BO28590.complete Sequence
480 bp assembled on 2011-07-13
> BO28590.complete
GAAGTTATCAGTCGACATGCTGGATATCGCTGCACAACTCCTTGCCGTGG
GCCTCTTGTGGGGCGTTACCAATCCGTTTATTCGCCTCGGCAGCCAGGGA
ATCGAGTCGGTTGGTGATACGGGCTCAAAGTGGCGTAACTTTGTCCAGGA
GGCACGCACAATCGGCTCCCGGTGGCGCTATTGGATACCCTTCGGTCTCA
ACCAGTGCGGGAGTGCTCTGTACGTTTGGACGCTCCAGAGGGCCAGTATT
ACAGTGGCGGTGCCAGTGGCCAATTCCCTGAGCTTCGCATTTACGGCAAT
CACCGGATATGCGCTGGGGGAAAAACTGCCGGGAAGAAAAGTCATTCTGG
GCACCCTGCTCGTCTGCTGTGGCAGTATCCTGATGATATACGATAAGATT
TTGCAGGAACAGGCCCAGCACCAGCTAAATATAACATTCCACGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCTAAAGGG
BO28590.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12929-RA | 429 | CG12929-PA | 1..426 | 17..442 | 2130 | 100 | Plus |
| CG12929-RB | 339 | CG12929-PB | 1..322 | 17..338 | 1610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12929-RA | 493 | CG12929-RA | 50..475 | 17..442 | 2130 | 100 | Plus |
| CG12929-RB | 551 | CG12929-RB | 50..371 | 17..338 | 1610 | 100 | Plus |
| CG12929-RB | 551 | CG12929-RB | 430..533 | 339..442 | 520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9586290..9586596 | 338..32 | 1535 | 100 | Minus |
| 2R | 25286936 | 2R | 9586128..9586231 | 442..339 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:53:24 has no hits.
BO28590.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:16 Download gff for
BO28590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12929-RA | 11..443 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:21 Download gff for
BO28590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12929-RA | 50..482 | 17..450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:29:52 Download gff for
BO28590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12929-RA | 50..482 | 17..450 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:29:52 Download gff for
BO28590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9586290..9586595 | 33..338 | 100 | <- | Minus |
| 2R | 9586650..9586665 | 17..32 | 100 | | Minus |
| 2R | 9586121..9586231 | 339..450 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:21 Download gff for
BO28590.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5473795..5474100 | 33..338 | 100 | <- | Minus |
| arm_2R | 5474155..5474170 | 17..32 | 100 | | Minus |
| arm_2R | 5473626..5473736 | 339..450 | 96 | <- | Minus |
BO28590.pep Sequence
Translation from 16 to 478
> BO28590.pep
MLDIAAQLLAVGLLWGVTNPFIRLGSQGIESVGDTGSKWRNFVQEARTIG
SRWRYWIPFGLNQCGSALYVWTLQRASITVAVPVANSLSFAFTAITGYAL
GEKLPGRKVILGTLLVCCGSILMIYDKILQEQAQHQLNITFHASFLDHSF
GALK
BO28590.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12929-PA | 142 | CG12929-PA | 1..142 | 1..142 | 741 | 100 | Plus |
| CG12929-PB | 112 | CG12929-PB | 1..107 | 1..107 | 560 | 100 | Plus |
