BO28585.complete Sequence
1744 bp assembled on 2011-07-13
GenBank Submission: KX799551
> BO28585.complete
GAAGTTATCAGTCGACATGACTCAATCCACGGAGAATCCGGAGAAGAATC
GCGAGCTGATCAGCGAGGAAAGCATGAAGGATCTGCTCACCAAGCAGCTG
GAAGTCGTTGGCAGTGGCGGGGCATTTGTGTGGGCGATCTTCTTCCTGTG
TGTCACTCCCAATATACTGAACGGATTCCATGTGTCATCCTATACGCTGC
TGGGCCACCTACCCGATGACCAGTGGTGCGGCATTCCGGAGCTGCAGGAC
ACCAACTGGACACACGCCCAGAAGCGGGAGATTGTCGCCAAGGGATTGGA
TTCGGGCGGTTGCACCGTGTGGGACTGGAACTATGGCCACCTGGCCAAGA
TGTCCTACGAGGCAGCCCTGAACTATACCGGCCATCTGACGCAGATTTCC
CCGCCGGCTGAGGTATCCTGCCGTGTAAAGGGGCAACATGAGTTCGCCCA
TCCCGAGACCACCTTCGTTGCGGACTGGGATCTCACCTGCGACCGGAGCA
TCCAGCGTACCTCCGCCCAGGTTTCCATATCGTTGGGCAAGTTCTGCGGA
TCCTTCTCCTTTGGCATCCTGGCCGACAAATTTGGTCGCAAATCCTCATT
CACCCTGGGCGCTGCCTTCTTTATTGTGGGCAGCTTCTTCTGTACCTTCT
CGCCCTGGTACAGCCTCTTCCTGGCCGGACGTTTCGCCCTAGGAGCAGCC
TCCTCTGGTCTGTTCTATCCAGCATTTACCATGATCGTGGAGAACATCTG
CTTGAAGCATCGTTCCTGGATGTCCATTGCCTTCTCAGCGTCCTATCCGG
TGGGCATGATCATCCTGGCCATTGTGGGCTACGTCATCCAACCGTGGAGA
CATCTGCAACTGGCTCTCACCATTCCTTCGCTGCTGCTCATTCTGAACTG
CTACCTGATGAGTGAGTCACCCCGCTGGCTGATCACGAACCAAAGATATG
ATCGCGTCTACAAGATTCTCTTCAGACAGCCCAGCCATTACCAAATTCAG
CCCGCCGTTGCAGCCCCATCTCAAGTCGCCAGCGATAAGAAGTCGCTGGA
GCCCGAAGAGGGATTCTCCTTTGGACAGAAACTCAAGAATGGTCCCCTGA
AGTCCATCATCGAGCTGTATGCCAACTCCAAGGTGCGCAGGATGATCTTT
GCCTCGTATTTCATGTTCTGTGTCACTTCGCTGAGTTACTATGTGACGGC
TCTCAATGCCGCCAATTTGTCGGTGTCCAGATACCTATACATTATAGGCA
CCGGTCTGGTGGATATACCCTCCTATCTCGTCCCTGTGATAATGCTGCGC
TTTACGGGCCGTCGCCTCACCACCATGTTCCTGTTCCTGTGGACCGGCGT
GTCCTTGCTGCTTGTCCTTGCTGTTCCCGCCGGCAGCACCACCTGGATCG
TGGCCTTCGCCATGCTGGGTCGCTTTGGTATTAGCGCCACCTACTCCGTG
GTCACGCTCTACACAGCCGAGCTGTATCCCACCCAGATAAGAAACTCGGC
TTTGGGAACCTGCTCCACCTTCGCCCATGTGGGCTCCATTTCGGCACCGT
ATGTGGTCGATGTCCTTGGAGCTCTGGGCTGGTACATTCCAACAACGATT
TGCGGCTGCTGCGTTCTAGTAGCTGGCCTACTGACTCTCACACTTCCGGA
AACGGGAACGGGTAAGCTGTCCGACAAAGTGGAGAGCAGTGCGTCCTCCA
CTCCGACGGAGCCGGCCGAGAAACAGGCAAGCTTTCTAGACCAT
BO28585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6356-RA | 1713 | CG6356-PA | 1..1710 | 17..1726 | 8550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6356-RA | 2887 | CG6356-RA | 774..2484 | 16..1726 | 8555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24287687..24288214 | 1199..1726 | 2640 | 100 | Plus |
| 3R | 32079331 | 3R | 24286280..24286727 | 132..579 | 2240 | 100 | Plus |
| 3R | 32079331 | 3R | 24287004..24287172 | 735..903 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 24286792..24286946 | 580..734 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 24287474..24287628 | 1045..1199 | 775 | 100 | Plus |
| 3R | 32079331 | 3R | 24287235..24287376 | 904..1045 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 24284728..24284845 | 16..133 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:34:08 has no hits.
BO28585.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 13:10:09 Download gff for
BO28585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6356-RA | 596..2305 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:23 Download gff for
BO28585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6356-RA | 775..2484 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:39 Download gff for
BO28585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6356-RA | 775..2484 | 17..1728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:39 Download gff for
BO28585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24284729..24284844 | 17..132 | 100 | -> | Plus |
| 3R | 24286281..24286727 | 133..579 | 100 | -> | Plus |
| 3R | 24286792..24286946 | 580..734 | 100 | -> | Plus |
| 3R | 24287004..24287172 | 735..903 | 100 | -> | Plus |
| 3R | 24287235..24287376 | 904..1045 | 100 | -> | Plus |
| 3R | 24287475..24287628 | 1046..1199 | 100 | -> | Plus |
| 3R | 24287688..24288214 | 1200..1728 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:23 Download gff for
BO28585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20113197..20113350 | 1046..1199 | 100 | -> | Plus |
| arm_3R | 20110451..20110566 | 17..132 | 100 | -> | Plus |
| arm_3R | 20112003..20112449 | 133..579 | 100 | -> | Plus |
| arm_3R | 20112514..20112668 | 580..734 | 100 | -> | Plus |
| arm_3R | 20112726..20112894 | 735..903 | 100 | -> | Plus |
| arm_3R | 20112957..20113098 | 904..1045 | 100 | -> | Plus |
| arm_3R | 20113410..20113936 | 1200..1728 | 99 | | Plus |
BO28585.pep Sequence
Translation from 16 to 1744
> BO28585.pep
MTQSTENPEKNRELISEESMKDLLTKQLEVVGSGGAFVWAIFFLCVTPNI
LNGFHVSSYTLLGHLPDDQWCGIPELQDTNWTHAQKREIVAKGLDSGGCT
VWDWNYGHLAKMSYEAALNYTGHLTQISPPAEVSCRVKGQHEFAHPETTF
VADWDLTCDRSIQRTSAQVSISLGKFCGSFSFGILADKFGRKSSFTLGAA
FFIVGSFFCTFSPWYSLFLAGRFALGAASSGLFYPAFTMIVENICLKHRS
WMSIAFSASYPVGMIILAIVGYVIQPWRHLQLALTIPSLLLILNCYLMSE
SPRWLITNQRYDRVYKILFRQPSHYQIQPAVAAPSQVASDKKSLEPEEGF
SFGQKLKNGPLKSIIELYANSKVRRMIFASYFMFCVTSLSYYVTALNAAN
LSVSRYLYIIGTGLVDIPSYLVPVIMLRFTGRRLTTMFLFLWTGVSLLLV
LAVPAGSTTWIVAFAMLGRFGISATYSVVTLYTAELYPTQIRNSALGTCS
TFAHVGSISAPYVVDVLGALGWYIPTTICGCCVLVAGLLTLTLPETGTGK
LSDKVESSASSTPTEPAEKQASFLDH
BO28585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6356-PA | 570 | CG6356-PA | 1..570 | 1..570 | 2984 | 100 | Plus |
| Orct-PB | 548 | CG6331-PB | 10..533 | 31..569 | 553 | 27.2 | Plus |
| Orct-PA | 548 | CG6331-PA | 10..533 | 31..569 | 553 | 27.2 | Plus |
| Orct2-PB | 567 | CG13610-PB | 10..512 | 31..546 | 541 | 28.4 | Plus |
| Orct2-PA | 567 | CG13610-PA | 10..512 | 31..546 | 541 | 28.4 | Plus |
