BO28563.complete Sequence
1777 bp assembled on 2011-10-14
GenBank Submission: KX799441
> BO28563.complete
GAAGTTATCAGTCGACATGGTAGCTAAATGGTTGAAACGGCTGGACGAGG
TGAAAGGTGAAGAGAAATCCCAGCAGGACAAAGAAATGGAATCCGAGTCA
CCAGCTCAGAACCAAGAGAAACAGAAAGTACTAGCTAACCCATCAGTTGT
GGACCTTTGCAGCGATGAAGAAGTTGAGAAATCAGTTGTTCGTTTTCGTG
ATATGGAAACACTGGACGTGGAATCAGTTATCCCCAATTCCTCGCTTATG
GTCCTTGACGATGAGCTGGGCGAGATCACCCTGCAGGACTATGCTGATCA
CATCAATGGAAAATTGGATGAAGCGTCTTTGAGGAAGCGAAATCGCCGGG
AGGAGGATAGCCCATCTCATAACGCCAAAAAACAGAGATCGATAAAAGAG
TTTTTGACTCCCAAGAAATCAAAGCAAGGCCAAACATCATCTTTTGCCTT
CCAGCGCTGTTTGAAAACGTATAGCAGACGACCAAAGCTAGAAAATTATA
CAAGTGGCGAAGCAGGCGGTATCACATCCAACATAGTTATGGTTGATGAA
AGTCAAGAAGAAGCCCGCGAATCTCTTATAATTGATAATCCAAAACCAAA
AACCCCAACAGATTGGAGGGAGCCTAACCAAAGTGATATCATGAAAGAGG
TATCAAATTCCGACGACTTGATCGAGAAAGAAACTTCACCCTGTGATCCC
TTAGCAAGCTTAGATATTAATGTTCCAAGTAAATCCGACCCAGAAGTGCC
TTCTGAAATTTATGGAGAAGCGAACAAAAATATAAACATATTGAACGAAT
CACCAAAGAACATGCCGCTCCTGAAGGACATACTTTCAACTGACCCAGAG
GCTCATAAAGAAAATAATCCTGATATGAGTATAACACCAGAAGTTCCCAC
CCAATCCCCAATAAATGCGATACGAATTCGTAGTGACCTGGTTCCCTACG
CAGAGAATATGATTCGGGTTCGCACTGACCTGTTGCAGGAGCAAGTTGAC
CCGTCTGAACCTTTCAAGGCACTGGGAACAGCTGAAAAGCTAAGGTTGTT
ACCGCCAGGAAAACAGTGCAATAGCCTACAGCCGAAAACCACAGACATGG
ATGACTATAATCCCACATCAGTGACAACATCTACAAATTCACCGAATTTT
CCGGATGCCGATGCACCAGGAATTACCTATACCTATCAAATAAATAGGCT
ACCATCACCACCTGCTCCAGCCACAACATCCAGCAATCCGGCGACTGCTC
CCTATAATGCTTCTCCAGTTTCTACCCAACCCTCTGGTCTGCTGCCCGCA
CCAGTATTCCACGACGAAAATCCACGACCTCTCTCGGTAGTTACTACTTC
TGTAATCAACTCCCGCTATCCAGTGGATCCGCGACCAGCCAATTCGTATT
GGTACACTCGACCAAATCATCATCCAGCTACTCCGGTGGTTCCGACTCCG
ACCAGTACCACGTCCATTTATCAGCCGACCACCAGCTCCAGTTACCAAGG
ACAAAACCCTGTGCCTGCTGTACTGTCTAGTGGTTATATTCCTGGGCCTC
CTGATTCCAGAGCTGCAAATAATAATGCGCCTATTGGAAGCAATCCTCGC
ACCGACTTGACCAACATCATGCGCATGCTAGCTGACGTGTCGTTCTTTGC
CTATTGTCAAAACAATAGGGAGGCTTACCATCTGGTCAATCAGCTACGCC
ACAGTCTTCAGACGGGAGCCTCAAATCGTTTCCAAGCTCCCAGCGAAATG
TTTGACCATGCAAGCTTTCTAGACCAT
BO28563.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17129-RB | 1746 | CG17129-PB | 1..1743 | 17..1759 | 8715 | 100 | Plus |
| CG17129-RA | 1746 | CG17129-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
| CG17129-RC | 1746 | CG17129-PC | 1..1743 | 17..1759 | 8715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17129-RB | 2310 | CG17129-RB | 444..2186 | 17..1759 | 8715 | 100 | Plus |
| CG17129-RA | 2379 | CG17129-RA | 513..2255 | 17..1759 | 8715 | 100 | Plus |
| CG17129-RC | 2201 | CG17129-RC | 335..2077 | 17..1759 | 8715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 678003..679745 | 1759..17 | 8715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:40:25 has no hits.
BO28563.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:04 Download gff for
BO28563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17129-RB | 440..2182 | 17..1761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:16 Download gff for
BO28563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17129-RC | 335..2077 | 17..1761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:14 Download gff for
BO28563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17129-RC | 335..2077 | 17..1761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:14 Download gff for
BO28563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 678000..679745 | 17..1761 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:16 Download gff for
BO28563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 678000..679745 | 17..1761 | 99 | | Minus |
BO28563.pep Sequence
Translation from 16 to 1777
> BO28563.pep
MVAKWLKRLDEVKGEEKSQQDKEMESESPAQNQEKQKVLANPSVVDLCSD
EEVEKSVVRFRDMETLDVESVIPNSSLMVLDDELGEITLQDYADHINGKL
DEASLRKRNRREEDSPSHNAKKQRSIKEFLTPKKSKQGQTSSFAFQRCLK
TYSRRPKLENYTSGEAGGITSNIVMVDESQEEARESLIIDNPKPKTPTDW
REPNQSDIMKEVSNSDDLIEKETSPCDPLASLDINVPSKSDPEVPSEIYG
EANKNINILNESPKNMPLLKDILSTDPEAHKENNPDMSITPEVPTQSPIN
AIRIRSDLVPYAENMIRVRTDLLQEQVDPSEPFKALGTAEKLRLLPPGKQ
CNSLQPKTTDMDDYNPTSVTTSTNSPNFPDADAPGITYTYQINRLPSPPA
PATTSSNPATAPYNASPVSTQPSGLLPAPVFHDENPRPLSVVTTSVINSR
YPVDPRPANSYWYTRPNHHPATPVVPTPTSTTSIYQPTTSSSYQGQNPVP
AVLSSGYIPGPPDSRAANNNAPIGSNPRTDLTNIMRMLADVSFFAYCQNN
REAYHLVNQLRHSLQTGASNRFQAPSEMFDHASFLDH
BO28563.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17129-PB | 581 | CG17129-PB | 1..581 | 1..581 | 3037 | 100 | Plus |
| CG17129-PA | 581 | CG17129-PA | 1..581 | 1..581 | 3037 | 100 | Plus |
| CG17129-PC | 581 | CG17129-PC | 1..581 | 1..581 | 3037 | 100 | Plus |
