BO28676.complete Sequence
4420 bp assembled on 2011-08-05
GenBank Submission: KX797490
> BO28676.complete
GAAGTTATCAGTCGACATGTCTTCCGGCCTGATGTCGTGTGTAAGGGAAA
ACTCGCCGCCGCTGGAATCGGAGTTGGATGCCAGCTGCGCCGGGGGACCA
TTGTCATTGCCGGCGGGCCGCGCCCACCCGCACACCCACGGCGCCACCTC
AACGCCCATCTCCAGTCCAGGAAACGATGCCCATCAGTCCCCGACCGCCG
AGCATCCAAATCAGCAGCAGCAACAGCAGCAGCAGAAGCGTCGTCGTTTC
CATCCGCTTCGTAACCTGCGTCGCATCTTCCGGCGACGTACGATTAATAG
CTCCACGGACAGTCCAGCATCCTGTCAGTCGCCAGGACCCGGATCCTGCA
ACACCTTGCCACCGCCCGCCAGCAGCAGCAGTGAGAAGAATCTGCGCAGC
GGGATCGCCTCGCCAACAGGATCTCCCCTGAATCCCCAGCAGCTGAAGGA
GAACTACCAGACGCAATCGCTGCCCAAGTCCAAATCGTACGGTTCGCATC
GCGATGAGCTGCTAAGTGTGCTTCTGGGCAAAAAACGGGCCAGCAAGCAG
GACCACAGCCAGGTTGCAGTCCAACCCGATTCCCAAGCGCAGTCGCAATC
GCCGCAGGAAGCCATGTACCAGGCCCAGCGACAGCATGGCGGCGTGGCCG
TCTTCCCGGATTCACTAGTCCTTAACCGGAGCAGCTACTTTGCCGAGCAG
AGAATCCAACAGCGCCATCTACGCAGCGTGGGTGACTCCTCGCAGGAACT
GGAGTCCAACCTAGGCTTGGGATCAGGATCAGGATCAGGATCCGGAGCTG
GTGGCGCCGCTGACATCTCCGACAGCCAGCGTAGCCTCAGCGAAGGTCGA
CTCCTGGATGTGGACGGGGATTACTCTCGGGATACCCTGTCCCAGTCACA
TGACAGCGTCTTCTCTGAATCGGCCACAGCCAGCAGTCTATCCATTGTAC
TCAAGGCGGAACTCACGGATGTCCTGCGCAAGCGACGCAACAGACCCGAT
GCCTCTGACGAGGATTTGGGTCTGCCCCGCAGCCCGGCTTCTCCGCAACG
GCGAGCAGGGGGTGGAACCAGCAGTCGAAATACCTCCGGAGTGGGTCACC
AATCGCGGGGTCACCAGAGCGAGGTGTCTTCACTCAGCTTGCACAGTGTC
AATAGTGCCGAAGTGGAGACGGAGGACAGCCAGAGCTCCCATCAATACCG
TCATCACTCGCGAGTTTCCACCAGTTCATCCATCTCGATGGGCTCGGATA
TACTGCGATCACATCACGAGGACGACGTGGACGCCGTGGGCGGAGAACGT
CATCGTCTTTCCCATGCGGCGGCCAAGCACAAAATGGCCATTAGGCCTGT
GAAAAAGAAAGGACCCACCAGGCAGCACCGGATGACATTGGAGACTTCCA
TTCCGGAGGCCAATGAGGATGTGCTAAAGATTAGCCCTGGATTGAGGGCT
GTCCATGAAGCCGATCTCAAGATCAAGACGCGCTCTTTGCCACCGAAAAC
TTTAACTGCCATTGCACCGCCGGTTCAGGCTAACGCCGCCAGCTCGGTGA
CAACCAAGCGAACCAATACAATCGAGCAGAGCTCCACCATCACCAGCACC
ACTAAGACCACAAGCTCGTCCTCCACGACATCTCAGATGTTCGGACTTCG
AGGTCTGACCAGCAAGAGCAACGCTTTGCTGGAGAATCGCGGAGAGTCTT
CCACGGATGGGGACGACTTCCTGGCCAACGAGCGGGAGAAGGAGAACGAG
AGTGGATTCCTGCGCCGCCTGATCCACCGGAACTCCAAGAGATCCATAGC
CAGGGCCAACGACGGAGTTGAGGATACAGATTCCAGCCAGAGCGTGGCCA
AGAAGCTGCAGATCTCAACCTCCTGCTTGGAGGCCGCTGCTCGGGATGCC
GTTCAAGTGCCGGACAAGTCACGCAGTGCCACATCGCACGAGCAGCACAT
CCAGGAGACGCGACAAACAATCAAGCGGGAGATTCACAACGAGGGCAAGC
ACGGATTGAACGCCATGGTCAGTAACTACGGTGTGCATCCACATCCACCC
ACGGCATTAAAGCCGAAATCAGGTCCTGCCGCCAGGCAGCGATACATGCC
CAAGGAACTGGGAGCTGCTCCGCTGGAGAAGATCACCTCGGGTAACGATG
TGACCAACTTGCTGTCGAAGAGCTCGCGGGGCAACGACACCTTCCAGTCC
ACCACTTTGGTGCGGGAACAGCAGAACAAAGTGGAGACCTCAACGCATTT
CGAGAGGAAACCAAGGATTGTGGGCTTGAGTGCCTTCCAGCAGAAGCTAT
CGCGATCCAGTGACTCAGTGGGCCAGCACTCCAGCTCCTCCAACTCGTTG
GAGACCAGCACGGATGAGCCCTCGCCCCTGTACTACGAGGAGAAGCAGCG
CAAGACAATTGAAAAGTCCCGCAGCTTTCGAAATTATGAGGACGAGGCTG
TGGACTCCACGGCCGTGCACAACAATATGCCGAGTTTGCCGGATCTGTCG
CTAAGTTTTCGTGTGCCTGCCTACCACAAGCAGGCGCCACAATCGCCCTG
TTCCCCGATTTCCTCCAACGCCAAGTGTGTGTCACTGGGATTCGAGATCA
ACGACAACAAATTGCTGCAGTCCCGAGCTGAATCCACGGGCCAGTTGCCA
TCTGCTGCGAAAATCTCACCGCAAAAGGCCGCTTCCACAAAGCTAATAGT
TAGTAGTCCGGGTTCGGCTGATATCTCCAAGATCGAGCAGAACATTGACC
TTATCGTGAAATCACCTCTGGTGAGCGTTCTAAGGAAATCCGGTAATGTG
GCGGATAAGCTGCCCAAGGAGCAAACTGCTCCGACCAAACAGCGACCTAA
GCTACTCGATTTGGGAGCAAAGATGACAGCTCCTGCGGCAAATCCAAGTC
CCAGCCCGGCAAGTCCTTTGACCAAGAGTGCCAAGCTCTCGAACAGTCCA
CCCACCACACCGGCCAAAGGTCAGGGATCCTCCAACAGCAGTCGCCGGAA
TTCCAGTAACGTGGAGAATAACGGTGAGCCGGAGTTCATGAAGATCCAGC
TGAATCGCGTGGACCAGGCGCGTCTGCACAACAAGACCAATCACTTGGTG
CTAGCCAAGAACTTTAAGTCGCCCACGGAGCGGAGTCAGAGCAACGATGA
TCTCAGCTTCCGACGGAGCAGCGAAGAAAATCTGGCGGGAATCGAGATTG
TGGAGCACCCTCAGCCGAAGCCTCTAAGTCCGGCAATCAGGCCAACGGCA
CTGGAGCCCAGCTTGAGCAGGCAATTGAAATCCGTTAGTGCCACTAGTAT
GAGGAATAGCTATGGTAGTAGTAGTGAAGGATTAGCCACTCCAGTTACTC
CAGTCACTACACCAAGCACACCTAAAAGCAATGGGTTTTCGAAAAGTATT
CTCAGTGCTCCCAAGAACGTAAAGGAAGTTAAAGATACCAAGGAGCCAGT
CAGCCCGAAGGAGCCAGTGAAGAGCAATCGCCTCTCTCTGGAGGATCGCA
AGCGGTTATTCCTCAGCGAAGAGCGAACGAAGTCAGTGGAGCAGCGCAGG
AAGTCCATTACCAAGACAGAAAGCACTGCTCCACCCACTCCTTCGGTGAT
TCCAGCCACGCCCGCCATTCCAGTCACTCCGGTTACTCCCACCTCTCCCG
AAATATTCGAGGTCAATGGCAACACTTCACCCACCTCCAATCCCGTGGTG
TTGCGCAAGAAATCCTTTGCGAGCTGCAATGGCAATCCCAGTCCCTCCAA
GGACGATCCCACACCCGAGCTGATGAAGGTCTTTGCCCGCCGTTCACTAA
AAGTGAAGGATGATGACGTTGTGACATTGCCACAGGTACAACCAGCCGCT
CCAGTGAGCAGCAACAGTAAGAAGCTGTCGCCCAGTGGAGGCGGAGGTCA
GAGCGTGGATAGCGACAAGGAGAATCAGTCGAACAGCGAGGAGAAGCTGG
ACAAGCTGGCGCCCAAGAGCGAGCCCCAGGCGACCCATCACCCCAGCACC
AATCGCAATTCGGTTGCAGACTTCCGCAATCTCAACAATAATAACAATAA
CCATCAGCAGCAACAGAAGGTGCCACCCAAGGTGGTCACCTACCTGCCCC
CCATTAAGACCAGCAATCAGGGCCGCAATAGCCTGAATAACAATATAAGC
AATGGTAATGGGAGTGCAAGGCCCGCTGCTGAAAGGTTTTCCCTGCAACT
GAAGCAGGCCAACCCGACAGCAACTACTCCAACGTCTCCGGCAGCAGCAA
CACCTGTTGCAGCACCAACTGCAACATCTGCAGCAGCAACAGCATCAGTA
GCGCCCAGTAAACCCATCGAGAGATCAGCCACCGTGGGCGAGTTCAAGGG
AATCCACCAGAGACGCGCCGAGTGGGAGCAGAGGGCCAAGGAGGCGCTAA
AGGCAAGCTTTCTAGACCAT
BO28676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30015-RF | 4428 | CG30015-PF | 38..4425 | 15..4402 | 21940 | 100 | Plus |
CG30015-RB | 4389 | CG30015-PB | 1..4386 | 17..4402 | 21930 | 100 | Plus |
CG30015-RA | 4389 | CG30015-PA | 1..4386 | 17..4402 | 21930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:41:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30015-RF | 5363 | CG30015-RF | 172..4559 | 15..4402 | 21940 | 100 | Plus |
CG30015-RB | 6242 | CG30015-RB | 1052..5438 | 16..4402 | 21935 | 100 | Plus |
CG30015-RA | 5525 | CG30015-RA | 335..4721 | 16..4402 | 21935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10839906..10842851 | 4402..1457 | 14730 | 100 | Minus |
2R | 25286936 | 2R | 10848593..10849261 | 868..200 | 3345 | 100 | Minus |
2R | 25286936 | 2R | 10843074..10843513 | 1393..954 | 2200 | 100 | Minus |
2R | 25286936 | 2R | 10856124..10856308 | 200..16 | 925 | 100 | Minus |
2R | 25286936 | 2R | 10848452..10848541 | 956..867 | 450 | 100 | Minus |
2R | 25286936 | 2R | 10842918..10842983 | 1457..1392 | 330 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 01:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6821 | 4218..4302 | 218 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2658 | 3964..4302 | 203 | 55.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2735..2829 | 4210..4302 | 199 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6889 | 4196..4334 | 199 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6621..6800 | 4119..4302 | 198 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2418 | 4215..4302 | 197 | 69.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6811 | 4242..4334 | 196 | 72.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2293..2395 | 4193..4297 | 196 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6645..6833 | 4105..4302 | 194 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6951 | 4193..4346 | 191 | 62.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2525 | 4218..4307 | 189 | 67.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6864 | 4193..4294 | 185 | 67.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6908 | 4193..4318 | 185 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2428 | 4218..4297 | 184 | 70 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1048..1148 | 4202..4302 | 181 | 64.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6923 | 4109..4296 | 175 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2492 | 4193..4316 | 174 | 62.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1027..1130 | 4197..4302 | 174 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1599 | 4222..4316 | 172 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2379 | 4230..4302 | 158 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1587 | 4202..4290 | 154 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1591 | 4258..4333 | 154 | 70.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2860 | 4210..4294 | 150 | 67.4 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 508..573 | 4222..4290 | 149 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6790 | 4264..4334 | 147 | 70.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1148 | 4246..4332 | 145 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2927 | 4193..4323 | 144 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2539 | 4036..4276 | 140 | 55.7 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 513..565 | 4242..4297 | 138 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2800 | 4247..4297 | 137 | 75.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2390 | 4259..4334 | 135 | 67.1 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3225..3386 | 4173..4327 | 128 | 58.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 115..196 | 4203..4286 | 127 | 64.7 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9145..9226 | 4203..4286 | 127 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1587 | 4215..4269 | 124 | 72.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1052..1163 | 4184..4290 | 124 | 60.7 | Plus |
BO28676.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-05 13:39:06 Download gff for
BO28676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30015-RB | 987..5372 | 17..4404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:46 Download gff for
BO28676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30015-RF | 174..4559 | 17..4404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:30:10 Download gff for
BO28676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30015-RF | 174..4559 | 17..4404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:30:10 Download gff for
BO28676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10839904..10842850 | 1458..4404 | 99 | <- | Minus |
2R | 10842918..10842981 | 1394..1457 | 100 | <- | Minus |
2R | 10843074..10843511 | 956..1393 | 100 | <- | Minus |
2R | 10848453..10848540 | 868..955 | 100 | <- | Minus |
2R | 10848594..10849260 | 201..867 | 100 | <- | Minus |
2R | 10856124..10856307 | 17..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:46 Download gff for
BO28676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6727409..6730355 | 1458..4404 | 99 | <- | Minus |
arm_2R | 6730423..6730486 | 1394..1457 | 100 | <- | Minus |
arm_2R | 6730579..6731016 | 956..1393 | 100 | <- | Minus |
arm_2R | 6735958..6736045 | 868..955 | 100 | <- | Minus |
arm_2R | 6736099..6736765 | 201..867 | 100 | <- | Minus |
arm_2R | 6743629..6743812 | 17..200 | 100 | | Minus |
BO28676.pep Sequence
Translation from 16 to 4420
> BO28676.pep
MSSGLMSCVRENSPPLESELDASCAGGPLSLPAGRAHPHTHGATSTPISS
PGNDAHQSPTAEHPNQQQQQQQQKRRRFHPLRNLRRIFRRRTINSSTDSP
ASCQSPGPGSCNTLPPPASSSSEKNLRSGIASPTGSPLNPQQLKENYQTQ
SLPKSKSYGSHRDELLSVLLGKKRASKQDHSQVAVQPDSQAQSQSPQEAM
YQAQRQHGGVAVFPDSLVLNRSSYFAEQRIQQRHLRSVGDSSQELESNLG
LGSGSGSGSGAGGAADISDSQRSLSEGRLLDVDGDYSRDTLSQSHDSVFS
ESATASSLSIVLKAELTDVLRKRRNRPDASDEDLGLPRSPASPQRRAGGG
TSSRNTSGVGHQSRGHQSEVSSLSLHSVNSAEVETEDSQSSHQYRHHSRV
STSSSISMGSDILRSHHEDDVDAVGGERHRLSHAAAKHKMAIRPVKKKGP
TRQHRMTLETSIPEANEDVLKISPGLRAVHEADLKIKTRSLPPKTLTAIA
PPVQANAASSVTTKRTNTIEQSSTITSTTKTTSSSSTTSQMFGLRGLTSK
SNALLENRGESSTDGDDFLANEREKENESGFLRRLIHRNSKRSIARANDG
VEDTDSSQSVAKKLQISTSCLEAAARDAVQVPDKSRSATSHEQHIQETRQ
TIKREIHNEGKHGLNAMVSNYGVHPHPPTALKPKSGPAARQRYMPKELGA
APLEKITSGNDVTNLLSKSSRGNDTFQSTTLVREQQNKVETSTHFERKPR
IVGLSAFQQKLSRSSDSVGQHSSSSNSLETSTDEPSPLYYEEKQRKTIEK
SRSFRNYEDEAVDSTAVHNNMPSLPDLSLSFRVPAYHKQAPQSPCSPISS
NAKCVSLGFEINDNKLLQSRAESTGQLPSAAKISPQKAASTKLIVSSPGS
ADISKIEQNIDLIVKSPLVSVLRKSGNVADKLPKEQTAPTKQRPKLLDLG
AKMTAPAANPSPSPASPLTKSAKLSNSPPTTPAKGQGSSNSSRRNSSNVE
NNGEPEFMKIQLNRVDQARLHNKTNHLVLAKNFKSPTERSQSNDDLSFRR
SSEENLAGIEIVEHPQPKPLSPAIRPTALEPSLSRQLKSVSATSMRNSYG
SSSEGLATPVTPVTTPSTPKSNGFSKSILSAPKNVKEVKDTKEPVSPKEP
VKSNRLSLEDRKRLFLSEERTKSVEQRRKSITKTESTAPPTPSVIPATPA
IPVTPVTPTSPEIFEVNGNTSPTSNPVVLRKKSFASCNGNPSPSKDDPTP
ELMKVFARRSLKVKDDDVVTLPQVQPAAPVSSNSKKLSPSGGGGQSVDSD
KENQSNSEEKLDKLAPKSEPQATHHPSTNRNSVADFRNLNNNNNNHQQQQ
KVPPKVVTYLPPIKTSNQGRNSLNNNISNGNGSARPAAERFSLQLKQANP
TATTPTSPAAATPVAAPTATSAAATASVAPSKPIERSATVGEFKGIHQRR
AEWEQRAKEALKASFLDH
BO28676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:16:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30015-PF | 1475 | CG30015-PF | 14..1475 | 1..1462 | 7407 | 100 | Plus |
CG30015-PB | 1462 | CG30015-PB | 1..1462 | 1..1462 | 7407 | 100 | Plus |
CG30015-PA | 1462 | CG30015-PA | 1..1462 | 1..1462 | 7407 | 100 | Plus |
CG30015-PE | 1510 | CG30015-PE | 1..1510 | 1..1462 | 7348 | 96.8 | Plus |
CG30015-PC | 1510 | CG30015-PC | 1..1510 | 1..1462 | 7348 | 96.8 | Plus |