BO28646.complete Sequence
1879 bp assembled on 2011-08-04
GenBank Submission: KX796618
> BO28646.complete
GAAGTTATCAGTCGACATGGAGTGTTTCAATGCGGAAATACCAGCTGACG
GAGTGGTTAATAGCATAGAGACCGAAGAGATTTCGGAAAATGTAGTGAAA
GCTGATGAAACCACGCTGGCAAATGGTGAGGATGAAGCCGGAAAAGCCGG
CGAGGAATATGCTTACTTGGAGCGAAATGAATTCACTTCGGAAATATTCA
AAGTTGAAGTGAAGAACATGGGATATTTCGGTATTGGGGAGTTTAAGAAG
CTTTTGAGAAACACCCTCAAATTTGACGTGACCAAAATCAAGGCTCCAAC
TCGAAAAGAGTTCGCCTTTGTGTGCTTCCGCAGTCAGGAGGATCAACAAA
GGGCCTTGGAGATCCTGAATGGATACAAATGGAAGGGAAAGGTGTTGAAG
GCTCATGTTGCCAAGGCCTCGGCCGATCCTCTACAGAAAAAGCGAGCTGC
CGAGGAACAGGAGTCGGAGAGAAAGCCCAAGAAACAACGTACGGCGGTGG
AAGCCACGTGTCCTCTGTCGCACATTGCCTACGACCAGCAGATTAAACAA
AAATCCGAGGAAATGTCGGCACTTCTGGCGAAATACACCCAGGAACTTCG
GAAGGTCAATCCGCGGGCAAAGCCCCACTTGGATAAGTTCCAATTCCACG
AGGTGCTTCCCTCACCCACCGTTAATGGGTATAGAAATAAAAACGAGTTC
ACCGTGGGAAAGAACTCCGTAGGCGAAGTGGTTGTGGGCTTCAGATTGGG
CTGCTACAGCGATGGATCTGTGGAAGTAGCCGAGGTCGCAGACTTGCCAC
ATCTACCGGAGCAGGCCAAGTGGGCTGCTCGCAGTTTCCAGGACTTGGTG
AGGAAGTCCAAGTTCTTGCCCTTCAATCCGGACGGAAATATTGGCCACTT
CCGGCAGCTAATGGTGCGGTGCTCCAGTGCCACAGGTGAACTAATGCTGG
TGGCGGGCATATACTCCTCGAACTTAAGTGAAGACGAACAAGTTGAACTT
AAGCAAGAACTGAAGTCCTTCTACGAAGATCTGGCAAATGATGCTCCGTA
CAAATGCAGCTCTCTGTATTACCAAGATGTCAAGCATCGGGAAGCAGGTC
AGACGATTAATCCGGTGGAACACATTTCGGGCAGCACCCACATCACCGAT
ACCATACAGGGTCTCCAGTTTCGAATCAGCCCACTGGCCTTTTTCCAAAT
CAACACAGAAGGAGCCAACGTGTTGTATCAAAAGGCCATTGATCTAGTTG
CTCCTACTAAGGACACAACTATGTTGGATATTTGCTGTGGTACTGGCACC
ATTACCCTTGCGTTCGCCAAGCACTGCAAGAAAGTGATGGGCGTGGAGAT
CGTCCCTGATGCGATTAAGGATGCCGAGTTTAATGCGGAAGCGAATGGCA
TTAAAAATGCAAAGTTCTTTACAGGAAATGCAGATGATTTCATCAAGAGT
ATGGTGCGCGAAGCTCTCTACGATCAGGAGCCGGGTAAACCATTGGATCT
TATTGCCGTGGTGGATCCCCCCAGGGCTGGACTGCACCACCGCTCGATAG
CCGCAATTCGATCAGCCGATGCCATCAATCGTCTGGTCTACGTCTCCTGC
AATCCGCACAGTGCTAAGCGGAATTTCATCGAGCTGGCCAGACCGGAGTC
TAAGCAATACAAGGGGGAGCCATTCTACCCAAAGTCCGCTGTGGCCGTTG
ACATGTTTCCCCACACCATGCACACCGAGCTGGTCATTCTGTTCGAGCGT
GAACCTAAAACAAAGGCGGATGAGAAGTCATCGCCAGCGGAGGGAGCTGC
ACAGTCAAAGTCTGAGGCAACCGAAGAAGCTGTTAGCGAGGAGAACACCA
CATCCGTAACGGCAAGCTTTCTAGACCAT
BO28646.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3808-RA | 1848 | CG3808-PA | 1..1845 | 17..1861 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3808-RA | 2522 | CG3808-RA | 89..1933 | 17..1861 | 9225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18998946..19000243 | 1535..238 | 6490 | 100 | Minus |
| 3L | 28110227 | 3L | 18998526..18998851 | 1861..1536 | 1630 | 100 | Minus |
| 3L | 28110227 | 3L | 19000298..19000520 | 239..17 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:09:32 has no hits.
BO28646.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-04 17:43:43 Download gff for
BO28646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3808-RA | 89..1933 | 17..1863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:38 Download gff for
BO28646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3808-RA | 89..1933 | 17..1863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:41 Download gff for
BO28646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3808-RA | 89..1933 | 17..1863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:41 Download gff for
BO28646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18998522..18998851 | 1536..1863 | 99 | <- | Minus |
| 3L | 18998946..19000242 | 239..1535 | 100 | <- | Minus |
| 3L | 19000299..19000520 | 17..238 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:38 Download gff for
BO28646.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18991622..18991951 | 1536..1863 | 99 | <- | Minus |
| arm_3L | 18992046..18993342 | 239..1535 | 100 | <- | Minus |
| arm_3L | 18993399..18993620 | 17..238 | 100 | | Minus |
BO28646.pep Sequence
Translation from 16 to 1879
> BO28646.pep
MECFNAEIPADGVVNSIETEEISENVVKADETTLANGEDEAGKAGEEYAY
LERNEFTSEIFKVEVKNMGYFGIGEFKKLLRNTLKFDVTKIKAPTRKEFA
FVCFRSQEDQQRALEILNGYKWKGKVLKAHVAKASADPLQKKRAAEEQES
ERKPKKQRTAVEATCPLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPR
AKPHLDKFQFHEVLPSPTVNGYRNKNEFTVGKNSVGEVVVGFRLGCYSDG
SVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFLPFNPDGNIGHFRQLMV
RCSSATGELMLVAGIYSSNLSEDEQVELKQELKSFYEDLANDAPYKCSSL
YYQDVKHREAGQTINPVEHISGSTHITDTIQGLQFRISPLAFFQINTEGA
NVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAI
KDAEFNAEANGIKNAKFFTGNADDFIKSMVREALYDQEPGKPLDLIAVVD
PPRAGLHHRSIAAIRSADAINRLVYVSCNPHSAKRNFIELARPESKQYKG
EPFYPKSAVAVDMFPHTMHTELVILFEREPKTKADEKSSPAEGAAQSKSE
ATEEAVSEENTTSVTASFLDH
BO28646.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3808-PA | 615 | CG3808-PA | 1..615 | 1..615 | 3171 | 100 | Plus |
