BO28618.complete Sequence
3157 bp assembled on 2011-08-31
GenBank Submission: KX794722
> BO28618.complete
GAAGTTATCAGTCGACATGTACATGCAGCATGAGCGACATTCCGACAGCG
ACCCCAACTCCCGCCATCAACAAACCGAGGCATCCCACATGAGAGACCAC
TGGAAGCCGTCAAAATCCCAACAGTCGCAACAATCTGATCGTGTAGACCC
TCATGACAAGCCATCGCAGACGGCGGTCTCCTTTCTGCAGAAACACCACA
CGCCTAAGAACCCGGAATCGAAGGCTAATCCAGATGATGGGGCGTCCTGC
TCATGCACCGCAAAGAGGTCCAAGTCCGCCGATCCACCAGCGGTTAAAGC
TCACACCTGTGCATGCAACACCGATCCAAGTCCATGTGGACTGGGTCATC
AGGAGAAATCCAGTTCGAGGAAGCCCTGCTCCCAGAAAACATCGGTTACG
GAACCAGAGAAGGCTTCCTCATTCAAGAGTGCTATAACAGCGTGTACCAA
GGAGCTCCTCGATCCCTGCACTTGTGGCGCCCACCCACCATACTGGGCTG
GTCAAAGCAACTTGGTAACCGGACCATCCTACAGTAGAGCAATGGACCCC
TCCTCAAGCACTCTCGCTCCCTTGCATAGACCCGGAGCATCAAAAGGCAG
CTTTGGTCGATCCAAGAGTTTGGCCAGTCTGCCTAGTAAATCTAATCCGC
CAACTCAGAGTGGCGTCACTTGGTTGTCGGCTTTAAAGGATCCGGAGAGT
ACATGTTGCTCTTCCAAAGAGGACGAACGTCCTGCATGTACCTGCAACGC
TACCCAGACTAATCAGGATCCTTCTATGAGTTCACTTCCTCAGAGCCATC
CCAATTATCGCAGTATGACATCCAAATCAAGTAATTTCAGGGCGCCAAAC
CCGCGCAATCAACCCTCCTTTGGGCCAGGCGATGAGACCTCAGCAACCAC
ACGATCCCAATCGATTGTGGGTCAGGTCACCTGCCTATGCGCATCGGAGC
ATCAACCCACCAAGGCCTTTGTGTCGAGCCTGGCCGATCGGGAATGCCCA
AATGAGATCCAGATTGCGCCATGCCCCTCCACAAGAATACACCATCCATC
CGGGTTTGCCCAGTTCACCGATTGTCAGAACTCTCAAGGCGACCCCAGTA
CCTCTTTCCGTTCTAGGAAAGTGAGCGTTAAGGGTCAGGAGGAATTTTGT
GACTGTGATGCTTCTGATAACTTCTCCGAACTGTCCGATCCCATCCAGAC
CAGTCTTCATACGCACAGGAGTCTTTCCGGGGGTAGTTGCCTGTGCAACG
ACGATGCAGATCCTCCGAAGGAACCCGAAAAGGCTACGTGTGTCAGCAAG
CAGTGCCAGTGCTCTTCGAATGACGAGCTTCAGGGGATGCAAAGTGCCCA
AGCGGGTACCGGCTATCAGACACCAGAGGATCTTTGTGGAAATAGGGCTA
TGGCCTGCTGTTCTCGTAAGGAACGCATCCTGATGCTGATGGAGAAACTG
ACCAGTCCTGGTTGCGATTGCGGTATATCTCGCCCCTGCCTGACCCAACA
ACTTTTCCGGGAACTAACACTACTCCTGAGATCAGAAAAAGATGATGCAG
TTGCACCAGCGGATGAAGCTAGCCCACCGTGCCTAACCTTCGATGAGTGC
TGTACGGCCCAACATGCTGGCAATGGGGAAGGCGATCCAGTCGAAAAACC
CCCGTCAAAGAGAGAGCTCCAACGAGTCGAGTGCTTTCATCAACTGGAGG
AATACCTCTGCAAGTGCTTCCTGCCGCCGGCAGAACCTCAGATTCCTGAG
ACCGATATCTATGCTTTTGAACTAGATCCGGACTTTCCACCAGAACCTGA
GCCAAAATCTCCCAAGGAAAATGACAACATGCAACCTTGTCAGTGCCCGG
AACAATTCTTTGACATTGGAAATGCACTAACCTGTTCGGGTGATGGCTTG
GATGATGACTTCTTTCGTGATTGTGAGGATGACGAGGAAGTAAAAAAGTT
CGAAAGTAAGGATGATGGTAAAGCAACCACGGAGCCGGATCTCTGCCAAT
CTCTTAAAGCATTCATCGACAAGGAACTGCAAGAAATTCTTGCGGAGGAG
GCCAATAAGGAAGGCGAGGAGGTAGAAGAAAAAACTCCTAGCACAGTACT
AAGGGAAATCTGTGAGAGACCCACAACCGTGGCGTCACCGGAAGAAGAGG
AGAAACCAGAACAGATTGAGTGTCCATTTGCTGGCATGGTGTCCTGTCCT
CCTTGGACCACACAGCAAACAGACTGGGCAGCCTTCCCCTACAACTTAGA
TCCCTGTGCGCAAAAGGAGTCACCTAGCCCGGCGCCCCGGGGTCCACGTA
CTGGGCTATTGCCCGAAGGACCTCTGTCACCCGATATGAGGAACCTCTGC
GAGCAGCTTTTGCGAAAAGCTCTTAAGGATTGTGGTCTGTGTGGTGGTGA
CGATGTGTACTCCTGCGAGGACGATGTATGCGAAGAGTGCGCGCTGAATT
GTGAGGAATGCCCGGAAGATTGCCCGTTGGAAAAGTGCGAGGAATGCGAT
GATGAGTGTCCCCCAGAACAACAAGGATGCCTATGCTGCCACTGTCGCGC
TCTCATATGCGACGAGGAGTGCAAGACGGTTGCCAATACCCTGCGCTCCG
GAATGTGTGATCCACTCTGCGAAATGAAATACTTTATAGACTCCATCATC
GTTGATATGCATGCCATGGATTGTGTGCTCGGCAACAAGAAAGCGAAACC
AAAGCACCTTAAGGCTACAGACTTGACCAACAGAGGTGGACCCGGCGATA
GTTTTCCCGTCAAAATTAAGAGTGTGTGGCCATTGGGTAACACCGCTCTC
TACGTCCAATGGCAATTGGAGGACTGTCGCGCTGTAGCAGGATATGAGAT
TTACTTGGATGGGCATTTGACGAACCGATTTTACAGTTTTCGTCACGAGG
CCGGAGTTATTACCAATGCGGATGTGACCAATCCGCACCAGGTTGTGGTG
CGCGCCGTAGCGGTGGGTCAGGAGTTTCCCGGCGAGGGTCCGGGTAAGGA
TGCGACCCAGGAATGTGGCTGCCAGGCGGTGGCACTTGCTCATCCCGAAT
TGAAGGCGGGAGCACAGAGGCCGTGGTCGCCCAGTCTCTACTATTATGAT
CCCAACCAATTGCCGCCGGCGGAGGACGTGCAGCCGTGCGCAAGCTTTCT
AGACCAT
BO28618.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pif1B-RD | 3126 | CG33720-PD | 1..3123 | 17..3139 | 15615 | 100 | Plus |
| Pif1B-RC | 3126 | CG33720-PC | 1..3123 | 17..3139 | 15615 | 100 | Plus |
| Pif1B-RB | 3126 | CG33720-PB | 1..3123 | 17..3139 | 15615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pif1A-RA | 6324 | CG42599-RA | 2872..5994 | 17..3139 | 15615 | 100 | Plus |
| Pif1A-RH | 7694 | CG42599-RH | 4242..7364 | 17..3139 | 15615 | 100 | Plus |
| Pif1A-RG | 7761 | CG42599-RG | 4309..7431 | 17..3139 | 15615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8775318..8777927 | 2626..17 | 13050 | 100 | Minus |
| 3R | 32079331 | 3R | 8774616..8774908 | 3139..2847 | 1465 | 100 | Minus |
| 3R | 32079331 | 3R | 8774971..8775120 | 2848..2699 | 735 | 99.3 | Minus |
| 3R | 32079331 | 3R | 8775183..8775261 | 2704..2626 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:25:06 has no hits.
BO28618.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-31 09:30:40 Download gff for
BO28618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pif1B-RB | 696..3818 | 17..3141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:23 Download gff for
BO28618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pif1A-RG | 4309..7431 | 17..3141 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:04 Download gff for
BO28618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pif1A-RG | 4309..7431 | 17..3141 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:04 Download gff for
BO28618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8774614..8774906 | 2849..3141 | 99 | <- | Minus |
| 3R | 8774971..8775114 | 2705..2848 | 100 | <- | Minus |
| 3R | 8775183..8775260 | 2627..2704 | 100 | <- | Minus |
| 3R | 8775318..8777927 | 17..2626 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:23 Download gff for
BO28618.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4600336..4600628 | 2849..3141 | 99 | <- | Minus |
| arm_3R | 4600693..4600836 | 2705..2848 | 100 | <- | Minus |
| arm_3R | 4600905..4600982 | 2627..2704 | 100 | <- | Minus |
| arm_3R | 4601040..4603649 | 17..2626 | 100 | | Minus |
BO28618.pep Sequence
Translation from 16 to 3157
> BO28618.pep
MYMQHERHSDSDPNSRHQQTEASHMRDHWKPSKSQQSQQSDRVDPHDKPS
QTAVSFLQKHHTPKNPESKANPDDGASCSCTAKRSKSADPPAVKAHTCAC
NTDPSPCGLGHQEKSSSRKPCSQKTSVTEPEKASSFKSAITACTKELLDP
CTCGAHPPYWAGQSNLVTGPSYSRAMDPSSSTLAPLHRPGASKGSFGRSK
SLASLPSKSNPPTQSGVTWLSALKDPESTCCSSKEDERPACTCNATQTNQ
DPSMSSLPQSHPNYRSMTSKSSNFRAPNPRNQPSFGPGDETSATTRSQSI
VGQVTCLCASEHQPTKAFVSSLADRECPNEIQIAPCPSTRIHHPSGFAQF
TDCQNSQGDPSTSFRSRKVSVKGQEEFCDCDASDNFSELSDPIQTSLHTH
RSLSGGSCLCNDDADPPKEPEKATCVSKQCQCSSNDELQGMQSAQAGTGY
QTPEDLCGNRAMACCSRKERILMLMEKLTSPGCDCGISRPCLTQQLFREL
TLLLRSEKDDAVAPADEASPPCLTFDECCTAQHAGNGEGDPVEKPPSKRE
LQRVECFHQLEEYLCKCFLPPAEPQIPETDIYAFELDPDFPPEPEPKSPK
ENDNMQPCQCPEQFFDIGNALTCSGDGLDDDFFRDCEDDEEVKKFESKDD
GKATTEPDLCQSLKAFIDKELQEILAEEANKEGEEVEEKTPSTVLREICE
RPTTVASPEEEEKPEQIECPFAGMVSCPPWTTQQTDWAAFPYNLDPCAQK
ESPSPAPRGPRTGLLPEGPLSPDMRNLCEQLLRKALKDCGLCGGDDVYSC
EDDVCEECALNCEECPEDCPLEKCEECDDECPPEQQGCLCCHCRALICDE
ECKTVANTLRSGMCDPLCEMKYFIDSIIVDMHAMDCVLGNKKAKPKHLKA
TDLTNRGGPGDSFPVKIKSVWPLGNTALYVQWQLEDCRAVAGYEIYLDGH
LTNRFYSFRHEAGVITNADVTNPHQVVVRAVAVGQEFPGEGPGKDATQEC
GCQAVALAHPELKAGAQRPWSPSLYYYDPNQLPPAEDVQPCASFLDH
BO28618.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pif1B-PD | 1041 | CG33720-PD | 1..1041 | 1..1041 | 5740 | 100 | Plus |
| Pif1B-PC | 1041 | CG33720-PC | 1..1041 | 1..1041 | 5740 | 100 | Plus |
| Pif1B-PB | 1041 | CG33720-PB | 1..1041 | 1..1041 | 5740 | 100 | Plus |
| Pif1B-PA | 1041 | CG33720-PA | 1..1041 | 1..1041 | 5740 | 100 | Plus |
