BO28634.complete Sequence
6211 bp assembled on 2011-07-28
GenBank Submission: KX794159
> BO28634.complete
GAAGTTATCAGTCGACATGGCATTCTCGCAGTCGTTCAACTTCGGAAACA
GCACCTTAATGGCGCTGGAGAAAGGAATGCAAGCGGACGACAAGGAGAAT
GCACAGCCAGGAAACGGAAATATCCAAGTCCAAAGTGCCGGCAATGAGGT
AAATAGCGAGATCCAGGAAATTAACTCGGAGTTTTTCCGGGACGAGTTCT
CCTACGAAGTGAATCAGGCCCATAAGCCAGCTGAACAATCAGTGGTCAAT
GTGTCTCAGGTTCAGCAGCATATGGCAGTTGTTTCCAATCAGGACTCTGA
GGATCAGAGCCGCTCATCCGCTTTGAATGACCAAATCTGCACACAGTCTT
CGTTCGAGGGCGAGGACGCAGGCGCGGATGCAGTGCTGGATCAGCCCAAT
CTGGATGAGAACAGCTTTTTGTGTCCTGCGCAGGATGAAGAGGCTTCCGA
GCAGCTGAAGGAAGACATCTTGCACAGTCATTCCGTATTGGCCAAGCAGG
AATTCTATCAAGAGATTTCGCAAGTCACGCAGAACCTGAGCAGCATGTCG
CCCAACCAACTGCGAGTGTCGCCCAACTCCTCGAGGATCCGCGAAGCGAT
GCCCGAAAGACCAGCAATGCCACTTGATCTCAACACGCTTAGATCAATAA
GCGCATGGAACCTGCCCATGAGCATTCAAGCGGAGTACAAGAAGAAGGGT
GTTGTCGATATGTTCGACTGGCAGGTGGAGTGTCTCTCCAAGCCTAGATT
GCTGTTTGAGCACTGCAACCTGGTTTATTCAGCACCCACGTCGGCAGGCA
AGACGTTGGTTAGTGAGATACTGATGCTGAAAACCGTACTGGAGCGAGGT
AAAAAGGTGCTGCTCATACTGCCCTTCATCTCGGTGGTGCGCGAGAAAAT
GTTCTACATGCAGGATCTGCTCACGCCGGCTGGTTACCGCGTGGAGGGAT
TCTACGGCGGCTATACGCCACCAGGAGGCTTTGAGAGCCTTCATGTGGCC
ATTTGCACAATTGAGAAGGCGAACTCCATTGTGAACAAGCTGATGGAGCA
GGGCAAACTGGAAACCATTGGCATGGTGGTGGTAGACGAAGTGCATCTCA
TTTCGGACAAGGGACGCGGCTATATCCTGGAACTTCTGCTAGCCAAGATC
CTCTACATGTCCCGTCGCAATGGACTGCAGATCCAGGTGATCACCATGTC
GGCCACACTCGAGAATGTGCAGCTGCTGCAGAGCTGGCTTGACGCCGAGT
TGTACATCACAAACTACCGACCCGTTGCTCTAAAGGAAATGATTAAGGTG
GGCACAGTAATTTATGACCACCGTTTGAAATTAGTTCGAGATGTGGCCAA
GCAAAAGGTACTTTTGAAAGGCCTGGAAAACGATTCCGATGATGTGGCCC
TTCTCTGCATAGAGACGTTGCTGGAGGGATGCTCGGTAATCGTGTTCTGC
CCCTCGAAAGATTGGTGCGAGAACCTGGCCGTTCAATTGGCCACCGCAAT
CCATGTCCAAATCAAATCTGAAACAGTGCTGGGCCAGCGATTGAGAACAA
ATCTAAATCCGAGGGCCATTGCAGAAGTGAAGCAACAACTCAGGGACATT
CCCACAGGTCTCGATGGGGTCATGTCGAAGGCGATCACCTACGCCTGCGC
GTTTCACCACGCCGGCCTAACTACGGAGGAGCGGGACATTATTGAAGCCT
CGTTTAAGGCAGGAGCACTGAAGGTTCTAGTCGCCACCAGCACACTGAGT
TCGGGAGTGAATCTGCCCGCTCGGCGCGTCCTGATACGCTCGCCATTATT
TGGGGGCAAGCAAATGAGTTCCCTAACGTACCGCCAGATGATCGGACGAG
CTGGACGCATGGGAAAGGATACGCTGGGTGAGTCTATTCTCATCTGCAAC
GAGATCAATGCCCGAATGGGAAGAGACCTGGTCGTATCGGAGCTGCAGCC
CATTACTTCCTGCCTCGATATGGACGGAAGCACCCACTTGAAGCGCGCTC
TACTCGAGGTAATTTCTTCTGGTGTAGCGAACACCAAAGAAGACATCGAC
TTCTTCGTGAATTGTACTCTGCTGAGTGCCCAAAAGGCCTTCCACGCAAA
GGAGAAACCACCCGATGAGGAATCGGACGCCAACTACATTAACGATGCCC
TCGACTTTCTTGTGGAGTACGAGTTCGTTCGCCTGCAAAGGAACGAGGAA
AGGGAGACAGCGGTCTATGTGGCCACTCGTCTCGGTGCCGCCTGTCTGGC
TTCCTCTATGCCGCCCACCGACGGCCTCATTCTTTTTGCGGAACTCCAGA
AATCTCGTCGCTCCTTCGTCCTAGAGTCAGAACTGCATGCTGTTTACCTA
GTAACGCCCTATTCTGTCTGCTACCAACTTCAAGATATCGACTGGCTGCT
GTATGTGCATATGTGGGAAAAGTTAAGTTCGCCCATGAAAAAAGTGGGCG
AGCTTGTTGGAGTCAGGGACGCCTTTCTCTACAAAGCGCTGCGTGGTCAA
ACAAAACTAGACTACAAGCAAATGCAAATACATAAGCGTTTCTACATAGC
TCTGGCTCTGGAGGAACTGGTAAACGAAACACCCATAAACGTCGTGGTCC
ACAAGTATAAGTGCCACCGAGGAATGCTACAGAGTCTGCAGCAAATGGCC
TCGACCTTTGCAGGCATTGTTACTGCTTTCTGCAATTCTCTGCAGTGGTC
CACACTCGCCCTGATCGTGTCCCAATTTAAGGATCGTCTCTTCTTTGGCA
TTCACAGGGATCTTATCGATCTGATGCGAATACCCGATCTGTCGCAGAAA
CGAGCTCGTGCTCTCTTTGATGCTGGCATCACCAGTTTGGTAGAGCTAGC
GGGCGCTGATCCCGTAGAATTGGAAAAGGTGCTCTATAACTCAATCAGCT
TCGACTCTGCAAAGCAACACGACCACGAGAACGCGGATGAAGCGGCCAAG
CGAAATGTAGTTAGAAATTTCTATATCACAGGCAAGGCGGGGATGACAGT
GAGCGAGGCTGCCAAACTACTGATTGGTGAAGCTCGACAATTTGTTCAGC
ACGAGATCGGACTGGGCACAATTAAATGGACCCAAACTCAGGCGGGAGTG
GAAATAGCTTCGAGGGCAATACACGATGGCGGGGAGGTAGACCTCCACAT
GTCCCTGGAGGAGGAGCAGCCGCCAGTAAAGAGGAAATTGTCCATCGAAG
AAAATGGCACAGCCAATTCACAAAAAAATCCCAGACTCGAAACAGTAGTG
GACACACAGCGAGGCTATAAAGTTGATAAGAATATTGCTAATCAAAGCAA
GATGAACCCGAATCTTAAAGAAATCGATGCCCAAAATAAGGCGCGAAGGA
ATTCAACTGCACACATGGATAACCTAAACCCGATTAGCAATGACCCTTGT
CAGAACAACGTAAACGTAAAAACGGCACAACCCATAATATCCAATTTGAA
TGACATCCAGAAACAAGGTTCTCAGATTGAAAAGATGAAAATCAATCCAG
CAACTGTGGTGTGTAGTCCACAATTAGCAAATGAAGAAAAACCGAGTACC
AGTCAAAGTGCTAGAAGGAAGCTCGTTAATGAGGGAATGGCCGAACGCCG
CAGGGTCGCTTTAATGAAGATTCAGCAACGCACCCAAAAAGAGAACCAGT
CTAAGGATCAGCCAATACAGGCGTCGAGGTCTAACCAACTTTCAAGTCCG
GTTAATAGAACACCCGCAAATCGATGGACACAATCGGAAAACCCAAACAA
TGAGATGAACAATAGTCAACTGCCCCGCAGAAATCCACGAAATCAATCAC
CAGTACCCAATGCAAACCGCACTGCGTCAAGGAAGGTTTCCAACGCAGAG
GAGGATTTGTTTATGGCAGACGATTCCTTTATGCTGAATACCGGTCTAGC
CGCTGCTCTCACGGCCGCTGAGAGCAAAATTGCCTCTTGCACGGAGGCGG
ACGTGATACCTAGCTCGCAACCTAAGGAGCCGGAAGTGATCGGTGCACTG
ACTCCACATGCATCCAGACTGAAGCGTTCCGACCAGTTGCGTTCACAGCG
CATACAAAGTCCCAGCCCCACCCCGCAACGTGAAATCGAAATTGATTTGG
AATCGAAAAACGAATCCAATGGGGTCTCCTCTATGGAAATCTCGGACATG
TCTATGGAGAACCCACTCATGAAAAATCCTTTACATCTAAATGCCTCGCA
CATTATGAGCTGTTCGAAAGTCGATGAAACTGCGTCGAGTTTCTCTTCTA
TAGATATAATCGATGTGTGTGGCCACCGGAATGCGTTTCAAGCTGCTATC
ATCGAGATCAATAACGCCACGCGTTTGGGATTTAGCGTTGGCCTGCAGGC
TCAAGCGGGCAAACAGAAGCCGCTAATTGGATCCAACCTCTTGATCAATC
AAGTTGCGGCGGCCGAGAACCGGGAGGCGGCTGCCAGGGAACGTGTGCTA
TTCCAAGTGGACGACACCAACTTCATCTCTGGTGTGTCTTTCTGTCTTGC
GGACAATGTTGCCTACTATTGGAATATGCAAATTGACGAACGTGCAGCAT
ATCAGGGAGTGCCCACCCCTCTCAAGGTGCAGGAATTGTGCAACCTGATG
GCTCGAAAGGATCTCACGCTGGTCATGCACGACGGAAAGGAGCAGCTTAA
GATGCTGCGCAAAGCGATTCCGCAGCTAAAAAGGATTAGCGCCAAGCTGG
AGGATGCCAAGGTCGCAAACTGGCTGCTGCAGCCGGACAAAACTGTGAAT
TTTCTCAATATGTGCCAGACATTCGCCCCGGAATGCACTGGCCTTGCGAA
TCTCTGTGGCAGTGGTCGTGGTTATAGCAGCTACGGGCTTGATACCTCCA
GTGCCATTTTGCCGAGGATTAGGACGGCCATCGAATCCTGCGTAACGCTG
CACATACTCCAGGGACAGACTGAGAACCTAAGCAGGATTGGCAATGGTGA
CTTACTTAAGTTTTTCCACGATATCGAAATGCCCATTCAATTGACTCTTT
GTCAAATGGAGCTTGTGGGCTTTCCCGCCCAGAAGCAGCGACTCCAACAG
CTTTATCAGCGCATGGTGGCCGTTATGAAGAAAGTGGAAACAAAGATTTA
TGAGCAGCATGGTTCCCGTTTCAATCTGGGCTCGTCACAAGCTGTTGCCA
AGGTGCTGGGACTCCACCGGAAAGCAAAAGGACGAGTTACCACCTCACGC
CAGGTGCTGGAGAAGTTGAACTCGCCCATTTCGCATTTGATACTAGGCTA
TCGAAAGCTGTCTGGGCTCTTGGCCAAAAGCATTCAGCCGCTAATGGAGT
GCTGCCAGGCAGACAGAATTCATGGCCAGAGCATTACATATACGGCAACG
GGTCGTATTTCCATGACGGAGCCGAACCTGCAAAATGTCGCCAAAGAATT
CAGCATACAAGTGGGCTCTGATGTGGTCCACATATCCTGTAGGTCACCAT
TCATGCCCACGGATGAGAGCCGATGTCTTTTGTCGGCTGACTTCTGTCAG
CTGGAGATGCGGATCCTTGCCCACATGTCTCAGGATAAGGCTCTGTTGGA
GGTGATGAAATCGTCACAGGACCTGTTCATCGCAATTGCAGCGCATTGGA
ACAAAATCGAAGAGTCCGAAGTGACGCAGGACCTCCGCAACAGCACCAAG
CAGGTGTGCTACGGAATCGTCTACGGCATGGGCATGCGGTCCCTGGCCGA
GTCGTTAAACTGCAGTGAGCAGGAGGCGCGGATGATATCCGATCAGTTTC
ACCAGGCGTACAAGGGTATTCGCGATTACACCACGAGGGTGGTCAATTTC
GCACGCAGCAAGGGATTTGTTGAGACCATTACTGGACGGCGACGGTATTT
GGAAAATATCAACAGTGATGTGGAGCATCTAAAAAATCAGGCCGAGCGCC
AGGCCGTTAACTCCACCATCCAAGGATCGGCTGCGGATATTGCGAAGAAC
GCTATTCTGAAGATGGAAAAGAACATTGAACGTTATCGCGAAAAGCTGGC
ATTGGGTGACAATTCAGTTGACCTGGTAATGCACCTACATGACGAACTCA
TTTTCGAGGTGCCAACGGGAAAGGCCAAAAAAATAGCCAAAGTCCTTAGC
CTCACCATGGAGAACTGCGTGAAACTCAGCGTGCCACTCAAGGTGAAGCT
GAGGATCGGACGCAGTTGGGGTGAATTTAAGGAAGTTAGCGTGGCAAGCT
TTCTAGACCAT
BO28634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mus308-RA | 6180 | CG6019-PA | 1..6177 | 17..6193 | 30885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mus308-RA | 6420 | CG6019-RA | 93..6269 | 17..6193 | 30885 | 100 | Plus |
CG12279-RA | 601 | CG12279-RA | 457..601 | 6193..6049 | 725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12707282..12709506 | 4762..2538 | 11125 | 100 | Minus |
3R | 32079331 | 3R | 12710615..12712207 | 1609..17 | 7965 | 100 | Minus |
3R | 32079331 | 3R | 12706048..12706963 | 5885..4970 | 4580 | 100 | Minus |
3R | 32079331 | 3R | 12709565..12710121 | 2538..1982 | 2785 | 100 | Minus |
3R | 32079331 | 3R | 12710176..12710551 | 1981..1606 | 1880 | 100 | Minus |
3R | 32079331 | 3R | 12705674..12705981 | 6193..5886 | 1540 | 100 | Minus |
3R | 32079331 | 3R | 12707021..12707229 | 4970..4762 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:20:01 has no hits.
BO28634.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-28 13:15:07 Download gff for
BO28634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus308-RA | 93..6269 | 17..6195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:54:34 Download gff for
BO28634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus308-RA | 93..6269 | 17..6195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:57:54 Download gff for
BO28634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus308-RA | 93..6269 | 17..6195 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:57:54 Download gff for
BO28634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12710176..12710549 | 1608..1981 | 100 | <- | Minus |
3R | 12709565..12710121 | 1982..2538 | 100 | <- | Minus |
3R | 12705672..12705981 | 5886..6195 | 99 | <- | Minus |
3R | 12706048..12706962 | 4971..5885 | 100 | <- | Minus |
3R | 12707021..12707228 | 4763..4970 | 100 | <- | Minus |
3R | 12707282..12709505 | 2539..4762 | 100 | <- | Minus |
3R | 12710617..12712207 | 17..1607 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:54:34 Download gff for
BO28634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8535898..8536271 | 1608..1981 | 100 | <- | Minus |
arm_3R | 8535287..8535843 | 1982..2538 | 100 | <- | Minus |
arm_3R | 8531394..8531703 | 5886..6195 | 99 | <- | Minus |
arm_3R | 8531770..8532684 | 4971..5885 | 100 | <- | Minus |
arm_3R | 8532743..8532950 | 4763..4970 | 100 | <- | Minus |
arm_3R | 8533004..8535227 | 2539..4762 | 100 | <- | Minus |
arm_3R | 8536339..8537929 | 17..1607 | 100 | | Minus |
BO28634.pep Sequence
Translation from 16 to 6211
> BO28634.pep
MAFSQSFNFGNSTLMALEKGMQADDKENAQPGNGNIQVQSAGNEVNSEIQ
EINSEFFRDEFSYEVNQAHKPAEQSVVNVSQVQQHMAVVSNQDSEDQSRS
SALNDQICTQSSFEGEDAGADAVLDQPNLDENSFLCPAQDEEASEQLKED
ILHSHSVLAKQEFYQEISQVTQNLSSMSPNQLRVSPNSSRIREAMPERPA
MPLDLNTLRSISAWNLPMSIQAEYKKKGVVDMFDWQVECLSKPRLLFEHC
NLVYSAPTSAGKTLVSEILMLKTVLERGKKVLLILPFISVVREKMFYMQD
LLTPAGYRVEGFYGGYTPPGGFESLHVAICTIEKANSIVNKLMEQGKLET
IGMVVVDEVHLISDKGRGYILELLLAKILYMSRRNGLQIQVITMSATLEN
VQLLQSWLDAELYITNYRPVALKEMIKVGTVIYDHRLKLVRDVAKQKVLL
KGLENDSDDVALLCIETLLEGCSVIVFCPSKDWCENLAVQLATAIHVQIK
SETVLGQRLRTNLNPRAIAEVKQQLRDIPTGLDGVMSKAITYACAFHHAG
LTTEERDIIEASFKAGALKVLVATSTLSSGVNLPARRVLIRSPLFGGKQM
SSLTYRQMIGRAGRMGKDTLGESILICNEINARMGRDLVVSELQPITSCL
DMDGSTHLKRALLEVISSGVANTKEDIDFFVNCTLLSAQKAFHAKEKPPD
EESDANYINDALDFLVEYEFVRLQRNEERETAVYVATRLGAACLASSMPP
TDGLILFAELQKSRRSFVLESELHAVYLVTPYSVCYQLQDIDWLLYVHMW
EKLSSPMKKVGELVGVRDAFLYKALRGQTKLDYKQMQIHKRFYIALALEE
LVNETPINVVVHKYKCHRGMLQSLQQMASTFAGIVTAFCNSLQWSTLALI
VSQFKDRLFFGIHRDLIDLMRIPDLSQKRARALFDAGITSLVELAGADPV
ELEKVLYNSISFDSAKQHDHENADEAAKRNVVRNFYITGKAGMTVSEAAK
LLIGEARQFVQHEIGLGTIKWTQTQAGVEIASRAIHDGGEVDLHMSLEEE
QPPVKRKLSIEENGTANSQKNPRLETVVDTQRGYKVDKNIANQSKMNPNL
KEIDAQNKARRNSTAHMDNLNPISNDPCQNNVNVKTAQPIISNLNDIQKQ
GSQIEKMKINPATVVCSPQLANEEKPSTSQSARRKLVNEGMAERRRVALM
KIQQRTQKENQSKDQPIQASRSNQLSSPVNRTPANRWTQSENPNNEMNNS
QLPRRNPRNQSPVPNANRTASRKVSNAEEDLFMADDSFMLNTGLAAALTA
AESKIASCTEADVIPSSQPKEPEVIGALTPHASRLKRSDQLRSQRIQSPS
PTPQREIEIDLESKNESNGVSSMEISDMSMENPLMKNPLHLNASHIMSCS
KVDETASSFSSIDIIDVCGHRNAFQAAIIEINNATRLGFSVGLQAQAGKQ
KPLIGSNLLINQVAAAENREAAARERVLFQVDDTNFISGVSFCLADNVAY
YWNMQIDERAAYQGVPTPLKVQELCNLMARKDLTLVMHDGKEQLKMLRKA
IPQLKRISAKLEDAKVANWLLQPDKTVNFLNMCQTFAPECTGLANLCGSG
RGYSSYGLDTSSAILPRIRTAIESCVTLHILQGQTENLSRIGNGDLLKFF
HDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGS
RFNLGSSQAVAKVLGLHRKAKGRVTTSRQVLEKLNSPISHLILGYRKLSG
LLAKSIQPLMECCQADRIHGQSITYTATGRISMTEPNLQNVAKEFSIQVG
SDVVHISCRSPFMPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSS
QDLFIAIAAHWNKIEESEVTQDLRNSTKQVCYGIVYGMGMRSLAESLNCS
EQEARMISDQFHQAYKGIRDYTTRVVNFARSKGFVETITGRRRYLENINS
DVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIERYREKLALGDNS
VDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENCVKLSVPLKVKLRIGRS
WGEFKEVSVASFLDH
BO28634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mus308-PA | 2059 | CG6019-PA | 1..2059 | 1..2059 | 10452 | 100 | Plus |
mus301-PA | 1051 | CG7972-PA | 99..1008 | 66..956 | 820 | 28.5 | Plus |
l(3)72Ab-PA | 2142 | CG5931-PA | 498..891 | 251..648 | 307 | 27.4 | Plus |
CG5205-PA | 2183 | CG5205-PA | 1354..1718 | 251..629 | 287 | 25.6 | Plus |
l(2)35Df-PA | 1055 | CG4152-PA | 168..596 | 251..667 | 270 | 25.9 | Plus |
CG5205-PA | 2183 | CG5205-PA | 504..877 | 251..626 | 232 | 24.8 | Plus |