BO28621.complete Sequence
1114 bp assembled on 2011-07-13
GenBank Submission: KX794783
> BO28621.complete
GAAGTTATCAGTCGACATGGCGGATAAAGTAAATGTGTGCATTGTGGGCT
CCGGCAACTGGGGTTCGGCCATAGCGAAAATCGTGGGCGCCAATGCCGCC
GCTCTGCCGGAGTTCGAGGAGCGTGTGACGATGTTCGTCTACGAGGAGCT
CATCGATGGCAAGAAGCTGACGGAGATTATCAACGAGACGCACGAGAACG
TCAAGTACCTGAAAGGACACAAGCTGCCCCCGAATGTGGTTGCCGTGCCC
GACCTGGTTGAGGCCGCCAAGAACGCTGACATCCTGATCTTCGTGGTGCC
CCACCAGTTCATTCCCAACTTCTGCAAACAGCTACTGGGCAAGATTAAGC
CAAATGCCATCGCTATCTCCCTGATCAAGGGCTTCGACAAGGCCGAGGGC
GGCGGCATCGATCTGATCTCGCATATAATCACGCGTCACCTGAAGATCCC
ATGCGCCGTGTTGATGGGCGCAAACCTGGCCAACGAGGTGGCTGAGGGCA
ACTTCTGCGAAACGACAATCGGCTGCACGGACAAGAAGTATGGCAAGGTG
CTGCGCGATCTCTTCCAGGCGAACCACTTCCGCGTGGTGGTCGTGGACGA
TGCTGATGCCGTGGAGGTTTGCGGTGCCCTCAAGAACATCGTGGCCTGCG
GCGCTGGCTTTGTTGATGGCCTCAAGCTGGGCGACAACACCAAGGCGGCT
GTCATCCGGCTGGGCCTCATGGAGATGATTCGCTTCGTGGACGTCTTCTA
TCCCGGAAGCAAGCTGTCCACCTTCTTCGAGAGCTGCGGCGTGGCCGATC
TGATCACGACGTGTTACGGTGGCCGTAACCGCCGCGTCTCTGAGGCGTTT
GTGACTTCTGGAAAAACCATTGAGGAGCTGGAGAAGGAAATGCTCAACGG
CCAGAAGCTGCAGGGCCCACCCACTGCCGAGGAGGTCAACTACATGCTGA
AGAACAAGGGTCTGGAGGACAAATTCCCCCTGTTCACGGCTATTCACAAA
ATATGCACAAATCAGCTCAAGCCTAATGATTTAATTGATTGCATACGCAA
TCACCCTGAGCATATGGATACGTCCATCATGCCGTCGCCAAAACTTGCAA
GCTTTCTAGACCAT
BO28621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gpdh-RF | 1083 | CG9042-PF | 1..1080 | 17..1096 | 5400 | 100 | Plus |
| Gpdh-RB | 1083 | CG9042-PB | 1..1080 | 17..1096 | 5400 | 100 | Plus |
| Gpdh-RG | 1062 | CG9042-PG | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:58:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gpdh-RF | 2503 | CG9042-RF | 468..1547 | 17..1096 | 5400 | 100 | Plus |
| Gpdh-RB | 1651 | CG9042-RB | 146..1225 | 17..1096 | 5400 | 100 | Plus |
| Gpdh-RG | 2078 | CG9042-RG | 468..1517 | 17..1066 | 5250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:58:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5946314..5946690 | 444..820 | 1885 | 100 | Plus |
| 2L | 23513712 | 2L | 5946043..5946250 | 238..445 | 1040 | 100 | Plus |
| 2L | 23513712 | 2L | 5944267..5944447 | 60..240 | 905 | 100 | Plus |
| 2L | 23513712 | 2L | 5947017..5947171 | 818..972 | 775 | 100 | Plus |
| 2L | 23513712 | 2L | 5947240..5947333 | 973..1066 | 470 | 100 | Plus |
| 2L | 23513712 | 2L | 5944110..5944154 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:58:51 has no hits.
BO28621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 12:47:03 Download gff for
BO28621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpdh-RB | 429..1508 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:14:43 Download gff for
BO28621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpdh-RB | 146..1225 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:32:15 Download gff for
BO28621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpdh-RB | 146..1225 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:32:15 Download gff for
BO28621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5944110..5944153 | 17..60 | 100 | -> | Plus |
| 2L | 5944268..5944445 | 61..238 | 100 | -> | Plus |
| 2L | 5946044..5946250 | 239..445 | 100 | -> | Plus |
| 2L | 5946316..5946688 | 446..818 | 100 | -> | Plus |
| 2L | 5947018..5947171 | 819..972 | 100 | -> | Plus |
| 2L | 5947240..5947332 | 973..1065 | 100 | -> | Plus |
| 2L | 5947857..5947887 | 1066..1098 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:14:43 Download gff for
BO28621.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5944110..5944153 | 17..60 | 100 | -> | Plus |
| arm_2L | 5944268..5944445 | 61..238 | 100 | -> | Plus |
| arm_2L | 5946044..5946250 | 239..445 | 100 | -> | Plus |
| arm_2L | 5946316..5946688 | 446..818 | 100 | -> | Plus |
| arm_2L | 5947018..5947171 | 819..972 | 100 | -> | Plus |
| arm_2L | 5947240..5947332 | 973..1065 | 100 | -> | Plus |
| arm_2L | 5947857..5947887 | 1066..1098 | 93 | | Plus |
BO28621.pep Sequence
Translation from 16 to 1114
> BO28621.pep
MADKVNVCIVGSGNWGSAIAKIVGANAAALPEFEERVTMFVYEELIDGKK
LTEIINETHENVKYLKGHKLPPNVVAVPDLVEAAKNADILIFVVPHQFIP
NFCKQLLGKIKPNAIAISLIKGFDKAEGGGIDLISHIITRHLKIPCAVLM
GANLANEVAEGNFCETTIGCTDKKYGKVLRDLFQANHFRVVVVDDADAVE
VCGALKNIVACGAGFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKL
STFFESCGVADLITTCYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQG
PPTAEEVNYMLKNKGLEDKFPLFTAIHKICTNQLKPNDLIDCIRNHPEHM
DTSIMPSPKLASFLDH
BO28621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gpdh-PF | 360 | CG9042-PF | 1..360 | 1..360 | 1875 | 100 | Plus |
| Gpdh-PB | 360 | CG9042-PB | 1..360 | 1..360 | 1875 | 100 | Plus |
| Gpdh-PE | 350 | CG9042-PE | 1..350 | 1..350 | 1824 | 100 | Plus |
| Gpdh-PA | 350 | CG9042-PA | 1..350 | 1..350 | 1824 | 100 | Plus |
| Gpdh-PG | 353 | CG9042-PG | 1..350 | 1..350 | 1824 | 100 | Plus |
