BO28674.complete Sequence
4189 bp assembled on 2011-08-05
GenBank Submission: KX794475
> BO28674.complete
GAAGTTATCAGTCGACATGCATACGCCGCCCTTTAAATCCAATCGATTCC
CCTTCGAGGGCAGCCAGGTGCGAGTTCTGCTCTACAAAGAGGATGATACT
CGGCGATTGCTCTTCGACTCGAATGCCCTCCAGAAGGTGATGCACAAGGA
CCAATCGGCCACATCCGCATCCATATCATCGACCAGTACGAGTGGCGGGG
GAAAGTTCCTTAAGAATGAGAAGTACACATCGCTGCAGAATGGCAAGATT
CCGTCGAAGTCACATTCCAGCAATGGTAGCAATTTCATCGAGGTGTGCGC
AGAGTACGGCTATAAGCACAATCGACCCTCGGGAGCCGACATCACGCCGG
TGGGCGAAATGGTGTTTGGCTCGTTGCCGATGTCCTTTTGCGGAACGGCT
CTGAAGGTGCACTGGCTGCCGGAACCGTCCAGAATCCTGTGCTCCCAGGT
CTACCTGACGCCCACCAGTAATGGAGGATCTGGCCACTCGCCGTACTCTA
CGCTCTCCACGAATAGCCTGGCGACGCCGCGCACATCGATATGCAGCGAG
CATGGATCCATGGATGGTCTCTCGATGAACTCGTTCTCAATGCCGTTCAG
CGTGAGTGTAGGTCGGCAGATGAGCCTGACGCCACCGCTGGACGTTCCGG
CGACGCCGGCTGATCAGCAGTCACTGTCGATTCATTCGATCGACTCCAGC
GGTCCTCGATACTCATCAACATACAGCACTGCCACGGATTCGGGCTATTC
GGCCAGTGGGAGTGGCAGTGCAGCTGGAGGGGATCAGTGGTCATATCAGT
ACTCATCCACGCGCAGCAGTTTGGGCAGTGTCCTCTCGGATCAGTCGGAT
GCAATGCGGAAGCTGAGCATGGACTTGGCGTGCTATACGGGGTCTCCTTA
CCTGGACGGATTTGCCAGCGATGGCTGCCTGCAGCGAAGAATCTCGCGTA
ATTTGCGCACCTCCTTCGAGAACGAGCATTCCAAGAACGATTTTATCGGC
TTTCTTAGCGACAATTACGCATTGAATGGCCCTGTGGTAGCACCAGCAGG
AGGCGGAGCTGGAGGGGGCAGCGAAGGTGGTGGCATGGCTCCACCGCAGT
ATCGACGAGCGAGCTATTGTGCGAATGAAACGCGAAGTAATCCGGAAATG
GGCAGGAGGCAGGCCAATCTGCGGCGGCGGGCGAAACTGGGACTGGCCGT
GTGTATCTCGATGAGTGAGTCCTTCGAAGAGGAGATGGAGCTGTTTTGTA
GTGAGCATATTGCCTTGCTGGAATCTATGCTTAGTCGATTGAGAGCCAGT
ACAGAACTGGCTTACATCAACCACAAGAACTTTCTGCAGATCATGTTCCA
GGCCTGGCAGGATACGCAACAGTGGTTCAGCGATCTCTTCACTGCCCCGC
GCATCAAGACACCTGTCTGGCTGAGCATCACCACCAGTGGCAGCAAGTAC
TCCAAGACTGTGGCCGAGAGATTCATCAAGGAGCTGTGCGACCTACTCTC
CTTCGCCGATACTAAGGACTCTAATTTTTTTATTAGCACCATGCTGACGG
GAATTCTTACTCATCACCTCGGATGGGTAGCCACCGTGTCCGCCTTCAAT
AGCTCCGGTTCTAAACGATCGGAGTCGTCTGCCTCTGCAGCGGCCATTGA
GCAGAGGGCAAAGCTACTCCAAGTTGCCCAGAAGCATCCGTACAATGCGC
TGTGGGCCCAGCTCGGCGACCTTTATGGAGCCATCGGCATGCCGCCGAAG
CTGGCTCGCACCATTGTGTGTGGAGCAGAGAAGCTCTGGGTAGAGAAGCT
GCTAAACGTGCTCACATACTTTATTCGGTGCAGCGAAGTGCGGCGAGCGG
CCAAGCGGGAGGACTTTAACAAGCAGCTTATTAACGACCTTGCCGCCCAG
AGCCAGACGAAAAATCAAACGGGTACGCAGGAGAGGCACAAGAGTCCACC
GACGCAGAAGCGCGGATTGAGCAGGGCGGCAACCTGCAAACAGAATCTAA
ATGCAATTGCTGATGATGCGGACGATGAGAATGGCGAACTGAACATGTAC
GATAGGGACAACGAGGATGGGGACCCAGATGGTTTGGACTCTGGGTCCCT
GGACGCCAGCGATGGCATGCAGACTCTGAAAAAGAATGAGATTCCCACTG
TGTTGGCCTTCCGAGACTCTCACTTTGTGCAGCAGGAGCTGCGTATCGGA
AACTATTTAATGGACACAGGTATTGACAAGAAGATGCTGCTGGCGCGGCA
GGCACAGCAGTACTTTCGTACTGGCAAAGACGGCCGGATCCGTTTGACAG
TAACCACGCCGGATAACGTGGAGCTGTGCATGGAGGAGGAGCAGTCGAGC
GGCACTGGCTCCGTAAGTACAGGTTCCGTGGATGACGGTGCCATCGAGGC
CATCGACTATGAAGACAACGTGGAGGCACCTCCGAAAAAGAATTTCTTTT
GGAACATGGTGCCGGTAGCAGGTGTAAAGGAGGGACTGAGTCTAAGTGAT
TTGGCCAAGCTGCAGCAGGGCATTCGGATCATCAACCGCAAACTGGAGCG
ACGCAGCAGCAGCTACTCCGTTGAGGGAAACCCCGATCAACAGCAGAGCA
AGACTGGAGAAACTGGAGTAGGTGACTTTGAGCCCCTGAGTCATGAGAGA
CGAGCCTCGCATTTGTCACTCTCTGATTTGATAACGCAGAACAGCATGGG
CAAAAGCGATCGCATGACATGGGGCATTGAGCCCATAAAAGAAAACGTTA
GCCTGGAGGAGCAGATTCATTTTGATCACTGCCACAAGCTAATCGAGCGT
GAGCACGGCATCTGTCGACAAACATCCGCAGATAATGGCAACGGAGTAGT
CTTCGTCCTGGGCGACAATGAGCCACTGATCAACCTGAAAAAGAGCAGTG
AGGACCTGAGCGGAGATCAAGATTCTAAGCCAACTCTAATGCTGTGTGCA
CAACATCAGCGCACCCACGACAGAAGCAAGCACTCGGGTATGAAGTTCAA
TTTTGAACAGTATCCGCAAATAGCTACCAACTATATGAAGAACAAGAATC
TATTGATGTCTAACTACGATCTGCTAATGGACAAGGTCACCAAACTGGAG
GCCAGTGAGGCAGCTGCCCTAAAGGGTAGCGATAGCACGGCTACACTAGC
TGCTAGCAGTAGCTCCACGGCTGCACTGCTTCCACCGACAACTCCAGTGA
CTGCGAATAGCGATCGTTGCGTAGTTTGCAGCAGTGGCGTTGGCATAAAT
ACCTCGGCCACCTGGAACCAAACACCTTCCAATGCCACCGAACTGGAATT
CGAGACCGATGAAATGCATTGCTACAATCAAAGCGGGAACGGTAATGGAT
TCAGCTCAAAGGCTCTACAATCTGTAAACTCTGCGGCCTCCATAGACACG
CTAAAGTCCTCTGTTGCAGTCGAACCACCAACTCCAACGATCCCAACCCA
AATGCAGACCACGTACATGCGCAAGCAGCAGCCCAAACGAGTGCCGTCAG
GACGCAGTTCCGTCTCCTCGGTGGCCGCCAAGTGTGCAGCGGTCAACGTG
TCTCAGCAGCTCTTGAAACTGCCTGTTCCGGGCATCAAGGAATTGCCGCA
GGACGACGAATCTCCAGGCGACCAGCTGCGTGCCGGCTTCATTCCCTCGC
TGCTGTTAAGCGTTAGCGATCATTACGTCTCAGACATGGTATTGCAGGGT
ACTTGTGCTCCGCCCAATAAGTGGGAGATGCATCTGCGGGAGGATCTAGC
TCTGGCTGCGCGCTCAGCCTCGCTAATCTCGCAGCCGGCGGAGAACATTG
CAATTGTGGCGGACATGGACAAGTGGGATGTACGGCTAATTTCATCTCAG
ACGCAGCAGTTTCCTTATGCCGGTGGTCAGAGTTCTCCCGTGGGCATGTC
TCAGCTAGTGTCCAGCATGCTGGAAACCGTACAGGCCATGAATGCAGGCG
GCATACCAGCCTATGAGTGTTTGTCGTTCTTGGAGTCCAAGTTACAGGAA
ATCTACCTACAATCGGAAACTTTGGCAGCATTCCTGCTTGAGACTGATCC
GTGCCGACTGAGCGACATTACAAATCCACTGCAGTTGTCCGAAAATGATG
TACCATTGCTGCTGTCAATAGCATATATTCACACGCCCAAGATCAGCCGC
AAGTGCGGCATCAGCTTCAGGGCAAGCTTTCTAGACCAT
BO28674.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3764-RC | 4158 | CG3764-PC | 1..4155 | 17..4171 | 20775 | 100 | Plus |
| CG3764-RA | 4158 | CG3764-PA | 1..4155 | 17..4171 | 20775 | 100 | Plus |
| CG3764-RB | 4410 | CG3764-PB | 279..4407 | 43..4171 | 20645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3764-RC | 5092 | CG3764-RC | 242..4397 | 16..4171 | 20780 | 100 | Plus |
| CG3764-RA | 5195 | CG3764-RA | 345..4500 | 16..4171 | 20780 | 100 | Plus |
| CG3764-RB | 6001 | CG3764-RB | 1178..5306 | 43..4171 | 20645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16996014..16998184 | 3698..1528 | 10855 | 100 | Minus |
| 3L | 28110227 | 3L | 16998525..16999549 | 1339..315 | 5125 | 100 | Minus |
| 3L | 28110227 | 3L | 16999739..17000012 | 316..43 | 1370 | 100 | Minus |
| 3L | 28110227 | 3L | 16995677..16995948 | 3967..3696 | 1360 | 100 | Minus |
| 3L | 28110227 | 3L | 16995412..16995617 | 4171..3966 | 1030 | 100 | Minus |
| 3L | 28110227 | 3L | 16998270..16998460 | 1527..1337 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:34:57 has no hits.
BO28674.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 10:22:29 Download gff for
BO28674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RA | 260..4414 | 17..4173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:25 Download gff for
BO28674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RA | 346..4500 | 17..4173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:17 Download gff for
BO28674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3764-RA | 346..4500 | 17..4173 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:17 Download gff for
BO28674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16995408..16995615 | 3968..4173 | 99 | <- | Minus |
| 3L | 16995677..16995946 | 3698..3967 | 100 | <- | Minus |
| 3L | 16996015..16998184 | 1528..3697 | 100 | <- | Minus |
| 3L | 16998270..16998457 | 1340..1527 | 100 | <- | Minus |
| 3L | 16998525..16999547 | 317..1339 | 100 | <- | Minus |
| 3L | 16999739..17000012 | 43..316 | 100 | <- | Minus |
| 3L | 17001516..17001541 | 17..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:25 Download gff for
BO28674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16991370..16991557 | 1340..1527 | 100 | <- | Minus |
| arm_3L | 16989115..16991284 | 1528..3697 | 100 | <- | Minus |
| arm_3L | 16988508..16988715 | 3968..4173 | 99 | <- | Minus |
| arm_3L | 16988777..16989046 | 3698..3967 | 100 | <- | Minus |
| arm_3L | 16991625..16992647 | 317..1339 | 100 | <- | Minus |
| arm_3L | 16992839..16993112 | 43..316 | 100 | <- | Minus |
| arm_3L | 16994616..16994641 | 17..42 | 100 | | Minus |
BO28674.pep Sequence
Translation from 16 to 4189
> BO28674.pep
MHTPPFKSNRFPFEGSQVRVLLYKEDDTRRLLFDSNALQKVMHKDQSATS
ASISSTSTSGGGKFLKNEKYTSLQNGKIPSKSHSSNGSNFIEVCAEYGYK
HNRPSGADITPVGEMVFGSLPMSFCGTALKVHWLPEPSRILCSQVYLTPT
SNGGSGHSPYSTLSTNSLATPRTSICSEHGSMDGLSMNSFSMPFSVSVGR
QMSLTPPLDVPATPADQQSLSIHSIDSSGPRYSSTYSTATDSGYSASGSG
SAAGGDQWSYQYSSTRSSLGSVLSDQSDAMRKLSMDLACYTGSPYLDGFA
SDGCLQRRISRNLRTSFENEHSKNDFIGFLSDNYALNGPVVAPAGGGAGG
GSEGGGMAPPQYRRASYCANETRSNPEMGRRQANLRRRAKLGLAVCISMS
ESFEEEMELFCSEHIALLESMLSRLRASTELAYINHKNFLQIMFQAWQDT
QQWFSDLFTAPRIKTPVWLSITTSGSKYSKTVAERFIKELCDLLSFADTK
DSNFFISTMLTGILTHHLGWVATVSAFNSSGSKRSESSASAAAIEQRAKL
LQVAQKHPYNALWAQLGDLYGAIGMPPKLARTIVCGAEKLWVEKLLNVLT
YFIRCSEVRRAAKREDFNKQLINDLAAQSQTKNQTGTQERHKSPPTQKRG
LSRAATCKQNLNAIADDADDENGELNMYDRDNEDGDPDGLDSGSLDASDG
MQTLKKNEIPTVLAFRDSHFVQQELRIGNYLMDTGIDKKMLLARQAQQYF
RTGKDGRIRLTVTTPDNVELCMEEEQSSGTGSVSTGSVDDGAIEAIDYED
NVEAPPKKNFFWNMVPVAGVKEGLSLSDLAKLQQGIRIINRKLERRSSSY
SVEGNPDQQQSKTGETGVGDFEPLSHERRASHLSLSDLITQNSMGKSDRM
TWGIEPIKENVSLEEQIHFDHCHKLIEREHGICRQTSADNGNGVVFVLGD
NEPLINLKKSSEDLSGDQDSKPTLMLCAQHQRTHDRSKHSGMKFNFEQYP
QIATNYMKNKNLLMSNYDLLMDKVTKLEASEAAALKGSDSTATLAASSSS
TAALLPPTTPVTANSDRCVVCSSGVGINTSATWNQTPSNATELEFETDEM
HCYNQSGNGNGFSSKALQSVNSAASIDTLKSSVAVEPPTPTIPTQMQTTY
MRKQQPKRVPSGRSSVSSVAAKCAAVNVSQQLLKLPVPGIKELPQDDESP
GDQLRAGFIPSLLLSVSDHYVSDMVLQGTCAPPNKWEMHLREDLALAARS
ASLISQPAENIAIVADMDKWDVRLISSQTQQFPYAGGQSSPVGMSQLVSS
MLETVQAMNAGGIPAYECLSFLESKLQEIYLQSETLAAFLLETDPCRLSD
ITNPLQLSENDVPLLLSIAYIHTPKISRKCGISFRASFLDH
BO28674.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3764-PC | 1385 | CG3764-PC | 1..1385 | 1..1385 | 7152 | 100 | Plus |
| CG3764-PA | 1385 | CG3764-PA | 1..1385 | 1..1385 | 7152 | 100 | Plus |
| CG3764-PB | 1469 | CG3764-PB | 93..1469 | 9..1385 | 7100 | 99.9 | Plus |
