BO28627.complete Sequence
1059 bp assembled on 2011-07-13
> BO28627.complete
GAAGTTATCAGTCGACATGTTGGCCACCGGTTTTCTGGCTCGCAGAACCG
TACTTAACCAGCCGGCGTTCAATTCATGGAGCACACTCCTCCGGACCGCT
AGAAAACGACCCACATCCACGGTTGCCGCCAGAGTTCCATTAAAGCTTCA
GTCACAGCAGCAATTTACAAGAGCATACTCGTCCTCCAAAACCATGGACA
CGCCGGCGGATGTATTCCGCGGCATTACGGATCGATTTGCCGGAGTAACA
GTCGATGGGCGCGAGGAGAACGTGGACAAATCCAGTTTCCGGGACAAGCT
CACAAAATCCCTGGACTTTTGGACGACGAACAAGAACCGGGCCATTTGGT
TCCGCGTGTACAAGGAGCAGGCTGATTGGGTGCCCATTCTGGCGGAGAAC
GGCTTTGATTTCCATCATGCCAAGACCGGTGTGGTGGTCATGTACCGCTG
GTTGCCGGAGCACGAGTCTAGCAACCTACCCACCTACGCCCACACGCTAA
TGGGCGTCGGCGGACTGGTTATCAACGAACAGGACGAGGTGCTGGTGGTG
TCCGATCGTTTTGCAATGATACCAAACAGCTGGAAGCTGCCCGGCGGCTA
TGTGGAGCCGCGGGAGAATCTCATCGATGCGGCAATACGAGAGGTGGCCG
AGGAGACGGGAATCCGCACCGAATTCCGCTCAGTGGTCAGTCTGCGGCAT
GCCCATGGCGGCACCTTCGGCTGCTCCGACATGTACGTGGTCATCGCCCT
AAAGCCACTGAATTTGGACTTTACGCGCTGCGAACGCGAGATAGCGCGCA
TCCAGTGGATGCCCATCGCGGAGTATCTGAAGCATCCGCAGGTCCACGAG
ACGAACAGGCAGTTCGTCTGCACCTTTTTGGACTACCAGAAGCGCGGCCT
GACCCTCACCTGTCGCGACGAAGTGCATCAGGTGCTAAAGAAGAAATACA
ATCTGTATTACGTGGATCGGGAGCAGCCACAGGAGCAGCAGGATAAAAAG
AATTCGGCAAGCTTTCTAGACCTATTCGTTTGGCGCTGCGAAAAAGGGGG
GAGGGTTAA
BO28627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8128-RB | 993 | CG8128-PB | 1..990 | 17..1006 | 4950 | 100 | Plus |
| CG8128-RA | 993 | CG8128-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8128-RB | 1809 | CG8128-RB | 648..1637 | 17..1006 | 4950 | 100 | Plus |
| CG8128-RA | 1530 | CG8128-RA | 369..1358 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15699162..15699862 | 306..1006 | 3505 | 100 | Plus |
| X | 23542271 | X | 15698521..15698687 | 17..183 | 835 | 100 | Plus |
| X | 23542271 | X | 15698760..15698881 | 184..305 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:55:10 has no hits.
BO28627.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:20 Download gff for
BO28627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8128-RA | 363..1355 | 22..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:07 Download gff for
BO28627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8128-RA | 374..1366 | 22..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:34 Download gff for
BO28627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8128-RA | 374..1366 | 22..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:34 Download gff for
BO28627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15698526..15698687 | 22..183 | 100 | -> | Plus |
| X | 15698760..15698881 | 184..305 | 100 | -> | Plus |
| X | 15699162..15699882 | 306..1028 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:07 Download gff for
BO28627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15592559..15592720 | 22..183 | 100 | -> | Plus |
| arm_X | 15592793..15592914 | 184..305 | 100 | -> | Plus |
| arm_X | 15593195..15593915 | 306..1028 | 98 | -> | Plus |
BO28627.pep Sequence
Translation from 16 to 1057
> BO28627.pep
MLATGFLARRTVLNQPAFNSWSTLLRTARKRPTSTVAARVPLKLQSQQQF
TRAYSSSKTMDTPADVFRGITDRFAGVTVDGREENVDKSSFRDKLTKSLD
FWTTNKNRAIWFRVYKEQADWVPILAENGFDFHHAKTGVVVMYRWLPEHE
SSNLPTYAHTLMGVGGLVINEQDEVLVVSDRFAMIPNSWKLPGGYVEPRE
NLIDAAIREVAEETGIRTEFRSVVSLRHAHGGTFGCSDMYVVIALKPLNL
DFTRCEREIARIQWMPIAEYLKHPQVHETNRQFVCTFLDYQKRGLTLTCR
DEVHQVLKKKYNLYYVDREQPQEQQDKKNSASFLDLFVWRCEKGGRV
BO28627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8128-PB | 330 | CG8128-PB | 1..330 | 1..330 | 1742 | 100 | Plus |
| CG8128-PA | 330 | CG8128-PA | 1..330 | 1..330 | 1742 | 100 | Plus |
