BO28635.complete Sequence
1816 bp assembled on 2011-07-13
GenBank Submission: KX800030
> BO28635.complete
GAAGTTATCAGTCGACATGTTGCCGGTAATCCTCATAGCCTGCCTGGCCC
AGCTGGTACTGGCTCAGGCGGATCTTAAAGATCTGGATGGACCCAATATC
TGCAAAAGAAGAGAACTATATAACGTAGACGTTGTCTACACAGAACTGCA
ATCGTTCCAGGAACGGGGCTCCACCTGGTGCGTCACATTCCCGCCGAGGT
GCTCCACCTATCGCATTAAACACCGAGTGGTCAACAAAACCAAGACGATT
GCAAAGAACCGTATTGTGAGGGACTGTTGTGATGGCTACATCGCGAGCGC
AGGAGAATGCGTGCCGCATTGTTCGGAACCCTGCCAGCACGGTAGATGCA
TCTCCCCGGAGAAGTGCAAGTGTGATCATGGTTACGGAGGACCCGCCTGC
GATATAATTTGCAGATGCCTGAATAACTCCTCCTGCGACCCCGATTCCGG
TAACTGCATCTGCTCAGCCGGTTGGACTGGCGCCGACTGTGCGGAACCCT
GCCCACCTGGATTCTACGGCATGGAATGCAAGGAACGGTGCCCGGAGATC
CTCCATGGCAACAAGAGCTGCGATCACATCACAGGTGAAATTCTCTGCCG
CACGGGTTACATAGGTCTCACCTGCGAGCACCCATGTCCTGCTGGACTCT
ACGGACCCGGCTGCAAGCTCAAGTGCAATTGCGAGCACGGCGGCGAGTGC
AACCACGTTACAGGCCAGTGCCAGTGCCTGCCAGGGTGGACAGGTTCCAA
CTGCAACGAGTCCTGTCCCACAGACACCTACGGACAAGGATGCGCCCAGC
GGTGCCGCTGCGTGCACCACAAGGTTTGCCGCAAGGCCGACGGTATGTGC
ATCTGCGAAACCGGCTGGTCGGGCACCCGGTGCGATGAGGTCTGTCCGGA
GGGATTCTACGGCGAGCACTGCATGAATACCTGTGCCTGTCCGTCGGCCA
ATTTCCAGTGCCATGCGGCCCACGGTTGTGTGTGCAGGAGTGGCTACACC
GGCGATAACTGCGACGAGCTAATCGCCTCTCAACGTATTGCAGACCAAAG
CGAAAATTCGAGCCGGGCGAGTGTAGCTCTGACCTTAGTCCTGATGACCC
TGTTTGCGTGCATAATCTTCGCAGTGTTCATTTACTACCGCCGACGTGTG
TCCAATCTAAAAACCGAAATCGCCCATGTACACTACACCCATGATACGAA
TCCCCCGAGCTGGCCGCCCAACCACAACTTCGACAATCCCGTGTACGGCA
TGCAGGCGGAAACGCGTCTCCTGCCCAACAATATGCGTTCCAAGATGAAC
AACTTTGACCAGAGGAGCACGATGAGCACGGACTACGGCGATGACTGCAA
TGCCAGTGGCAGGGTGGGTAGCTATTCGATCAACTACAACCACGACCTGC
TAACGAAGAACTTGAACGCGGACCGGACCAATCCGATTGTGTACAACGAA
TCCCTCAAAGAGGAGCATGTCTACGACGAGATCAAGCACAAGGAGGGCTA
CAAGGATCCCGTGAAAATATATAGCAAGATTTTGTTTCCCGAGGATGAAT
ACGATCACCTGGACTACTCACGACCCAGCACCTCGCAGAAGCCGCACTAC
CACCGCATGAACGACGCCATGCTCAACATCAACCAGGACGAGGAGAAGCC
CAGCAACGTGAAGAACATGACTGTGCTGCTGAACAAACCGCTGCCGCCCA
CGGAACCGGAGCCACAACACGAGTGCTTCGACAACACGAACACCAACCTG
GACAACGTGTCGACGGCGTCGCCTAGTTCCAGTCCGAAATTTCTAAAGGC
AAGCTTTCTAGACCAT
BO28635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drpr-RA | 1785 | CG2086-PA | 1..1782 | 17..1798 | 8910 | 100 | Plus |
| drpr-RC | 1587 | CG2086-PC | 1..1495 | 17..1511 | 7475 | 100 | Plus |
| drpr-RE | 3129 | CG2086-PE | 1729..3126 | 401..1798 | 6960 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drpr-RA | 3206 | CG2086-RA | 716..2498 | 16..1798 | 8915 | 100 | Plus |
| drpr-RC | 3298 | CG2086-RC | 716..2211 | 16..1511 | 7480 | 100 | Plus |
| drpr-RE | 4435 | CG2086-RE | 2445..3842 | 401..1798 | 6960 | 99.9 | Plus |
| drpr-RC | 3298 | CG2086-RC | 2451..2705 | 1544..1798 | 1275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1717379..1717880 | 1058..557 | 2510 | 100 | Minus |
| 3L | 28110227 | 3L | 1717003..1717308 | 1364..1059 | 1530 | 100 | Minus |
| 3L | 28110227 | 3L | 1716303..1716557 | 1798..1544 | 1275 | 100 | Minus |
| 3L | 28110227 | 3L | 1723770..1723933 | 281..118 | 820 | 100 | Minus |
| 3L | 28110227 | 3L | 1717946..1718103 | 558..401 | 760 | 98.7 | Minus |
| 3L | 28110227 | 3L | 1716797..1716944 | 1511..1364 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 1723580..1723706 | 407..281 | 635 | 100 | Minus |
| 3L | 28110227 | 3L | 1723992..1724093 | 117..16 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:34:35 has no hits.
BO28635.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 13:15:56 Download gff for
BO28635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drpr-RA | 708..2484 | 22..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:38 Download gff for
BO28635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drpr-RA | 722..2498 | 22..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:36:51 Download gff for
BO28635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drpr-RA | 722..2498 | 22..1800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:36:51 Download gff for
BO28635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1716797..1716943 | 1365..1511 | 100 | <- | Minus |
| 3L | 1717003..1717308 | 1059..1364 | 100 | <- | Minus |
| 3L | 1716301..1716556 | 1545..1800 | 99 | <- | Minus |
| 3L | 1716675..1716707 | 1512..1544 | 100 | <- | Minus |
| 3L | 1717379..1717879 | 558..1058 | 100 | <- | Minus |
| 3L | 1717947..1718096 | 408..557 | 100 | <- | Minus |
| 3L | 1723580..1723705 | 282..407 | 100 | <- | Minus |
| 3L | 1723770..1723933 | 118..281 | 100 | <- | Minus |
| 3L | 1723992..1724087 | 22..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:38 Download gff for
BO28635.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1716797..1716943 | 1365..1511 | 100 | <- | Minus |
| arm_3L | 1716301..1716556 | 1545..1800 | 99 | <- | Minus |
| arm_3L | 1716675..1716707 | 1512..1544 | 100 | <- | Minus |
| arm_3L | 1717003..1717308 | 1059..1364 | 100 | <- | Minus |
| arm_3L | 1717379..1717879 | 558..1058 | 100 | <- | Minus |
| arm_3L | 1717947..1718096 | 408..557 | 100 | <- | Minus |
| arm_3L | 1723580..1723705 | 282..407 | 100 | <- | Minus |
| arm_3L | 1723770..1723933 | 118..281 | 100 | <- | Minus |
| arm_3L | 1723992..1724087 | 22..117 | 100 | | Minus |
BO28635.pep Sequence
Translation from 16 to 1816
> BO28635.pep
MLPVILIACLAQLVLAQADLKDLDGPNICKRRELYNVDVVYTELQSFQER
GSTWCVTFPPRCSTYRIKHRVVNKTKTIAKNRIVRDCCDGYIASAGECVP
HCSEPCQHGRCISPEKCKCDHGYGGPACDIICRCLNNSSCDPDSGNCICS
AGWTGADCAEPCPPGFYGMECKERCPEILHGNKSCDHITGEILCRTGYIG
LTCEHPCPAGLYGPGCKLKCNCEHGGECNHVTGQCQCLPGWTGSNCNESC
PTDTYGQGCAQRCRCVHHKVCRKADGMCICETGWSGTRCDEVCPEGFYGE
HCMNTCACPSANFQCHAAHGCVCRSGYTGDNCDELIASQRIADQSENSSR
ASVALTLVLMTLFACIIFAVFIYYRRRVSNLKTEIAHVHYTHDTNPPSWP
PNHNFDNPVYGMQAETRLLPNNMRSKMNNFDQRSTMSTDYGDDCNASGRV
GSYSINYNHDLLTKNLNADRTNPIVYNESLKEEHVYDEIKHKEGYKDPVK
IYSKILFPEDEYDHLDYSRPSTSQKPHYHRMNDAMLNINQDEEKPSNVKN
MTVLLNKPLPPTEPEPQHECFDNTNTNLDNVSTASPSSSPKFLKASFLDH
BO28635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drpr-PA | 594 | CG2086-PA | 1..594 | 1..594 | 3379 | 100 | Plus |
| drpr-PD | 613 | CG2086-PD | 1..613 | 1..594 | 3348 | 96.7 | Plus |
| drpr-PC | 528 | CG2086-PC | 1..498 | 1..498 | 2860 | 100 | Plus |
| drpr-PE | 1042 | CG2086-PE | 521..1042 | 61..594 | 2698 | 90.3 | Plus |
| drpr-PB | 1031 | CG2086-PB | 521..1031 | 61..594 | 2621 | 88.2 | Plus |
| drpr-PE | 1042 | CG2086-PE | 1..347 | 1..336 | 1211 | 62.3 | Plus |
| drpr-PE | 1042 | CG2086-PE | 274..519 | 98..333 | 528 | 38.1 | Plus |
