BO28578.complete Sequence
1360 bp assembled on 2011-07-13
GenBank Submission: KX799078
> BO28578.complete
GAAGTTATCAGTCGACATGCTTAATGCGCGTGACGTGTGTCCTGAGGGCA
ACGACGACCAGCAGTTGGACCACAATTTTAAGCAGATGGAGGAGCATTTG
GCCTTAATGGTGGAAGGCAATGAAAACGAAGATCCGAGGAAAGCCACTTG
TGAGTACGAGGATACGAACGAAGATGGTGCAACCTGCACATCGGGCGTTT
TATCCGAAATCCAGGAGAACTTCGGTAGACTCCGGTTGTGTGACGTTACT
GCACCACTCCTCGAATTCCACGGTTTGGATTGCTTGCAACAGATTCAAAA
GCGCTCGCGCCATTTTGCATTCGACGGTTCTCCGGCCAAGAAGTCGCGAT
CCGGAGGCGTGTTGGTCACCGGGCCAAAGCAGAAGCAACTGCAGAAGGAA
AATGTGTGGAACCGGAAGAGTAAAGGCTCTGCGTCCGCGGATAATATTGA
GAAACTGCCCATAACTATTGAGAAACTGCATATGATTGGTCTGCACGGCG
ATTGCTTAGAGCACAACGCCGTGCTGCGTTTGATGAATCTGTTCAGATCC
CTGCATGATCACCTGACCGCCGATTTGGGCTTCTCGCGCCAAAACTCAAT
GCCCTCGGACTATCTGTTCGATATGCCGGTGAAGAGCACGATGCCTAAGA
GCTTGAATGTGCGCTACCAACTGCAGGTGCTGTGCACCAAAGTAGAGCGC
TTCCTTGTCCAGCAGCGCCGCACCTTGGAGGCGAATCGCCACTTCGATTT
CGAGAAATACGACGAGTGTGACAAGTTGCTTAAGGGTTTCGCATCCTATT
TGGACAACTTCAAACTGCTTTTAAAGCCCAAAATGCGCAATCGAAACGGA
AACTCGGGGAGCAATGCGGACAAGTTCCATACTCAGCGCATGGAGAGATT
GCTAATTGGTCTGCGCGATTGGATCAAGGCTGCGCATCTCAGTGTGCACG
TATTTAACTGGGAAATGGATCTGGAGCACCGCTACTCCGGGGCCATGACC
GAAAGCCACAAGTCGTTGAACGAGCGGGCCATCCTTTTGTCCGGTGCCGA
GCTAAGGGCGGCCGAAGCGCGTGGAATCAGTGCGGAGGATCTGTTCATCG
CCCAGAGATACAAACTGGGAGGTCCGATCTATTGCGTTCTGGAGCAGCAT
GAGTTCCTCTCCGCTCTGATCGCCAATCCAGAGACCTATTTCCCGCCCAG
TGTTGTCGCCATTTGCGGGCCACAGAAGCTTGGCGCAGTGAGCATGGAGC
AGCCGTCAGCGTCGGAGGAGGAGTTTGAGGAGACCGAGGAAGTGCCATCA
TCGCCACCTCGTCACACCGGACGTGTACCTCGCTTCAGAAGCGCAAGCTT
TCTAGACCAT
BO28578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bam-RA | 1329 | CG10422-PA | 1..1326 | 17..1342 | 6615 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bam-RA | 1894 | CG10422-RA | 82..1407 | 17..1342 | 6615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25244489..25244976 | 504..17 | 2425 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25243526..25243992 | 1342..876 | 2335 | 100 | Minus |
| 3R | 32079331 | 3R | 25244054..25244425 | 875..504 | 1860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:52:48 has no hits.
BO28578.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:14 Download gff for
BO28578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bam-RA | 187..1512 | 17..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:05 Download gff for
BO28578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bam-RA | 82..1407 | 17..1344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:36 Download gff for
BO28578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bam-RA | 82..1407 | 17..1344 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:36 Download gff for
BO28578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25243524..25243992 | 876..1344 | 99 | <- | Minus |
| 3R | 25244054..25244424 | 505..875 | 100 | <- | Minus |
| 3R | 25244489..25244976 | 17..504 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:05 Download gff for
BO28578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21069246..21069714 | 876..1344 | 99 | <- | Minus |
| arm_3R | 21069776..21070146 | 505..875 | 100 | <- | Minus |
| arm_3R | 21070211..21070698 | 17..504 | 99 | | Minus |
BO28578.pep Sequence
Translation from 16 to 1360
> BO28578.pep
MLNARDVCPEGNDDQQLDHNFKQMEEHLALMVEGNENEDPRKATCEYEDT
NEDGATCTSGVLSEIQENFGRLRLCDVTAPLLEFHGLDCLQQIQKRSRHF
AFDGSPAKKSRSGGVLVTGPKQKQLQKENVWNRKSKGSASADNIEKLPIT
IEKLHMIGLHGDCLEHNAVLRLMNLFRSLHDHLTADLGFSRQNSMPSDYL
FDMPVKSTMPKSLNVRYQLQVLCTKVERFLVQQRRTLEANRHFDFEKYDE
CDKLLKGFASYLDNFKLLLKPKMRNRNGNSGSNADKFHTQRMERLLIGLR
DWIKAAHLSVHVFNWEMDLEHRYSGAMTESHKSLNERAILLSGAELRAAE
ARGISAEDLFIAQRYKLGGPIYCVLEQHEFLSALIANPETYFPPSVVAIC
GPQKLGAVSMEQPSASEEEFEETEEVPSSPPRHTGRVPRFRSASFLDH
BO28578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bam-PA | 442 | CG10422-PA | 1..442 | 1..442 | 2324 | 100 | Plus |
