BO28579.complete Sequence
3034 bp assembled on 2011-08-04
GenBank Submission: KX799233
> BO28579.complete
GAAGTTATCAGTCGACATGGAGGTGTTCCAGACCGACTCGCACTATATCT
TCGTGAAGCGGGACAAGAGTTTGTGGTGGCACCGAAGGACGTCTGAGTTC
TCCATAAAAGCAGGATGGGATCTCAGTTCTGTGGACGACATAGAATGCAT
TGGCGTGACACACGGAATTGTTGGTGTAATCTCACTGCCCAATGTCTATG
AACCCCATTTAGTTGTGGTAAAGGAGGCTTCGGCAGTGGGCGTTCTATAT
CCACCACACTTGGTGTACAAAATCAAGTCGATATGCATTCTGAGTGCCGA
CGATCCGGACACCGATTTGCCCAATTGCACCAAGCACACCAAGAGCAACC
AGTCCACGCCCACCCACAGCGTCTCCACCTCCAACAACAACAATGCCAGC
GTTCCGTCGAGCGGCGGAGGCTCCTCAAAGAGCACCAAACTATTCGAAGG
CATGAACAAGACGTGGGGCGCCGTAAAGAGTGCAGGCAACACTATTAAGA
ATACTACCCAGCAAGCTGCGAATTTGGCCACCAAGCAGGTTAAGTCATCT
GTGGGCATTCGGGAGCCCAGGCATATTGAACGCCGCATAACGGAGGAATT
ACACAAGATATTCGACGAGACGGACAGCTTTTATTTCAGCTTCGACTGCG
ATATCACCAACAATCTGCAGCGCCATGAGGCCAAATCGGAGGAAAGTCAG
TCTCAGCCGGATGAGAGATTCTTTTGGAACAAGCATATGATAAGAGATTT
GATTAACTTGAATGACAAAACTTGGATACTCCCCATCATTCAGGGATTCA
TGCAAGTTGAAAATTGTGTCATAGGCAATGAATGCTTCACCTTGGCCTTG
GTTTCGCGAAGATCGCGTCATCGTGCGGGAACACGCTACAAGAGACGGGG
CGTAGACGAAAAGGGAAACTGTGCCAATTACGTAGAAACGGAACAAATAC
TCTCATTCCGTCATCACCAGCTTTCCTTCACCCAAGTGCGTGGATCTGTG
CCTATCTACTGGAGCCAGCCGGGCTACAAGTATCGCCCACCACCACGCCT
CGATCGAGGGGTTGCCGAGACCCAACAGGCCTTTGAACTGCACTTTACCA
AGGAACTGGAGACCTATGGGCGGGTGTGCATCGTCAATTTGGTTGAGCAG
AGCGGAAAGGAGAAGACAATTGGAGATGCTTATGCAGATCACGTGATTAA
GTTGAACAACGACCGATTGATATATGTAACCTTTGACTTTCACGATTACT
GCCGCGGCATGCGCTTCGAGAATGTGTCGGCTCTAATCGACGCAGTAGGC
CCTGAGGCAGGTGCAATGGGCTTCCACTGGCGGGATCAACGTGGAATGAT
ATGCAACCAAAAATCCGTGTTTAGGGTAAATTGCATGGACTGCCTAGATA
GAACGAATGTGGTGCAAACGGCTATTGGCAAGGCTGTACTCGAATCTCAG
CTAGTGAAACTGGGCCTCTCGCCGCCTTATACTCCCATTCCGGAGCAGCT
GAAATCTCCGTTTATGGTGCTATGGGCAAACAATGGCGACATAATAAGTA
GGCAGTATGCAGGCACAAATGCATTAAAGGGAGACTATACTCGCACCGGT
GAGCGCAAAATCAGCGGTATGATGAAAGACGGCATGAACTCCGCCAATCG
TTATTATTTGGCGCGATTTAAGGACTCGTATCGACAGGCCACCATAGATT
TGATGCTAGGCAACCAGGTCTCCTCGGAGTCACTCAGTGCTTTGGGCGGA
CAAGCTGGCCCAGATGAAAATGACGGAACGGAAAATGCCGAGCAAGCCAA
GTTGCTAGTGGAAGATTGTCGTCGCCTGCTGCTGGGAACTGCTCAGTATC
CTGTTGGAGCTTGGGGACTAATAGATGCTGACCCAAGCTCCGGCGATATC
AACGAAACAGAGGTAGATACTATTTTGTTGCTCACAGACGATTGCTATAT
TGTTGCCGAATACGACTCACATCTGGACAAGATTGTGCGCTTTGAGAAGG
TGCAACTGACGCAGGTGCGTCTCATAGAGTTGGGCATGCATCAGCAGACG
AAAATTTTTCAGGGATCCGCTCCAGCGCATCTTTGTCTGCGTCTGAACTA
CAGTGTAGACGAGCAAGAGGGCTACTTTCACATGTTTCGCTCGGCCAATC
TAAGATTCTTTAACAACATGGCCTATGTGATCAAGACGCAGGAGGAGGTA
GCCGAGTCCATGACTTCAATTGTCGAGATGTTCCGCATTGCCCTGGATAA
TGCAGGGAATACAGAAGTACGATACATTACGGGTGGGGTGCTGCAGCGAA
GAAAGAGCAAGTTGCCCACTTTGGATGTTCCAAGAGGCATGCCACGCAAC
CTTTCCGAATCTCAGCTGGTACAGTTAAGCTCAAAGGCACTTTCAAATAT
GGCGGGACAGTTCTCGAAATTGGGACAGACCTTCAAAAAGCCGCAAGCCC
ATCCCAGCAGCCTGGCAGCTACTATGAATCCACAAGTAATGCGTCAGAGA
GACAGCGAAATAGAATCTGGCCAGGAAGCGGAAAAGGCAGTTTTCACACT
GGGTCGCAAGCATCGAAATTCCAACAGCGCAAGCAGCACCGATACCGATG
AGCATGACAACAGTTTGTACGAGCCCGAGGTGGACTCGGATGTGGAGATA
GCTATGGACAAGTCCAACTACAACGAGAACGCCTTTCTGCCGTCGGTGGG
TATTGTAATGGGTAATCAGAAGGAGGACTCGCCTAGCTCCTCCGATGAAA
TTCGACATTTGGAGCAGAAGGATAGCATGTGCAAAACCACAGAGGATGTG
CTAACCATTTCCATAACCTCCGTGACGGACCACGTTGGTCTGCCCACGGG
CCTTCTGGAAAATGCACCGGCCATCCGACCGATTACGCCAAATCCGTTGA
TCTGTGTGGAAGCTCACGAAGCATTTGATGACAGGGAGGAGGGGGTGAAG
CCTGTGTCCAGTGCCTGCTCCATACCACATACACTCAGGCTGTTTCTGGC
CAAAAATCGCTCAAAAGCAAGCTTTCTAGACCAT
BO28579.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7956-RA | 3003 | CG7956-PA | 1..3000 | 17..3016 | 15000 | 100 | Plus |
| CG7956-RD | 3213 | CG7956-PD | 1..2946 | 17..2962 | 14730 | 100 | Plus |
| CG7956-RG | 2964 | CG7956-PG | 1..2945 | 17..2961 | 14725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7956-RA | 3543 | CG7956-RA | 128..3128 | 16..3016 | 15005 | 100 | Plus |
| CG7956-RD | 4343 | CG7956-RD | 128..3074 | 16..2962 | 14735 | 100 | Plus |
| CG7956-RG | 3796 | CG7956-RG | 128..3073 | 16..2961 | 14730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21525827..21526902 | 1886..2961 | 5380 | 100 | Plus |
| 3R | 32079331 | 3R | 21523083..21523509 | 338..764 | 2120 | 99.8 | Plus |
| 3R | 32079331 | 3R | 21523751..21524117 | 885..1251 | 1835 | 100 | Plus |
| 3R | 32079331 | 3R | 21524187..21524516 | 1251..1580 | 1650 | 100 | Plus |
| 3R | 32079331 | 3R | 21525526..21525763 | 1650..1887 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 21522801..21523033 | 111..343 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 21523567..21523688 | 764..885 | 610 | 100 | Plus |
| 3R | 32079331 | 3R | 21521055..21521153 | 16..114 | 495 | 100 | Plus |
| 3R | 32079331 | 3R | 21524566..21524649 | 1567..1650 | 375 | 96.4 | Plus |
| 3R | 32079331 | 3R | 21527153..21527210 | 2959..3016 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:08:42 has no hits.
BO28579.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 17:43:42 Download gff for
BO28579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7956-RA | 116..3111 | 17..3012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:14 Download gff for
BO28579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7956-RA | 129..3124 | 17..3012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:26 Download gff for
BO28579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7956-RA | 129..3124 | 17..3012 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:26 Download gff for
BO28579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21524188..21524519 | 1252..1583 | 99 | -> | Plus |
| 3R | 21524583..21524649 | 1584..1650 | 100 | -> | Plus |
| 3R | 21525527..21525763 | 1651..1887 | 100 | -> | Plus |
| 3R | 21522804..21523032 | 114..342 | 100 | -> | Plus |
| 3R | 21521056..21521152 | 17..113 | 100 | -> | Plus |
| 3R | 21523088..21523508 | 343..763 | 100 | -> | Plus |
| 3R | 21523567..21523688 | 764..885 | 100 | -> | Plus |
| 3R | 21523752..21524117 | 886..1251 | 100 | -> | Plus |
| 3R | 21525829..21526902 | 1888..2961 | 100 | -> | Plus |
| 3R | 21527156..21527206 | 2962..3012 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:14 Download gff for
BO28579.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17346778..17346874 | 17..113 | 100 | -> | Plus |
| arm_3R | 17348526..17348754 | 114..342 | 100 | -> | Plus |
| arm_3R | 17348810..17349230 | 343..763 | 100 | -> | Plus |
| arm_3R | 17349289..17349410 | 764..885 | 100 | -> | Plus |
| arm_3R | 17349474..17349839 | 886..1251 | 100 | -> | Plus |
| arm_3R | 17349910..17350241 | 1252..1583 | 99 | -> | Plus |
| arm_3R | 17350305..17350371 | 1584..1650 | 100 | -> | Plus |
| arm_3R | 17351249..17351485 | 1651..1887 | 100 | -> | Plus |
| arm_3R | 17351551..17352624 | 1888..2961 | 100 | -> | Plus |
| arm_3R | 17352878..17352928 | 2962..3012 | 100 | | Plus |
BO28579.pep Sequence
Translation from 16 to 3034
> BO28579.pep
MEVFQTDSHYIFVKRDKSLWWHRRTSEFSIKAGWDLSSVDDIECIGVTHG
IVGVISLPNVYEPHLVVVKEASAVGVLYPPHLVYKIKSICILSADDPDTD
LPNCTKHTKSNQSTPTHSVSTSNNNNASVPSSGGGSSKSTKLFEGMNKTW
GAVKSAGNTIKNTTQQAANLATKQVKSSVGIREPRHIERRITEELHKIFD
ETDSFYFSFDCDITNNLQRHEAKSEESQSQPDERFFWNKHMIRDLINLND
KTWILPIIQGFMQVENCVIGNECFTLALVSRRSRHRAGTRYKRRGVDEKG
NCANYVETEQILSFRHHQLSFTQVRGSVPIYWSQPGYKYRPPPRLDRGVA
ETQQAFELHFTKELETYGRVCIVNLVEQSGKEKTIGDAYADHVIKLNNDR
LIYVTFDFHDYCRGMRFENVSALIDAVGPEAGAMGFHWRDQRGMICNQKS
VFRVNCMDCLDRTNVVQTAIGKAVLESQLVKLGLSPPYTPIPEQLKSPFM
VLWANNGDIISRQYAGTNALKGDYTRTGERKISGMMKDGMNSANRYYLAR
FKDSYRQATIDLMLGNQVSSESLSALGGQAGPDENDGTENAEQAKLLVED
CRRLLLGTAQYPVGAWGLIDADPSSGDINETEVDTILLLTDDCYIVAEYD
SHLDKIVRFEKVQLTQVRLIELGMHQQTKIFQGSAPAHLCLRLNYSVDEQ
EGYFHMFRSANLRFFNNMAYVIKTQEEVAESMTSIVEMFRIALDNAGNTE
VRYITGGVLQRRKSKLPTLDVPRGMPRNLSESQLVQLSSKALSNMAGQFS
KLGQTFKKPQAHPSSLAATMNPQVMRQRDSEIESGQEAEKAVFTLGRKHR
NSNSASSTDTDEHDNSLYEPEVDSDVEIAMDKSNYNENAFLPSVGIVMGN
QKEDSPSSSDEIRHLEQKDSMCKTTEDVLTISITSVTDHVGLPTGLLENA
PAIRPITPNPLICVEAHEAFDDREEGVKPVSSACSIPHTLRLFLAKNRSK
ASFLDH
BO28579.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7956-PA | 1000 | CG7956-PA | 1..1000 | 1..1000 | 5223 | 100 | Plus |
| CG7956-PD | 1070 | CG7956-PD | 1..982 | 1..982 | 5130 | 100 | Plus |
| CG7956-PG | 987 | CG7956-PG | 1..981 | 1..981 | 5126 | 100 | Plus |
| CG7956-PF | 1142 | CG7956-PF | 1..573 | 1..573 | 2964 | 97.2 | Plus |
| CG7956-PE | 662 | CG7956-PE | 1..573 | 1..573 | 2964 | 97.2 | Plus |
| CG7956-PF | 1142 | CG7956-PF | 618..1054 | 546..982 | 2231 | 100 | Plus |
