Clone BO28668 Report

Search the DGRC for BO28668

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:286
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptendoA-RA
Protein status:BO28668.pep: Imported from assembly
Sequenced Size:1141

Clone Sequence Records

BO28668.complete Sequence

1141 bp assembled on 2011-07-13

GenBank Submission: KX797890

> BO28668.complete
GAAGTTATCAGTCGACATGGCTTTCGCCGGACTCAAAAAGCAGATCAACA
AGGCCAACCAGTATATGACGGAGAAGATGGGCGGTGCCGAGGGCACCAAA
CTGGACATGGACTTCATGGAGATGGAACGCAAGACGGACGTCACCGTGGA
GCTAGTGGAGGAGCTGCAGCTAAAGACGAAGGAGTTCCTGCAGCCGAATC
CAACGGCACGGGCCAAAATGGCAGCGGTCAAGGGCATCTCGAAGCTGTCC
GGACAGGCCAAGTCCAATACGTATCCGCAACCGGAGGGCCTGCTCGCGGA
ATGCATGCTGACTTATGGGAAGAAGCTCGGCGAGGACAACAGCGTGTTCG
CGCAGGCGCTCGTCGAATTCGGCGAAGCGCTGAAACAGATGGCCGACGTC
AAGTATTCGCTGGACGACAACATCAAGCAGAACTTTTTGGAGCCACTGCA
TCATATGCAGACCAAAGACCTCAAGGAGGTAATGCATCATCGCAAGAAGC
TGCAGGGCCGGCGGCTAGACTTTGACTGCAAGCGTCGCCGACAGGCCAAG
GACGATGAGATTCGTGGTGCCGAGGACAAGTTCGGTGAATCGCTCCAGCT
GGCCCAGGTGGGCATGTTCAATTTGCTCGAGAACGATACGGAGCATGTCT
CCCAGCTGGTCACCTTTGCCGAGGCACTATACGATTTTCATTCGCAATGC
GCGGATGTCCTTCGAGGCCTGCAGGAGACACTGCAGGAGAAGCGCTCCGA
GGCGGAGAGCCGGCCACGCAACGAGTTCGTGCCCAAGACGCTGCTCGATC
TGAACTTGGACGGCGGTGGCGGCGGCCTCAACGAAGATGGCACGCCGTCT
CACATTAGTTCGAGCGCCTCGCCGTTGCCCTCGCCGATGCGTTCGCCCGC
CAAGTCGATGGCCGTAACGCCGCAGCGCCAGCAGCAGCCCTGCTGCCAGG
CCCTCTACGACTTCGAGCCGGAGAATCCCGGCGAACTGGCCTTCAAGGAG
AACGACATTATCACCCTGTTGAATCGCGTCGACGACAATTGGTTCGAGGG
CGCGGTGAATGGCCGCACCGGTTACTTCCCGCAGTCGTATGTTCAGGTGC
AGGTGCCCCTGCCCAATGGCAACGCAAGCTTTCTAGACCAT

BO28668.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
EndoA-RC 1110 CG14296-PC 1..1107 17..1123 5535 100 Plus
EndoA-RB 1110 CG14296-PB 1..1107 17..1123 5535 100 Plus
EndoA-RA 1110 CG14296-PA 1..1107 17..1123 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
EndoA-RC 3913 CG14296-RC 479..1586 16..1123 5540 100 Plus
EndoA-RB 3740 CG14296-RB 658..1765 16..1123 5540 100 Plus
EndoA-RA 3561 CG14296-RA 479..1586 16..1123 5540 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18907266..18908373 16..1123 5540 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:55:23 has no hits.

BO28668.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:21 Download gff for BO28668.complete
Subject Subject Range Query Range Percent Splice Strand
endoA-RB 658..1764 17..1125 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:13 Download gff for BO28668.complete
Subject Subject Range Query Range Percent Splice Strand
endoA-RA 480..1586 17..1125 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:30:40 Download gff for BO28668.complete
Subject Subject Range Query Range Percent Splice Strand
EndoA-RA 480..1586 17..1125 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:30:40 Download gff for BO28668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18907267..18908373 17..1125 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:13 Download gff for BO28668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14732989..14734095 17..1125 99   Plus

BO28668.pep Sequence

Translation from 16 to 1141

> BO28668.pep
MAFAGLKKQINKANQYMTEKMGGAEGTKLDMDFMEMERKTDVTVELVEEL
QLKTKEFLQPNPTARAKMAAVKGISKLSGQAKSNTYPQPEGLLAECMLTY
GKKLGEDNSVFAQALVEFGEALKQMADVKYSLDDNIKQNFLEPLHHMQTK
DLKEVMHHRKKLQGRRLDFDCKRRRQAKDDEIRGAEDKFGESLQLAQVGM
FNLLENDTEHVSQLVTFAEALYDFHSQCADVLRGLQETLQEKRSEAESRP
RNEFVPKTLLDLNLDGGGGGLNEDGTPSHISSSASPLPSPMRSPAKSMAV
TPQRQQQPCCQALYDFEPENPGELAFKENDIITLLNRVDDNWFEGAVNGR
TGYFPQSYVQVQVPLPNGNASFLDH

BO28668.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
EndoA-PC 369 CG14296-PC 1..369 1..369 1919 100 Plus
EndoA-PB 369 CG14296-PB 1..369 1..369 1919 100 Plus
EndoA-PA 369 CG14296-PA 1..369 1..369 1919 100 Plus
EndoB-PB 378 CG9834-PB 21..369 10..361 234 23.6 Plus
EndoB-PA 390 CG9834-PA 21..381 10..361 222 23.4 Plus