510 | Dbuz\Newton NEWTON 1510bp | 1060..1114 | 83..140 | 130 | 72.4 | Plus |
| Dbuz\Newton | 1510 | Dbuz\Newton NEWTON 1510bp | 398..451 | 140..84 | 125 | 71.9 | Minus |
BO28561.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:59 Download gff for
BO28561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RD | 520..3036 | 17..2535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:21 Download gff for
BO28561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RD | 547..3063 | 17..2535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:48 Download gff for
BO28561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atpalpha-RD | 547..3063 | 17..2535 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:48 Download gff for
BO28561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20963737..20963856 | 17..136 | 100 | -> | Plus |
| 3R | 20963927..20964193 | 137..403 | 100 | -> | Plus |
| 3R | 20964258..20966039 | 404..2185 | 100 | -> | Plus |
| 3R | 20966398..20966745 | 2186..2535 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:21 Download gff for
BO28561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16789459..16789578 | 17..136 | 100 | -> | Plus |
| arm_3R | 16789649..16789915 | 137..403 | 100 | -> | Plus |
| arm_3R | 16789980..16791761 | 404..2185 | 100 | -> | Plus |
| arm_3R | 16792120..16792467 | 2186..2535 | 99 | | Plus |
BO28561.pep Sequence
Translation from 16 to 2551
> BO28561.pep
MPAKVNKKENLDDLKQELDIDFHKISPEELYQRFQTHPENGLSHAKAKEN
LERDGPNALTPPKQTPEWVKFCKNLFGGFAMLLWIGAILCFVAYSIQAST
SEEPADDNLYLGIVLSAVVIVTGIFSYYQESKSSKIMESFKNMVPQFATV
IREGEKLTLRAEDLVLGDVVEVKFGDRIPADIRIIEARNFKVDNSSLTGE
SEPQSRGAEFTHENPLETKNLAFFSTNAVEGTAKGVVISCGDHTVMGRIA
GLASGLDTGETPIAKEIHHFIHLITGVAVFLGVTFFVIAFILGYHWLDAV
IFLIGIIVANVPEGLLATVTVCLTLTAKRMASKNCLVKNLEAVETLGSTS
TICSDKTGTLTQNRMTVAHMWFDNQIIEADTTEDQSGVQYDRTSPGFKAL
SRIATLCNRAEFKGGQDGVPILKKEVSGDASEAALLKCMELALGDVMNIR
KRNKKIAEVPFNSTNKYQVSIHETEDTNDPRYLLVMKGAPERILERCSTI
FINGKEKVLDEEMKEAFNNAYMELGGLGERVLGFCDFMLPSDKYPNGFKF
NTDDINFPIDNLRFVGLMSMIDPPRAAVPDAVAKCRSAGIKVIMVTGDHP
ITAKAIAKSVGIISEGNETVEDIAQRLNIPVSEVNPREAKAAVVHGAELR
DVSSDQLDEILRYHTEIVFARTSPQQKLIIVEGCQRMGAIVAVTGDGVND
SPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDN
LKKSIAYTLTSNIPEISPFLAFILCDIPLPLGTVTILCIDLGTDMVSLDL
CPKPKLHRRLKLKLLLSQYHSSKLYSYTSCSPSQLIVKNASFLDH
BO28561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atpalpha-PD | 839 | CG5670-PD | 1..839 | 1..839 | 4290 | 100 | Plus |
| Atpalpha-PK | 1002 | CG5670-PK | 1..796 | 1..796 | 4067 | 100 | Plus |
| Atpalpha-PJ | 1002 | CG5670-PJ | 1..796 | 1..796 | 4067 | 100 | Plus |
| Atpalpha-PA | 1041 | CG5670-PA | 40..835 | 1..796 | 4067 | 100 | Plus |
| Atpalpha-PH | 1002 | CG5670-PH | 1..796 | 1..796 | 4067 | 100 | Plus |
