BO28584.complete Sequence
1858 bp assembled on 2011-10-14
GenBank Submission: KX799294
> BO28584.complete
GAAGTTATCAGTCGACATGTTGAATGGACAGATTGCACACAGTTATTTGG
AGAACTCGTGCACGCTGATCATACCCCGCCCGCCTGTCCTGAATCAGTCC
TCAAAGTCGGCCCAGCCAGCAGCAGCAGCTGCTGCTTCTTCTTCCGCTGG
TGAGGAGTTTGGTCAGGAAGCGGGGTCGGGGTTGGCGGAAGCGGAGGCGT
TGCATGTGGATCGCATAAGAAACTGCGATATATTCGTTGACGCGCACGAT
CTTTATTTCTACGCAGATGTTAAGCTGTACAAATTCCACAGCCGTCGCAC
CTTCGACTTGCGAGAGCTGAAGACGCTGTTGATAAAGTTCAACACGACAG
AGAATCACTACCAAATTTGCCTGCGCTGTCTGCCCCTAACAGCGGGTGCC
CAGGAAGGACCCGGTGGAGAAAGAGGCGGAGGCGGTGGTACGGGGGATGC
AGCCAAGCAGTGGAATAGTCGCAAAGAGTACATAGCCGCATTCCTGCACC
TACCCACACTGAGTGCCAATTTGCCGGACAAGCAGCCTCTGGTGCAGGAA
TGGAAACTCAAACGAATCACCGATCAGTGCCAATTGCAGCTCGACGACCA
CGAGCGCACCTACAAGCTGACCAACAATTTTGGGTACGGCTATGCTAGCG
AATACAGCGGACCGCTAGACCTGAGTGAGTTGGACAGAGCCACGTGCCGC
GTGTCGGAGCCACATCGCATGAGCCCCATCCAAAGGCGGCAAGAGCGCGT
GGTCGATGAGATGAAGCGCTTTTCCCGCGAGCAGTACAAAATAAATTTTG
TGGAGCTACAGGTTCCGTCCGGTCACCAGAATCCTTTACGCTACAAACCG
AAAATCTACGAGACTTCCATGACCCAGGAACAAGCGCATCTGCTGCACAA
CATCAGCCGAATGCAGACACGGGAGCAGCAGCCGTGCGACGTTTTTCGGC
AAAACGAGATCGATTGCGGGCTGATAAGCATTCTGTTGGCCATATGCTAT
GATGTGCGGACGACGAACAATGAGCCGACGTGTGAATCGGGCTGGACGCG
AAGCATACTGTGCCCGCTTTATTGCTACTTTGAGCAATTCGACAACTATC
GGGACGTACTGGTTGCCTTCCTGCGGCGAATGATCACCTACCCGCTGTAC
CGCAATTTCGAGTTGGGCCGCCAATGTGTACGGGATGCCATAGAAGTTTT
AAAGGGCGGTCGCAACTGGTTAATTAATCAGCTGCTGCTAACGCACCAGC
AGTTCGCCAGCAGTGATCCCAGTCGCGATAGCTTCAACAACTACTATTTG
GAGGACTATATACGATATGTGACCAGCCCGAGCGCCTGCAGTGATGAGCA
CATGCGCCTTCTTGCCCGCAACCTTAAGAACGTGCTGATGGACGTAAACA
AGCAACACTTGGGCCTGGGAGTGACCGAGATTGAGACTGAGCTGATCAAG
GAGCTGATGCAGGAGATGCGCATCGATGCGGGAAGCCAGGGTTCCTCGCC
GCAGCAGCAGCATGGCGATGATGACTTGGACCTTGATAACGATACTTCTG
GACAGGAGGACGAGACTACCACTGATGATGAAAGCGTCATAACTGACTCC
TTCTACAGCGTGGACATGGACATGCGACTGATAGAGAACGAAATTGTATA
TGAGGATGACGAGGAGGACGAAGATGACGATGAAGATGGAGATGATGATG
AAGATGGGGATGGGGATGAGGATGAGGATGAGGATGAAGACGAAGACGAC
AGCAGTTCTTCCACAACCACCAGTAGCGAGGCGGAGGGAAACAGCGTCAT
CGAGCAGTGCAGCAACAGTGAGACAGCAGCCAGCACCACAGCAAGCTTTC
TAGACCAT
BO28584.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10055-RA | 1827 | CG10055-PA | 1..1824 | 17..1840 | 9090 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10055-RA | 2422 | CG10055-RA | 103..1926 | 17..1840 | 9090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7184597..7185759 | 1840..678 | 5800 | 99.9 | Minus |
| 3R | 32079331 | 3R | 7185814..7186214 | 679..279 | 1990 | 99.8 | Minus |
| 3R | 32079331 | 3R | 7186306..7186571 | 282..17 | 1315 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:40:40 has no hits.
BO28584.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:05 Download gff for
BO28584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10055-RA | 88..1906 | 22..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:26 Download gff for
BO28584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10055-RA | 108..1926 | 22..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:21 Download gff for
BO28584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10055-RA | 108..1926 | 22..1842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:21 Download gff for
BO28584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7184595..7185757 | 680..1842 | 99 | <- | Minus |
| 3R | 7185814..7186210 | 283..679 | 100 | <- | Minus |
| 3R | 7186306..7186566 | 22..282 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:26 Download gff for
BO28584.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3010317..3011479 | 680..1842 | 99 | <- | Minus |
| arm_3R | 3011536..3011932 | 283..679 | 100 | <- | Minus |
| arm_3R | 3012028..3012288 | 22..282 | 99 | | Minus |
BO28584.pep Sequence
Translation from 16 to 1858
> BO28584.pep
MLNGQIAHSYLENSCTLIIPRPPVLNQSSKSAQPAAAAAASSSAGEEFGQ
EAGSGLAEAEALHVDRIRNCDIFVDAHDLYFYADVKLYKFHSRRTFDLRE
LKTLLIKFNTTENHYQICLRCLPLTAGAQEGPGGERGGGGGTGDAAKQWN
SRKEYIAAFLHLPTLSANLPDKQPLVQEWKLKRITDQCQLQLDDHERTYK
LTNNFGYGYASEYSGPLDLSELDRATCRVSEPHRMSPIQRRQERVVDEMK
RFSREQYKINFVELQVPSGHQNPLRYKPKIYETSMTQEQAHLLHNISRMQ
TREQQPCDVFRQNEIDCGLISILLAICYDVRTTNNEPTCESGWTRSILCP
LYCYFEQFDNYRDVLVAFLRRMITYPLYRNFELGRQCVRDAIEVLKGGRN
WLINQLLLTHQQFASSDPSRDSFNNYYLEDYIRYVTSPSACSDEHMRLLA
RNLKNVLMDVNKQHLGLGVTEIETELIKELMQEMRIDAGSQGSSPQQQHG
DDDLDLDNDTSGQEDETTTDDESVITDSFYSVDMDMRLIENEIVYEDDEE
DEDDDEDGDDDEDGDGDEDEDEDEDEDDSSSSTTTSSEAEGNSVIEQCSN
SETAASTTASFLDH
BO28584.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10055-PA | 608 | CG10055-PA | 1..608 | 1..608 | 3208 | 100 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 754..846 | 501..592 | 161 | 37.6 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 754..846 | 501..592 | 161 | 37.6 | Plus |
