BO28564.complete Sequence
2122 bp assembled on 2011-08-04
GenBank Submission: KX799825
> BO28564.complete
GAAGTTATCAGTCGACATGACGAATAATGCGAAGAAGGAACCCCAGCAAA
GGGGCAAGCATCAGGTGCATAATGTGCGCTTCTACACTATAAAGCCGCGT
GAAATTGTCAGCTTGGCGTATAGTAAATCGAGCAAGTGCCTCGCTCTGAG
TCGTGCAACACCCGTCATTGAGCTATGGAACCTGGAGCACGCCCCGTATT
TGGATCGTGTAATCCACCTGCCCACCGATTCTCATGTGGAATCTATAGCC
TGGGCGGGAAACCGCTTATTTTCCGTGGATTTAAGTGGTAAACTGATCGA
GTGGGATGTGATTAAGCTAAAACAACGATATGAGCACTCGCCCACTGGCA
ATGCTCTCTGGAGTATCGATGTGAATCCCGCGGAAACGGATATTGCCATT
GGCTCAGAGGAAGGGCACATCAACATCCTGAGTATTGAGAATGACGAAAT
CACCTATAAATCCCTATTTAACAAGCAAAAAGGTCGCGTTCTCTGCATCA
AGTTTGATAAGACTGGAACTAAACTGGTGACCGGCACTGAGGGATTTGTT
CGCATTTGGAACGTCCTCAAGGGAACCACTCTGCACACGATGACCCTATC
CGAAAAGAACGTAATAGTTTGGTCCCTGCAGGTGCTATCCGATAATACGA
TTATTGCCGGTGATTCAGCGGGATTTGTTACCGTTTGGGATGCGGATAAC
GCGACACAGATAGATTCCACACGAGTTCTGGATAAAAACGTATTTGCCCT
GGCTGTGAATAATAAGGAGGATCGATTAGTTTGCAGTGGAATGCAGCCGC
CGCTCATCCGGATTTTCAGCAAAACCAAGATAAAGCGGGAAGAGTCCACC
AGCGAGCGTTGGATTAAATTCCTACAGCGCGATGCCCACAAACACTATGT
GAAATCCCTGTTGGTTATCGACGATCAAATTTATTCGGGAGGCAGGGATG
GCATATTGACCATTACGTCCAGTGAACGAATGCAGGCACATTTGTCGCAG
CATGCTCCCTTTCTGAAAGGTTCCGTAGCTTCCATGGCAATCAGTAAAAA
GCTTTTGCTTTTGCGATATCCCAACAGCGTGCACCTGTGGCGCTTGGGTT
CTGTGGCCCCGCAAGGCGAGGACAAGAAGAAACCCTGGGCACTGCCCGTC
GGCCACACGGAGGAACAACTTCTGGAGCTGCCACCCCAGAAACTTCTCCA
ACTAAATGTCAAAGAGCACAACTTTATACAGTCTGCTGCCATTTCATCAG
ATGCAAACTGGATTTGCTACTCTACCTTAAAGGAACTCCGAATCAGTCGT
TTGAAAAGTGATCCCCTGCAGGTGGAGCGTCTGGTAGACGATCTTCCCGA
GGAACTTCAACCAGCCAGTCATATAATTTTCACAAAGCAGGGAGATCTAG
TGCTGCTCAACCCGCAGAACAATCATCTAAGTTGGTTTACTTTAGAGGAA
GATCTGGTTACATTCAAATATACCATCGATTTGAGTGAGAAGTGTAAGAA
TACGATTAGCCACGTGGTTATCTCTTCGCATGGCGAATACATTGTGGCTG
CGAGCTCAGACCACATAATATCAGTTTGGAAACTACATGGAAAACAATAC
AAGCACCTGCTGAACCTACCAAGACACCGAGCAGGTACCACCGCCCTATC
CATGCACGAGGATTACCCACGCGTGGTGGTCGCCTACGCCAATGGCCAGC
TGGTGGAGTACGATTTGGTCAATCGGATATTCACCTGTGAAACTAATGAG
TACCTGATACCCGAGACCAGGCGCCATTGCATCAATGGAATCAGCCTGGA
TCCACAAAATCGTAATATATTTATTGTTCACACCGAGGGCAATTTGTATG
TGTTGGAGAGGGATCAGCATCTGGATCCCAAAGAGCTTGTGAGCAACAGC
AAGTCTAAAAAGTTATCAAATGGAAACCGCTCTTCAGTTGATGGCGGCTC
AAAAGGCCTGAGCCTCAAGACGACTCTGTCACGACAGCACCTGGTGCACG
TGTCTCGCCTGAGCCCTAACGAACTTGTCAACGTCAGCATTTCGACAAAC
AATCTGTTGGCTCCGCTGCCGCCGCCGTACCAGCGGAAGAAGTTCGGTGC
CTCGGCAAGCTTTCTAGACCAT
BO28564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Dn-RA | 2091 | CG5018-PA | 1..2088 | 17..2104 | 10440 | 100 | Plus |
| l(3)72Dn-RB | 2100 | CG5018-PB | 1..2097 | 17..2104 | 10315 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Dn-RA | 2314 | CG5018-RA | 111..2198 | 17..2104 | 10440 | 100 | Plus |
| l(3)72Dn-RB | 2323 | CG5018-RB | 111..2207 | 17..2104 | 10315 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16226587..16228421 | 1987..153 | 9175 | 100 | Minus |
| 3L | 28110227 | 3L | 16228491..16228627 | 153..17 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 16226242..16226361 | 2104..1985 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:59:57 has no hits.
BO28564.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:53:59 Download gff for
BO28564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5018-RA | 63..2150 | 17..2106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:30 Download gff for
BO28564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Dn-RA | 111..2198 | 17..2106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:55 Download gff for
BO28564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Dn-RA | 111..2198 | 17..2106 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:55 Download gff for
BO28564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16226240..16226358 | 1988..2106 | 98 | <- | Minus |
| 3L | 16226587..16228420 | 154..1987 | 100 | <- | Minus |
| 3L | 16228491..16228627 | 17..153 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:30 Download gff for
BO28564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16219340..16219458 | 1988..2106 | 98 | <- | Minus |
| arm_3L | 16219687..16221520 | 154..1987 | 100 | <- | Minus |
| arm_3L | 16221591..16221727 | 17..153 | 100 | | Minus |
BO28564.pep Sequence
Translation from 16 to 2122
> BO28564.pep
MTNNAKKEPQQRGKHQVHNVRFYTIKPREIVSLAYSKSSKCLALSRATPV
IELWNLEHAPYLDRVIHLPTDSHVESIAWAGNRLFSVDLSGKLIEWDVIK
LKQRYEHSPTGNALWSIDVNPAETDIAIGSEEGHINILSIENDEITYKSL
FNKQKGRVLCIKFDKTGTKLVTGTEGFVRIWNVLKGTTLHTMTLSEKNVI
VWSLQVLSDNTIIAGDSAGFVTVWDADNATQIDSTRVLDKNVFALAVNNK
EDRLVCSGMQPPLIRIFSKTKIKREESTSERWIKFLQRDAHKHYVKSLLV
IDDQIYSGGRDGILTITSSERMQAHLSQHAPFLKGSVASMAISKKLLLLR
YPNSVHLWRLGSVAPQGEDKKKPWALPVGHTEEQLLELPPQKLLQLNVKE
HNFIQSAAISSDANWICYSTLKELRISRLKSDPLQVERLVDDLPEELQPA
SHIIFTKQGDLVLLNPQNNHLSWFTLEEDLVTFKYTIDLSEKCKNTISHV
VISSHGEYIVAASSDHIISVWKLHGKQYKHLLNLPRHRAGTTALSMHEDY
PRVVVAYANGQLVEYDLVNRIFTCETNEYLIPETRRHCINGISLDPQNRN
IFIVHTEGNLYVLERDQHLDPKELVSNSKSKKLSNGNRSSVDGGSKGLSL
KTTLSRQHLVHVSRLSPNELVNVSISTNNLLAPLPPPYQRKKFGASASFL
DH
BO28564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)72Dn-PA | 696 | CG5018-PA | 1..696 | 1..696 | 3615 | 100 | Plus |
| l(3)72Dn-PB | 699 | CG5018-PB | 1..699 | 1..696 | 3601 | 99.6 | Plus |
