BO28638.complete Sequence
1849 bp assembled on 2011-08-04
GenBank Submission: KX794875
> BO28638.complete
GAAGTTATCAGTCGACATGGCGTGGAAAATGGGAGGAAACCGGGCCGCAA
CGCTGGCGTTGCTCTTCGCCAGCAGTTTGCTGCTGCTGAGTGCGGCCAAT
GCCGCCGATTTGGACACGGAGTCGGACGACTTCGAGGATGGTTATGTGGA
GGATGTGCAGGAGGAGCCCGCCGTCATCGGTGGCGATGAGAAGCTGGCCT
ACGAGAGCCCGGTTATCGATGCCAAGAAGTTCCACTTCGCGGATCACTTC
GACGACGTGGAGGAGTCCAGGAAGAGGTGGGTGCTGTCGCAGGCCAAGAA
GGACGACATCGCCGAGGAGATCTCCAAGTACGACGGCATCTGGAACTGGG
AGTCGCCGCAGCGCATCGTTTGGGCTAACGACTTGGGTCTGGTGCTCAAG
TCGAAGGCCAAACACGCGGCCATAGCCGCCCCCCTCCGCAAACCGTTCGA
GTTCAAGTCGGACAAGCCGCTGGTGGTGCAGTACGAGGTCACGTTGCAGG
AGGGTCAGGAGTGCGGTGGCTCGTATCTGAAGCTTTTGTCCGCCGGAAAA
GACACGGAGCAACTAAAAGCGTTCAATGACAAGACACCCTATACCATCAT
GTTTGGACCGGACAAGTGCGGCAACGATGTGAAAATGCACTTCATATTCC
GGCACGTCAATCCAATTAATGGCACCATCACCGAGAAGCACTGCAACAAG
CCAAAGAACCGTTTGGAAGAGCCATTCAAGGACAAGCTACCCCATCTCTA
CCAGCTGGTGGTCCGTCCCGATAACAGCTTTGAGATTCGCGTTGACCACA
AGATCATCAATGAGGGTTCCCTGCTAACCGATTTCAAGCCACCAGTCAAC
CCGCCGGCAGAGATCGACGACCCCAATGACCACAAGCCCGAATCGTGGGA
TGAGCGAGAGAAGATCCCAGATCCCACTGCCCACAAGCCCGAGGATTGGG
ATGAGGATGCTCCACCCCAGTTGCCCGATACCGATGCCGTCATGCCCAAT
GGCTGGCTCGAAGATGAGCCCGACATGATTTTCGATCCAACTGCCACCAA
ACCCGAGGATTGGGATGCCGAAATCGATGGCGAGTGGGAGGCTCCATTGG
TGGACAATCCAGTGTGCGAGAAGGCTCCCGGCTGTGGCAAGTGGAAGGCT
CCGCTCATCCCCAATCCCAACTACAAGGGCAAGTGGCGTGCACCAATGAT
CGAGAACCCCAACTACCAGGGCAAGTGGGCACCCAGGAAGATTCCCAATC
CAGACTTCTTTGAGGATCTGAAGCCCTTCCAAATGACGCCCATCAGCGCT
GTGGGTCTGGAACTGTGGTCCATGTCCAGCGATATTCTCTTCGACAACCT
AATCATCACGGACGACGTGGAGGTGGCCCGTGACTTTGCCGCCAACAGCT
TCGACATCAAGCGTCGCTACATCGATCGTGAATCGGACTCATTCGTGAAT
AAGGTAGTCGAGCTAGCCAAGGCCAATCCCTCGATCTGGGGCATTGGCTT
GGTGGCCATTGTGGCGCTGGTTGCCCTCACCATCTACTGTAGATTTGGTA
CCGCTAAGAGTCAGGACTCGGCTGCCAAAAAGGCTGCTGCCGAGGCCAAG
AAGTCCGACGATCCTCAGCCCGACGATGAGCCCGAGGCCGAGGAGGAGAG
CGACGAAAGGGCCGCTGGCGATACCAGCAAGGAGAGCACACCGCTGTCCG
CTAGTCCCAAGAAGAACCAAAAGTCTGATTTAGATGATAACGAAGAGGAG
TCCAAGGCGGCGGAGAGCCGAGAGCCCGCACAGACTGAGGAATCTAACAC
AAAAACACGCAAGCGTCAAGCGCGCAAGGAGGCAAGCTTTCTAGACCAT
BO28638.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cnx99A-RD | 1818 | CG11958-PD | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| Cnx99A-RB | 1818 | CG11958-PB | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| Cnx99A-RA | 1818 | CG11958-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cnx99A-RD | 2092 | CG11958-RD | 225..2039 | 17..1831 | 9075 | 100 | Plus |
| Cnx99A-RB | 2623 | CG11958-RB | 225..2039 | 17..1831 | 9075 | 100 | Plus |
| Cnx99A-RA | 2615 | CG11958-RA | 217..2031 | 17..1831 | 9075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16523638..16525138 | 1648..145 | 5035 | 89.3 | Minus |
| 3R | 32079331 | 3R | 29316923..29317511 | 1294..706 | 2945 | 100 | Minus |
| X | 23542271 | X | 12177677..12178607 | 959..17 | 2880 | 87.3 | Minus |
| X | 23542271 | X | 12177115..12177655 | 1575..1020 | 1785 | 88.5 | Minus |
| 3R | 32079331 | 3R | 29318273..29318617 | 500..156 | 1725 | 100 | Minus |
| 3R | 32079331 | 3R | 29315944..29316171 | 1790..1563 | 1140 | 100 | Minus |
| 3R | 32079331 | 3R | 29319230..29319374 | 161..17 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 29316719..29316860 | 1436..1295 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 29317835..29317970 | 706..571 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 29316236..29316370 | 1565..1431 | 660 | 99.3 | Minus |
| X | 23542271 | X | 20875117..20875303 | 85..271 | 500 | 84.5 | Plus |
| X | 23542271 | X | 16523368..16523479 | 1750..1639 | 440 | 92.9 | Minus |
| 3R | 32079331 | 3R | 29318069..29318142 | 571..498 | 370 | 100 | Minus |
| 3R | 32079331 | 3R | 29315838..29315881 | 1831..1788 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:09:46 has no hits.
BO28638.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 17:43:44 Download gff for
BO28638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnx99A-RB | 241..2055 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:44 Download gff for
BO28638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnx99A-RA | 217..2031 | 17..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:46 Download gff for
BO28638.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cnx99A-RA | 217..2031 | 17..1833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 02:19:46 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 04:46:44 has no hits.
BO28638.pep Sequence
Translation from 16 to 1849
> BO28638.pep
MAWKMGGNRAATLALLFASSLLLLSAANAADLDTESDDFEDGYVEDVQEE
PAVIGGDEKLAYESPVIDAKKFHFADHFDDVEESRKRWVLSQAKKDDIAE
EISKYDGIWNWESPQRIVWANDLGLVLKSKAKHAAIAAPLRKPFEFKSDK
PLVVQYEVTLQEGQECGGSYLKLLSAGKDTEQLKAFNDKTPYTIMFGPDK
CGNDVKMHFIFRHVNPINGTITEKHCNKPKNRLEEPFKDKLPHLYQLVVR
PDNSFEIRVDHKIINEGSLLTDFKPPVNPPAEIDDPNDHKPESWDEREKI
PDPTAHKPEDWDEDAPPQLPDTDAVMPNGWLEDEPDMIFDPTATKPEDWD
AEIDGEWEAPLVDNPVCEKAPGCGKWKAPLIPNPNYKGKWRAPMIENPNY
QGKWAPRKIPNPDFFEDLKPFQMTPISAVGLELWSMSSDILFDNLIITDD
VEVARDFAANSFDIKRRYIDRESDSFVNKVVELAKANPSIWGIGLVAIVA
LVALTIYCRFGTAKSQDSAAKKAAAEAKKSDDPQPDDEPEAEEESDERAA
GDTSKESTPLSASPKKNQKSDLDDNEEESKAAESREPAQTEESNTKTRKR
QARKEASFLDH
BO28638.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cnx99A-PD | 605 | CG11958-PD | 1..605 | 1..605 | 3232 | 100 | Plus |
| Cnx99A-PB | 605 | CG11958-PB | 1..605 | 1..605 | 3232 | 100 | Plus |
| Cnx99A-PA | 605 | CG11958-PA | 1..605 | 1..605 | 3232 | 100 | Plus |
| Cnx99A-PE | 604 | CG11958-PE | 1..604 | 1..605 | 3035 | 93.9 | Plus |
| Cnx14D-PA | 639 | CG9906-PA | 1..639 | 1..605 | 2443 | 72.8 | Plus |
