BO28569.complete Sequence
2581 bp assembled on 2011-08-04
GenBank Submission: KX794108
> BO28569.complete
GAAGTTATCAGTCGACATGGACAAGGCACAACATCCACAGAAGCGGGAAC
AGAAGGAGGAGCTGGGAGGTAAGCCGGAGGAGAAGGAGCCAATTTGCGAG
GAGCAGCACGACGAAGAGTCCAACGAGCAGGGGGAAACACACAACGAGGG
TGGGGAAATGCCAAATAAAACCGATAAGCAAATGCAGGGGGGACGAGAGC
CCATCTATGAGAATGTCAGCTCGACTATATCTATGCATGAAGTAGATAAT
GAACAGATAGCAACTATGACGATAACCACACAGACCCAAGCGACGCGAAT
AAGTCACAGGAGAAGCATTCCAAGCCAGCAAACCAGCAACAGTAACGAGA
ATAATCAAAGCACTAATCAAACCAGCAACAGCAGGAATCAAAAAGAGAGC
AGCACAGCAGCAACATCGGCAGCGAACCCCGTGCCACCAACAACACCGGG
GGAACAAGCAGAGCCCTACTACCAAGTGCCGAAGGCCACGGAGCCCTACT
ACGATGCCCCCAAGCATTTAAGGCCGGTGCCGGTATACGAAAATGTCGAG
ATCTTTTACTCGGGCCTGGAGATTAGTCAGGGATCTGTGGGAGCGCCAGT
AGGGCTGATGGAGCCACCCAAGGAAAAGCCACCACCACCGCCCACCGAGA
GTCCGATTCCGCTGGACGAGGGCCATGACGACGAGCTGGATGGACTGGGC
AACAGTCTGGGCCACAACACAGACACCTGGTCATCGGACAACACCTACGA
GACCATATCGAACGGCACTCGCCGGCACCTTCAGGGACAACCGGAACCCG
CCCAACCCTCGCCGCCCATCAAGAGGATGAACTCGACCAAACGGATCAAG
AAGGAGTTGCGCAACAAGCGCTCCAGCTTCCTGGGCATCGAAAACGACGG
CGATCTTGACGACATGGAGACCTATCTCGAGCTAACAGTGGCCCCGCCTC
CGGATATGGCGCAGCTCTTGCAGGAGGAGCGGCGACTGGAGAAGCAGCTG
TACATCAAGGCGGGACTCTGCGACAGTTCCGACACAGGTGAAAGCCGCGA
TTCTGGAGTTTCTGAAAACCACTCTCGCCAGAGCAGTGAGCACTACACGA
ACTCCTCTGAGGAGAACGATACACAGTCAGAGGCCACACCGCCGCCATTG
CCTCCACCACCATCGACCGCCCAAGTGGGTGAAGTCATATACCAAAATGA
GAGCCTCCTGGCTGCCCAGACGCCGCTTCTCCAGACGGTAAAAGGAAACT
CCGCCGAGTCCTGGACCGAATCAGCAACGGCCGCAGCGGCGGCCACGCAA
TCATTGAGCGAAGCCACAGCAACGGCCAATGCCAAGATGCAGTCCATCGA
GGATAAGATCCGGGAGCAGGGAGAGATGTTGCGGGTGGAACGCGAGCTAC
TGCACTTCTCGCAAGAGGAACTGAAACGGCAACGTGAAAATCTTGTGCTT
CGAGAAAATATTGCTCGACGAGAGTTGCAACACGGAGCCAAGATGCTGAT
GTCGAACAACCGGCGCTCACTGCAGGATCTGCACCACGGTCTAGGAATCG
GAAACGGAATGCTCAGTGCCTTCCAGCCACCGCAACACCACCAGGTTCAA
ATGCCACCACCGCATCCGCAACAGATTTACGCCAATGTGCCGCAGCAGCA
GCAACAGATGGTTCTGCATGCATATCACCAGATGGACACGGACTACCGCA
AGTCCATGTCGGATCTAAACGAGTTCTCCAACTGCCTGATACTGCCGCCA
ACGCCGCCCACAAAGCCATTGAGGGCTATGCAATTGAACGCCAATGGCCA
TGGCCTGGAGCCAGATTACGCTGTTAGCACGAGGCAGCGCCAACCACCGG
CTCCGTACGGTGGCTCTCTGGTAAAGATTGCTGGAGCACCAATGCCGCCA
CGGCTCCCCGGTCAAGGATATCCCATTCAAGCGCCGACAGCGCCAGCATA
CCATCACCAGTCGGCCCAAAACTTAAGCAATATGTCCAGAAACACATTGC
TCGCTTTGAGTGCCACCCCCAAACCAAAATACGCGGACGGATGGGTGCAG
GTGCAGCAGCGGAAGAGTTATGACAGCCAACAGACCAGCGATGCGGCTTG
GCTGGCCGCTCAGCAGCAAAAGCGCAAATCCATGCCTGACTACGGCGGAG
CACTCTACAATAACAACCACTGGCTACTGCAGGAGGCGGAGCAGCGACGC
ATCGAGCAACTTAATCGGCGATCTATACCAGCCAGCAAGTCGATGGGCAA
ACCGCTGCCCGATTCCATCATACAAACTCTTACGGAGCGGGTCCAGAGCA
AAGGAATCGGCGATCGAAAGCGCTTCGATAGCAACGGGAACTATAGCCAG
GTAAATGGCAACAACATCTACCAGCAGCAACAGCAGCAGAAGAATGTGAC
GAATGGCAGCAGCATCAATGGCAACAGCAGCCAGGGGCAGGAGAAGGTGC
TCAGCGTTAGTGGCAAGAAGAAGTGCTCCCATTGCGGCGACGAATTAGAT
CTGGGCTGCACTCACGGCAATTGTCGGCAGGTGCACAAAGCGCTAAAATA
TATTGTTTGGGTGGCAAGCTTTCTAGACCAT
BO28569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43427-RJ | 2550 | CG43427-PJ | 1..2547 | 17..2563 | 12735 | 100 | Plus |
| CG43427-RH | 4482 | CG43427-PH | 1933..4479 | 17..2563 | 12735 | 100 | Plus |
| CG43427-RI | 2670 | CG43427-PI | 1..2482 | 17..2498 | 12410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43427-RJ | 4163 | CG43427-RJ | 281..2827 | 17..2563 | 12735 | 100 | Plus |
| CG43427-RH | 6180 | CG43427-RH | 2546..5092 | 17..2563 | 12735 | 100 | Plus |
| CG43427-RI | 3810 | CG43427-RI | 281..2762 | 17..2498 | 12410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4707086..4708108 | 17..1039 | 5115 | 100 | Plus |
| 3R | 32079331 | 3R | 4709159..4710070 | 1411..2322 | 4560 | 100 | Plus |
| 3R | 32079331 | 3R | 4708674..4709049 | 1036..1411 | 1880 | 100 | Plus |
| 3R | 32079331 | 3R | 4710176..4710352 | 2322..2498 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 4710614..4710680 | 2497..2563 | 335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6823 | 1574..1657 | 168 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1070..1154 | 358..444 | 158 | 71.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1175 | 307..415 | 146 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6843 | 1574..1656 | 145 | 63.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1067..1149 | 1574..1656 | 127 | 61.4 | Plus |
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 7205..7320 | 654..767 | 125 | 57.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2422 | 1574..1656 | 118 | 60.2 | Plus |
BO28569.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 15:54:00 Download gff for
BO28569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31534-RB | 281..2827 | 17..2565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:41:42 Download gff for
BO28569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43427-RH | 2546..5092 | 17..2565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:04 Download gff for
BO28569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43427-RH | 2546..5092 | 17..2565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:04 Download gff for
BO28569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4707086..4708106 | 17..1037 | 100 | -> | Plus |
| 3R | 4708676..4709049 | 1038..1411 | 100 | -> | Plus |
| 3R | 4709160..4710070 | 1412..2322 | 100 | -> | Plus |
| 3R | 4710177..4710352 | 2323..2498 | 100 | -> | Plus |
| 3R | 4710616..4710680 | 2499..2565 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:41:42 Download gff for
BO28569.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 532808..533828 | 17..1037 | 100 | -> | Plus |
| arm_3R | 534398..534771 | 1038..1411 | 100 | -> | Plus |
| arm_3R | 534882..535792 | 1412..2322 | 100 | -> | Plus |
| arm_3R | 535899..536074 | 2323..2498 | 100 | -> | Plus |
| arm_3R | 536338..536402 | 2499..2565 | 97 | | Plus |
BO28569.pep Sequence
Translation from 16 to 2581
> BO28569.pep
MDKAQHPQKREQKEELGGKPEEKEPICEEQHDEESNEQGETHNEGGEMPN
KTDKQMQGGREPIYENVSSTISMHEVDNEQIATMTITTQTQATRISHRRS
IPSQQTSNSNENNQSTNQTSNSRNQKESSTAATSAANPVPPTTPGEQAEP
YYQVPKATEPYYDAPKHLRPVPVYENVEIFYSGLEISQGSVGAPVGLMEP
PKEKPPPPPTESPIPLDEGHDDELDGLGNSLGHNTDTWSSDNTYETISNG
TRRHLQGQPEPAQPSPPIKRMNSTKRIKKELRNKRSSFLGIENDGDLDDM
ETYLELTVAPPPDMAQLLQEERRLEKQLYIKAGLCDSSDTGESRDSGVSE
NHSRQSSEHYTNSSEENDTQSEATPPPLPPPPSTAQVGEVIYQNESLLAA
QTPLLQTVKGNSAESWTESATAAAAATQSLSEATATANAKMQSIEDKIRE
QGEMLRVERELLHFSQEELKRQRENLVLRENIARRELQHGAKMLMSNNRR
SLQDLHHGLGIGNGMLSAFQPPQHHQVQMPPPHPQQIYANVPQQQQQMVL
HAYHQMDTDYRKSMSDLNEFSNCLILPPTPPTKPLRAMQLNANGHGLEPD
YAVSTRQRQPPAPYGGSLVKIAGAPMPPRLPGQGYPIQAPTAPAYHHQSA
QNLSNMSRNTLLALSATPKPKYADGWVQVQQRKSYDSQQTSDAAWLAAQQ
QKRKSMPDYGGALYNNNHWLLQEAEQRRIEQLNRRSIPASKSMGKPLPDS
IIQTLTERVQSKGIGDRKRFDSNGNYSQVNGNNIYQQQQQQKNVTNGSSI
NGNSSQGQEKVLSVSGKKKCSHCGDELDLGCTHGNCRQVHKALKYIVWVA
SFLDH
BO28569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43427-PJ | 849 | CG43427-PJ | 1..849 | 1..849 | 4475 | 100 | Plus |
| CG43427-PH | 1493 | CG43427-PH | 645..1493 | 1..849 | 4475 | 100 | Plus |
| CG43427-PP | 1501 | CG43427-PP | 645..1501 | 1..849 | 4449 | 98.9 | Plus |
| CG43427-PO | 1541 | CG43427-PO | 645..1481 | 1..837 | 4359 | 99.2 | Plus |
| CG43427-PI | 889 | CG43427-PI | 1..830 | 1..830 | 4349 | 99.8 | Plus |
