BO28565.complete Sequence
2650 bp assembled on 2011-08-05
GenBank Submission: KX795604
> BO28565.complete
GAAGTTATCAGTCGACATGAACTTCGATTACATCGGCCAGGCCCTGGGCT
ACCACGGGCAGCCGCTCCAGAAGATCTGGGACGACGAGCGCGGCGTGGAC
GACCTGCGGCTGATGGGACTCACCCAGGTGAACTACGGGGTCTACCAGGA
GCGGCAGAAGTACTTCACCTTCCAGGAGCGGGCTAAGCGATTGAAGATGC
ACCAGTTTCTGGCCAGGAAGGCCACCGATTTGTATGATCGCACGCTGGTG
GCCAATGTTATGGAGGATTCCCTGCTGGCACAAGGCAACACATACATGAC
TCAGATGGCCCCCTTCGAGTTCTTCCTCAATGTGAAGGACAAACGCAAGG
GATGGGCGCACCGATTGTCTGCACTGAAGCAGGGCGACATCATCTACACG
CAGGTGACACGGCTGGCCAGCGGCAACCGGCTCATAGTGAAGCCACTCTG
CACTGCTGAGCCCAAACACGCCTACTTGGCTGACATTCCCATAAAGGCCG
TGATCCTGCAGGACTTCTGGGGTCCCTTGCCCCTGGACAAGCAGGGCAAT
CCGCGCAGCTTTGTCCAGAATGACATCTTGCGCTGTGAGATAAACAACAT
ATCCGCGGATACCGAGCGGCTCTCTCTGAACATGATCGGCATGTTCAATA
AGGTGCCGGATTTAAAGTTTGGTCTCTGCGACTTTAAGGAGTTGCCCAAG
TATTATAGTAAAATACATAACCTGGATCATCCATCTGCGTCTCACTACGA
GGATGAGCTAAACAAAGCCTTAGAGTTTGAAAATCCCAACTACGATTTGC
TGTTCCAAATGAACGGACTGCAGCCAAACGAGAATCTGTCACTGATGTCA
TATTTAAGGGCGGGATTCCCGGAGGAGGAGAACGCCGCGGAGTTGCGACA
GAAGCAGGCCTCCCAGTGGGCCTTCCGCTCCGTGGCTGATGGCATCGAAC
ACTTTAAGAACGGCCAACAGGTCGAGGCCTTTCAGTGCCTGAACAAGGCC
TTAAACATTGATCCGCGCAATGTTGAGGCGCTGGTGGCCCGCGGTGCCCT
CTACGCGAATCGCGGCAGCTTTCTTAAAGGGCTGCAGGACTTTGAGAAGG
CTCTGCACCTGAACAAGTATCACGTGAACGCGCGCAAATACATGGGCGAA
ACGCTGGTGGCTCTGGGTCGCAGCTACGAAGAGGAGAATCGCATAGCCGA
AGCCGTCAAGGCCTATAGCGATTGCCTAAATCTGTTGCCGCTGCACGAAG
AAGCACGCCAGTCCCTGGACGCACTGCATCGAAGTGGAGACGGTAAGCGT
AGAATAAGCACTGAGCCGTCGAACATGACCGGTGGCCAGTCCTCGGACGA
GTCCTCCTCATCGAGTGCCAGTGATAGTGAATGCGAAGATTCGGCTGGTA
AGCCCAAGTCAAACATTAGTCAGCCCTTTTATGCCCAACACAAGCTAAAG
CAATCGGGAGATGAAAAGTTGGCCGTCATTGATGCCCATAAGGCCAATGA
GTTCCGTTTGGACGACGACGAGACCGTGTCGAGTGTGCGGAAGCTTTTGC
GCGAGGCGAGCAAACACAAGAAGGCCAAGAAGAAGGGAAAGAAGAAAAAG
GACAAGAAGGAGCGAAGGAGGTCCAGGACCAAGTCCGAAACGGAGGATCC
CATTGAATTGCTTAAGAAGATCGACTTCCAGGAGGCCCTCAGACAAGACA
ACAAGCTCATGAACAGCACCAGGAGCGATGAGGAACGCAAGGCCAAGATC
AAGAGCTATCTAAAAGAAGGAGGAAAAGAGTCACCACCTCCCCCGCCACC
AATGAAAAAAACAGCAGTCTCATCTAGAAAGTCAAGCTTTGACAATGTGG
GACCCAGCACATCGCGTCATGCGGCCTCCGTTGTTGGCTTTGGAGGCGCC
CAGCCACCACCAGCGCCCAAGTTTCTGGGGCAAAAGAAACATCCGGAGCC
GGCACCCAAGCTCTCCTTTCAGATTAAGAAACGACCGCTGCAGATGGACA
AGCTGGGAATGCTGCGTCTAGCAGCGCCAGCGGAGCCACTCAAGGGAGGA
CGGAGCAGCAGCTCCCGCAGCCGGAGTAGGAGTAGAAGCCGCTCGCGAAG
TCGCTCACGTAATCGTCGGCTTGGAAGGAGCACGCGTTCGTCGCTCAGGA
GCCGGCGTTCTGGCTCGAGGTCCAGATCGATTAGCCGATCACGGTCGCGT
CGCCGACGTACCTACTCCCGTTCGCGCAGCCCCTCGCCACGCAGTTACGG
AAATCGCTTTGTGATTGGACGCTACCGTAATCGCCGAACTCGGCGTTCGC
GCTCCTTTCATCGTCGGCGTTCTCCATCGCCCATTTTGAAACGCCGATCG
CCTTCACCATTTGTGCCCCGTCGCACACCATCGCCGGCATCCCGCTATCG
ACGCAGCCGATCCCGCAGTCGCTCCCGCTCACGCAGTCGGAGTCCTCGAC
GCTTTCAGTCTCGCTACATGCCGAGGGATCGTGGCTCCGTGAATCGAAGC
AGGTACTCCTGGCACAATCCCCATAAACGCAGTGTATCACGCACCGTGGA
GCCAAATGGCAAAGATGAAAGGGCAGCTACTCCGCCGAAAAAGGGTGTTG
CTGATGATAGATCTGGACGAGAAGAAAGGGCGGCAAGCTTTCTAGACCAT
BO28565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6621-RA | 2619 | CG6621-PA | 1..2616 | 17..2632 | 13080 | 100 | Plus |
| CG6621-RB | 2607 | CG6621-PB | 1..2604 | 17..2632 | 12865 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:40:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6621-RA | 3115 | CG6621-RA | 350..2965 | 17..2632 | 13080 | 100 | Plus |
| CG6621-RB | 3103 | CG6621-RB | 350..2953 | 17..2632 | 12865 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:40:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10889918..10890845 | 2632..1705 | 4640 | 100 | Minus |
| 3R | 32079331 | 3R | 10891514..10891981 | 1394..927 | 2340 | 100 | Minus |
| 3R | 32079331 | 3R | 10891094..10891392 | 1692..1394 | 1495 | 100 | Minus |
| 3R | 32079331 | 3R | 10892914..10893182 | 285..17 | 1345 | 100 | Minus |
| 3R | 32079331 | 3R | 10892085..10892306 | 927..706 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 10892639..10892853 | 497..283 | 1075 | 100 | Minus |
| 3R | 32079331 | 3R | 10892363..10892576 | 708..495 | 1070 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:40:20 has no hits.
BO28565.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 12:12:19 Download gff for
BO28565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6621-RA | 349..2964 | 17..2634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:24 Download gff for
BO28565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6621-RA | 350..2965 | 17..2634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:50 Download gff for
BO28565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6621-RA | 350..2965 | 17..2634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:50 Download gff for
BO28565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10892915..10893182 | 17..284 | 100 | | Minus |
| 3R | 10889916..10890845 | 1705..2634 | 99 | <- | Minus |
| 3R | 10891082..10891391 | 1395..1704 | 97 | <- | Minus |
| 3R | 10891514..10891980 | 928..1394 | 100 | <- | Minus |
| 3R | 10892085..10892303 | 709..927 | 100 | <- | Minus |
| 3R | 10892363..10892574 | 497..708 | 100 | <- | Minus |
| 3R | 10892640..10892851 | 285..496 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:24 Download gff for
BO28565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6715638..6716567 | 1705..2634 | 99 | <- | Minus |
| arm_3R | 6716804..6717113 | 1395..1704 | 97 | <- | Minus |
| arm_3R | 6717236..6717702 | 928..1394 | 100 | <- | Minus |
| arm_3R | 6717807..6718025 | 709..927 | 100 | <- | Minus |
| arm_3R | 6718085..6718296 | 497..708 | 100 | <- | Minus |
| arm_3R | 6718362..6718573 | 285..496 | 100 | <- | Minus |
| arm_3R | 6718637..6718904 | 17..284 | 100 | | Minus |
BO28565.pep Sequence
Translation from 16 to 2650
> BO28565.pep
MNFDYIGQALGYHGQPLQKIWDDERGVDDLRLMGLTQVNYGVYQERQKYF
TFQERAKRLKMHQFLARKATDLYDRTLVANVMEDSLLAQGNTYMTQMAPF
EFFLNVKDKRKGWAHRLSALKQGDIIYTQVTRLASGNRLIVKPLCTAEPK
HAYLADIPIKAVILQDFWGPLPLDKQGNPRSFVQNDILRCEINNISADTE
RLSLNMIGMFNKVPDLKFGLCDFKELPKYYSKIHNLDHPSASHYEDELNK
ALEFENPNYDLLFQMNGLQPNENLSLMSYLRAGFPEEENAAELRQKQASQ
WAFRSVADGIEHFKNGQQVEAFQCLNKALNIDPRNVEALVARGALYANRG
SFLKGLQDFEKALHLNKYHVNARKYMGETLVALGRSYEEENRIAEAVKAY
SDCLNLLPLHEEARQSLDALHRSGDGKRRISTEPSNMTGGQSSDESSSSS
ASDSECEDSAGKPKSNISQPFYAQHKLKQSGDEKLAVIDAHKANEFRLDD
DETVSSVRKLLREASKHKKAKKKGKKKKDKKERRRSRTKSETEDPIELLK
KIDFQEALRQDNKLMNSTRSDEERKAKIKSYLKEGGKESPPPPPPMKKTA
VSSRKSSFDNVGPSTSRHAASVVGFGGAQPPPAPKFLGQKKHPEPAPKLS
FQIKKRPLQMDKLGMLRLAAPAEPLKGGRSSSSRSRSRSRSRSRSRSRNR
RLGRSTRSSLRSRRSGSRSRSISRSRSRRRRTYSRSRSPSPRSYGNRFVI
GRYRNRRTRRSRSFHRRRSPSPILKRRSPSPFVPRRTPSPASRYRRSRSR
SRSRSRSRSPRRFQSRYMPRDRGSVNRSRYSWHNPHKRSVSRTVEPNGKD
ERAATPPKKGVADDRSGREERAASFLDH
BO28565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6621-PA | 872 | CG6621-PA | 1..872 | 1..872 | 4507 | 100 | Plus |
| CG6621-PB | 868 | CG6621-PB | 1..868 | 1..872 | 4470 | 99.5 | Plus |
| CG6695-PB | 715 | CG6695-PB | 255..546 | 526..812 | 222 | 32.4 | Plus |
| CG6695-PA | 961 | CG6695-PA | 255..546 | 526..812 | 222 | 32.4 | Plus |
| Srp54-PA | 513 | CG4602-PA | 268..451 | 668..870 | 212 | 36.9 | Plus |
