BO28587.complete Sequence
2077 bp assembled on 2011-10-14
GenBank Submission: KX799475
> BO28587.complete
GAAGTTATCAGTCGACATGGATCGCAAAGAAACTGTTTCGAAGGACCAAG
CGGTACGTCGAATTGCCCATAATGACTTTATATTAGTCTCACGTCAATTG
CTGATCAATCGAGCCGACACGGATCCGGACAAAGGAAGTGCCAGGATGTT
GATTATCTACAGCAGTGGAAAGCAGCACATCGTCACCTTCAAGCTGCCCA
ATCTTGCGTGTAGAGTGCAGGATCTGTTTTTCCAAATGGATCTTCAGATC
GATGAGAGCACCACGATTGATTGCATTGAGAATGCCGGCGGTATTATCCA
TTTGGTTGTCTCTGTGGGCTTCCCCATCAGTGATAACATTGCCGAGACGG
TTGCCCATGCGGAGGAGTTCTATAGGAAGGTGCATCAGTCAAAGGCATCA
TCGGCTGATGCCGCTCCACCCAATGCGATGGCCGGTGAAGAGCACTCCCC
TGCGGTTGTCAAACCATCAGAGACTGCGGTGGCCAACAATGGTTGCCAGC
CAGCTGCAAGTGCAACCAAAGGCAAGAAGCACAAGAAAAGTCCTTGCGGG
AGTCCGGGAGAAAACAATGATGGCCAAGTGATATTGTCGGCGGATCAAGA
CGCCAATACTAATACCAAGGCCAAGAAACAGAAGAAGTGCCATATTGCAA
AGGATAACAATGGAATTCAAGCTGCTAGTTCTCATGACAACCCTAGTTCA
TCTGGCAATAAACAGGGAAGTCACAACTCCACGGCTATAACCTCCAATTC
TACAATGACGAGTAATGGTCTTCGGGGCGTGCAACCAGCTGAAGATGCTC
CCGCAATCTCCCAGTGGATCCAGTCGAGGAACAATGCCGCTGTTAGCAAG
AAATCGGAAGAGACAGCTGGTGGATCTCAATCGCGGGTGCAATCGAATGT
TGCATCCATATCCTCGCCAGCGGTGAAAGCAACTAGCGACGCTGCTATAC
CCACACCAGCAGAACGCGCAGAGCGTAGTCGCCTGCGCCGAAATCGCAAT
TGGATACTAAGCAGGGACGTTGATGAAGATGCCGTGGTGCTGGTGAGCAG
CGGTGATGAGGAGACCACCGCCGCCGATGATGGCCAAACCGAGAGAAGAC
TTTCACCCGATGAGAATCAAACCCTTTTCACATATCCGCCAACTGGTACC
GGTGGCCTGAGCATCACCATCAAGGACTTTATGTGTCTCAGTAAAGGATC
GTATCTGAACGATATAATCATTGATTTTTATCTGCGCTGGCTAAAGAATA
ACATCATACCAGAGGAACAGCGCGATAGGACGCATATCTTTAGCACGTTT
TTCCACAAAAGATTGACCACACGAACGAATCCCAGAAATACGAAGCAGAC
GGCGGCCCAGAAGCGTCACGAAAGGGTTGAGAAGTGGACACGAAACGTCA
ATATATTCGACAAGGACTTCATTATAATACCATTCAATGAGCAGTCCCAT
TGGATACTGGCCATTATATGTTATCCAAACCTTAGAAGCCCGGTGGTAAA
CAATAATAATGTGCAGACGACACTCAGTGATGATATTCCCATCAAACAGC
CGTTGATACTTATTTTCGATTCGTTGGCAGTCACCTCAAGACATCGAGCG
ATTGCCATATTGCGGGATTATCTCACCTGTGAGCACAAGGCCAAGTATCC
GAATGCGCTGGCGCATGTCTTTAACAAGGATAATATGCCCGGTCATAGTG
TGGAGGTGCCGCAACAGCAGAATCTTACAGATTGCGGCCTCTATCTGCTG
CAATATGTGGAGCAATTCTTCACAAAACCCATCAACGACTATACACTGCC
CATTAAGGAGCTGAGCAATTGGTTTGACCTGCTCACAGTAACCAAGAAGC
GTGAGGATATCGCTAATCTCATCAAGAAGCTTATGAATGAAAGCAATCAG
CAGCGCAAAATTTTGCCGGTCATTAAGTTTCCGACATTAAATGGCCAACT
GGTGATGGATGAGGAGGATAGCGAGGAGGAGAATTCTAAAGAGGAGCATA
AAACTACGTTGGTTTGTTCAAAAGACAGAAAACCGCCGAGGAGAAGGAAT
ACACTCAAAGCAAGCTTTCTAGACCAT
BO28587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:40:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12717-RB | 2046 | CG12717-PB | 1..2043 | 17..2059 | 10170 | 99.9 | Plus |
| CG12717-RA | 2046 | CG12717-PA | 1..2043 | 17..2059 | 10170 | 99.9 | Plus |
| CG41423-RA | 873 | CG41423-PA | 422..818 | 1599..1998 | 1530 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12717-RB | 2970 | CG12717-RB | 269..2311 | 17..2059 | 10170 | 99.9 | Plus |
| CG12717-RA | 2734 | CG12717-RA | 269..2311 | 17..2059 | 10170 | 99.9 | Plus |
| CG41423-RA | 873 | CG41423-RA | 422..818 | 1599..1998 | 1530 | 92.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:40:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12761301..12763343 | 2059..17 | 10170 | 99.9 | Minus |
| Y | 3667352 | Y | 3265724..3266636 | 1074..1998 | 3205 | 90.9 | Plus |
| Y | 3667352 | Y | 3236015..3236733 | 1927..1211 | 2675 | 92.1 | Minus |
| Y | 3667352 | Y | 3093061..3093850 | 1184..1993 | 2620 | 89.4 | Plus |
| Y | 3667352 | Y | 3203848..3204637 | 1993..1184 | 2620 | 89.4 | Minus |
| Y | 3667352 | Y | 3229384..3230178 | 2000..1184 | 2605 | 89.4 | Minus |
| Y | 3667352 | Y | 3212106..3212770 | 1327..2000 | 2410 | 91.5 | Plus |
| Ymm | 880023 | Ymm | 542011..542675 | 1327..2000 | 2395 | 91.4 | Plus |
| Y | 3667352 | Y | 3060612..3061399 | 1184..2000 | 2385 | 88 | Plus |
| Ymm | 880023 | Ymm | 339140..339927 | 1184..2000 | 2385 | 88 | Plus |
| Y | 3667352 | Y | 3093858..3094576 | 1159..436 | 2325 | 89.1 | Minus |
| Y | 3667352 | Y | 3203122..3203840 | 436..1159 | 2325 | 89.1 | Plus |
| Y | 3667352 | Y | 3084782..3085380 | 565..1159 | 2030 | 90.2 | Plus |
| Y | 3667352 | Y | 3212774..3213372 | 1159..565 | 2030 | 90.2 | Minus |
| Ymm | 880023 | Ymm | 543838..544436 | 1159..565 | 2030 | 90.2 | Minus |
| Y | 3667352 | Y | 3258611..3259211 | 565..1159 | 1990 | 89.4 | Plus |
| U | 3151297 | U | 1283393..1283923 | 1340..1866 | 1860 | 91.7 | Plus |
| Y | 3667352 | Y | 3250318..3250813 | 1051..565 | 1785 | 91.1 | Minus |
| Ymm | 880023 | Ymm | 775385..775880 | 565..1051 | 1770 | 90.9 | Plus |
| Ymm | 880023 | Ymm | 336582..337055 | 1395..1866 | 1720 | 91.8 | Plus |
| Y | 3667352 | Y | 3241625..3242076 | 1546..2000 | 1670 | 91.6 | Plus |
| Ymm | 880023 | Ymm | 315889..316340 | 2000..1546 | 1670 | 91.6 | Minus |
| Ymm | 880023 | Ymm | 324150..324601 | 2000..1546 | 1670 | 91.6 | Minus |
| Ymm | 880023 | Ymm | 332297..332748 | 2000..1546 | 1670 | 91.6 | Minus |
| Ymm | 880023 | Ymm | 328224..328675 | 2000..1546 | 1655 | 91.4 | Minus |
| Y | 3667352 | Y | 3071943..3072465 | 1184..1719 | 1650 | 88.5 | Plus |
| Y | 3667352 | Y | 3218292..3218814 | 1719..1184 | 1650 | 88.5 | Minus |
| Ymm | 880023 | Ymm | 320828..321279 | 2000..1546 | 1640 | 91.2 | Minus |
| Y | 3667352 | Y | 3259215..3259665 | 2000..1546 | 1560 | 90.5 | Minus |
| Y | 3667352 | Y | 3113645..3114095 | 2000..1546 | 1515 | 89.9 | Minus |
| Y | 3667352 | Y | 3137577..3138027 | 2000..1546 | 1515 | 89.9 | Minus |
| Y | 3667352 | Y | 3164951..3165401 | 1546..2000 | 1515 | 89.9 | Plus |
| Y | 3667352 | Y | 3185270..3185720 | 1546..2000 | 1515 | 89.9 | Plus |
| Y | 3667352 | Y | 3113162..3113641 | 682..1159 | 1505 | 88.7 | Plus |
| Ymm | 880023 | Ymm | 653379..653824 | 2000..1546 | 1405 | 89.3 | Minus |
| Y | 3667352 | Y | 3228672..3229178 | 435..919 | 1395 | 86.7 | Plus |
| Ymm | 880023 | Ymm | 342205..342711 | 919..435 | 1395 | 86.7 | Minus |
| Y | 3667352 | Y | 3061605..3062111 | 919..435 | 1380 | 86.5 | Minus |
| Ymm | 880023 | Ymm | 340133..340639 | 919..435 | 1380 | 86.5 | Minus |
| Ymm | 880023 | Ymm | 318851..319212 | 2000..1636 | 1295 | 91 | Minus |
| Ymm | 880023 | Ymm | 341675..342012 | 1643..1985 | 1270 | 92.7 | Plus |
| Ymm | 880023 | Ymm | 323579..323942 | 565..919 | 1260 | 90.4 | Plus |
| Y | 3667352 | Y | 3242284..3242647 | 919..565 | 1230 | 89.8 | Minus |
| Ymm | 880023 | Ymm | 318280..318643 | 565..919 | 1230 | 89.8 | Plus |
| Y | 3667352 | Y | 3137009..3137369 | 565..919 | 1180 | 89.6 | Plus |
| Y | 3667352 | Y | 3165609..3165969 | 919..565 | 1180 | 89.6 | Minus |
| Y | 3667352 | Y | 3185928..3186288 | 919..565 | 1180 | 89.6 | Minus |
| Ymm | 880023 | Ymm | 320260..320620 | 565..919 | 1180 | 89.6 | Plus |
| Y | 3667352 | Y | 3273136..3273470 | 1546..1881 | 1150 | 90.2 | Plus |
| U | 3151297 | U | 2460916..2461208 | 1998..1703 | 1145 | 93.2 | Minus |
| Ymm | 880023 | Ymm | 544631..544962 | 889..565 | 1070 | 89.5 | Minus |
| Y | 3667352 | Y | 3191258..3191492 | 1780..1546 | 845 | 90.6 | Minus |
| Ymm | 880023 | Ymm | 527789..528037 | 919..680 | 820 | 89.6 | Minus |
| Y | 3667352 | Y | 3137367..3137573 | 951..1159 | 785 | 92.8 | Plus |
| Ymm | 880023 | Ymm | 527583..527791 | 1159..951 | 775 | 91.4 | Minus |
| Y | 3667352 | Y | 3165405..3165611 | 1159..951 | 770 | 92.3 | Minus |
| Y | 3667352 | Y | 3185724..3185930 | 1159..951 | 770 | 92.3 | Minus |
| Y | 3667352 | Y | 3242080..3242286 | 1159..951 | 755 | 91.9 | Minus |
| Ymm | 880023 | Ymm | 318641..318847 | 951..1159 | 755 | 91.9 | Plus |
| Ymm | 880023 | Ymm | 320618..320824 | 951..1159 | 755 | 91.9 | Plus |
| Ymm | 880023 | Ymm | 323940..324146 | 951..1159 | 755 | 91.9 | Plus |
| Y | 3667352 | Y | 3061403..3061607 | 1159..951 | 710 | 90.4 | Minus |
| Y | 3667352 | Y | 3229176..3229380 | 951..1159 | 710 | 90.4 | Plus |
| Ymm | 880023 | Ymm | 339931..340135 | 1159..951 | 710 | 90.4 | Minus |
| Ymm | 880023 | Ymm | 542679..542883 | 1159..951 | 710 | 90.4 | Minus |
| Ymm | 880023 | Ymm | 542881..543071 | 919..738 | 680 | 91.6 | Minus |
| Ymm | 880023 | Ymm | 342013..342207 | 1149..951 | 675 | 90.5 | Minus |
| Y | 3667352 | Y | 3085384..3085552 | 2000..1829 | 660 | 93.6 | Minus |
| Ymm | 880023 | Ymm | 543666..543834 | 1829..2000 | 660 | 93.6 | Plus |
| Ymm | 880023 | Ymm | 500126..500288 | 1881..1718 | 590 | 92.1 | Minus |
| Y | 3667352 | Y | 3108091..3108258 | 1673..1840 | 585 | 89.9 | Plus |
| 3L | 28110227 | 3L | 6745162..6745462 | 1904..1604 | 560 | 79.1 | Minus |
| Y | 3667352 | Y | 3084616..3084785 | 435..607 | 545 | 89 | Plus |
| Y | 3667352 | Y | 3213369..3213538 | 607..435 | 530 | 88.4 | Minus |
| Y | 3667352 | Y | 3250810..3250979 | 607..435 | 530 | 88.4 | Minus |
| Ymm | 880023 | Ymm | 544433..544602 | 607..435 | 530 | 88.4 | Minus |
| Ymm | 880023 | Ymm | 544959..545128 | 607..435 | 530 | 88.4 | Minus |
| Ymm | 880023 | Ymm | 775219..775388 | 435..607 | 530 | 88.4 | Plus |
| Y | 3667352 | Y | 3236835..3236963 | 827..699 | 525 | 93.8 | Minus |
| Ymm | 880023 | Ymm | 337681..337809 | 699..827 | 525 | 93.8 | Plus |
| Y | 3667352 | Y | 3265594..3265722 | 699..827 | 510 | 93 | Plus |
| Y | 3667352 | Y | 3258446..3258614 | 435..607 | 480 | 87.9 | Plus |
| Y | 3667352 | Y | 3236737..3236833 | 1170..1074 | 395 | 93.8 | Minus |
| Y | 3667352 | Y | 3113042..3113146 | 435..539 | 360 | 89.5 | Plus |
| Y | 3667352 | Y | 3085601..3085673 | 1256..1184 | 305 | 94.5 | Minus |
| Ymm | 880023 | Ymm | 541898..541970 | 1184..1256 | 305 | 94.5 | Plus |
| Ymm | 880023 | Ymm | 543545..543617 | 1184..1256 | 305 | 94.5 | Plus |
| Y | 3667352 | Y | 3136914..3137012 | 506..607 | 295 | 88.2 | Plus |
| Y | 3667352 | Y | 3165966..3166064 | 607..506 | 295 | 88.2 | Minus |
| Y | 3667352 | Y | 3186285..3186383 | 607..506 | 295 | 88.2 | Minus |
| Ymm | 880023 | Ymm | 528114..528212 | 607..506 | 295 | 88.2 | Minus |
| Ymm | 880023 | Ymm | 337811..337885 | 1074..1148 | 285 | 92 | Plus |
| Ymm | 880023 | Ymm | 337598..337652 | 480..534 | 260 | 98.2 | Plus |
| Ymm | 880023 | Ymm | 500068..500125 | 1965..1908 | 260 | 96.6 | Minus |
| Ymm | 880023 | Ymm | 528038..528117 | 647..565 | 245 | 89.2 | Minus |
| Ymm | 880023 | Ymm | 328164..328220 | 1103..1159 | 225 | 93 | Plus |
| Ymm | 880023 | Ymm | 332237..332293 | 1103..1159 | 225 | 93 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:40:49 has no hits.
BO28587.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:57:06 Download gff for
BO28587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12717-RA | 263..2305 | 17..2061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:33:30 Download gff for
BO28587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12717-RA | 269..2311 | 17..2061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:39:24 Download gff for
BO28587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12717-RA | 269..2311 | 17..2061 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:39:24 Download gff for
BO28587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12761299..12763343 | 17..2061 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:33:30 Download gff for
BO28587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12655332..12657376 | 17..2061 | 99 | | Minus |
BO28587.pep Sequence
Translation from 16 to 2077
> BO28587.pep
MDRKETVSKDQAVRRIAHNDFILVSRQLLINRADTDPDKGSARMLIIYSS
GKQHIVTFKLPNLACRVQDLFFQMDLQIDESTTIDCIENAGGIIHLVVSV
GFPISDNIAETVAHAEEFYRKVHQSKASSADAAPPNAMAGEEHSPAVVKP
SETAVANNGCQPAASATKGKKHKKSPCGSPGENNDGQVILSADQDANTNT
KAKKQKKCHIAKDNNGIQAASSHDNPSSSGNKQGSHNSTAITSNSTMTSN
GLRGVQPAEDAPAISQWIQSRNNAAVSKKSEETAGGSQSRVQSNVASISS
PAVKATSDAAIPTPAERAERSRLRRNRNWILSRDVDEDAVVLVSSGDEET
TAADDGQTERRLSPDENQTLFTYPPTGTGGLSITIKDFMCLSKGSYLNDI
IIDFYLRWLKNNIIPEEQRDRTHIFSTFFHKRLTTRTNPRNTKQTAAQKR
HERVEKWTRNVNIFDKDFIIIPFNEQSHWILAIICYPNLRSPVVNNNNVQ
TTLSDDIPIKQPLILIFDSLAVTSRHRAIAILRDYLTCEHKAKYPNALAH
VFNKDNMPGHSVEVPQQQNLTDCGLYLLQYVEQFFTKPINDYTLPIKELS
NWFDLLTVTKKREDIANLIKKLMNESNQQRKILPVIKFPTLNGQLVMDEE
DSEEENSKEEHKTTLVCSKDRKPPRRRNTLKASFLDH
BO28587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12717-PB | 681 | CG12717-PB | 1..681 | 1..681 | 3528 | 100 | Plus |
| CG12717-PA | 681 | CG12717-PA | 1..681 | 1..681 | 3528 | 100 | Plus |
| CG41423-PA | 290 | CG41423-PA | 142..274 | 529..662 | 622 | 88.8 | Plus |
| velo-PD | 711 | CG10107-PD | 432..590 | 504..660 | 595 | 73.6 | Plus |
| velo-PB | 711 | CG10107-PB | 432..590 | 504..660 | 595 | 73.6 | Plus |
| velo-PD | 711 | CG10107-PD | 167..322 | 343..498 | 545 | 63.5 | Plus |
| CG41423-PA | 290 | CG41423-PA | 55..96 | 229..270 | 175 | 81 | Plus |
