BO28686.complete Sequence
1414 bp assembled on 2011-07-13
> BO28686.complete
GAAGTTATCAGTCGACATGAAGCGCGACGTGTCCACGTCGACCATCGGCC
GGGATGAGGCCCGTCGTCCGCTGATGGAGGCCTACATGTTCCAGCGGCGC
GTGCTGCTCGGCTGCAGTCTGCTCATGGTGGTTTCGCTGCTAATCTGGAT
AGTGGCCATCTCGACCGATCACTGGATCATCATATCCGGCGGAAAGGGCA
TTTTTATACCCGAATCTCGACGCTTCTTTATGTCCTCGCACTCGGGCTTG
TGGCGCCACTGCCGGAACACGATAGTGCCCAATGCCATGAGCAATGCCCA
GGTGGTGCGCAACTTTAGCTCCATGTCGTACACATCGCAGACGAACATCA
ACGAGGCGAAGCGGAATCTCTCGCAAATGGACTTCATCAAGGAGTTCGCG
CACGAGAAGCTGGAAACGTCGGACAACTTTACGGAATCGGCGCGTCGCCA
CATGTTTGCCCATTGGGTACGGGGCGAGGATATGGAGTTCCAGACGCTGC
GCCATGCCTTTCGCACCCTGGTGATGAACACCGAGGAGAATCAGCGGCAG
TTTAATGCCACGGCCATTAAGCCCATACCCATCAATCCGCTGGACGTGCA
GGGAATCATTGAGAGAAATACTTTCGGTTCGGCGCTGCAGCGGGTTAAGT
ACAACAACACTTGGTCTTACTACGTGATCCCGGAGGTGGCGCAGTTAGCC
ATCTTCAGGAACTGGACGGATTACCCACTGGTGGTACGACTGCTGGGCAC
CTACATCCGGGATATCAGCATCCCGGCCTACGTGCTTAACGATGAACGGG
TGATACTTATCCTAGTGCCACCGCTGCCGCCCAAGAAGGGTCAGCCCGCC
TACTACAGCTATATACCGAACCAGCGCTGCAAATACATCGACATGTTCCC
CAACTCCAATGCTCTGCGAAATGAGCCCGGTTTCGATGACGAACTATTGG
ACTATATCCGGACGCAGGCGTCCTTTGCCTGCATAACACTGTTCGTGATG
AGCTTGGGTGCCGTCTTCTCCTTCTACACGTTCATGAATCCGCGCTACAT
GTTCAAGCGTCTGGCGGGTGGCATCCACTTGGTGGCTGCCTCCACGGCGC
TGGTGGTTCTCCAGGTGCTCTTCTCCTCGATTGACTACACCAAAGAGCAT
CTGTTCTATGCGTATCCTGAAGGGGCGCAACTAACTTATGGCTACGGCGT
TTATTTGGCCTGGTTCACGTTCGTGGACAATATCCTGTGCGGTGTTATGT
TCCTCTGGTATTCTGGCAAGAAGAAGGGTGCCAAGGCGCCCAACGACGAG
GTGGCCATGGCCGACGAGCCGACCATCATGGGCAGAGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGAACCGCAGGTAAGTGGTCGATAATCTATAATT
CAATAAAATCCCAA
BO28686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4984-RB | 1323 | CG4984-PB | 1..1320 | 17..1336 | 6390 | 98.9 | Plus |
| CG4984-RA | 1323 | CG4984-PA | 1..1320 | 17..1336 | 6390 | 98.9 | Plus |
| CG4984-RD | 1344 | CG4984-PD | 1..1341 | 17..1336 | 6145 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:56:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4984-RB | 3112 | CG4984-RB | 1594..2913 | 17..1336 | 6390 | 98.9 | Plus |
| CG4984-RA | 1969 | CG4984-RA | 451..1770 | 17..1336 | 6390 | 98.9 | Plus |
| CG4975-RE | 3112 | CG4975-RE | 1594..2913 | 17..1336 | 6390 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:56:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17731466..17732141 | 197..872 | 3230 | 98.5 | Plus |
| 2R | 25286936 | 2R | 17732344..17732584 | 950..1190 | 1190 | 99.6 | Plus |
| 2R | 25286936 | 2R | 17731204..17731385 | 17..198 | 880 | 98.9 | Plus |
| 2R | 25286936 | 2R | 17732638..17732788 | 1186..1336 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 17732198..17732275 | 873..950 | 360 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:56:25 has no hits.
BO28686.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-13 10:17:22 Download gff for
BO28686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4984-RA | 449..1773 | 17..1343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:13:38 Download gff for
BO28686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4975-RE | 1594..2918 | 17..1343 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:31:07 Download gff for
BO28686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4975-RE | 1594..2918 | 17..1343 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:31:07 Download gff for
BO28686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17732638..17732793 | 1186..1343 | 98 | | Plus |
| 2R | 17732345..17732579 | 951..1185 | 100 | -> | Plus |
| 2R | 17731204..17731384 | 17..197 | 98 | -> | Plus |
| 2R | 17731467..17732141 | 198..872 | 98 | -> | Plus |
| 2R | 17732198..17732275 | 873..950 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:13:38 Download gff for
BO28686.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13618709..13618889 | 17..197 | 98 | -> | Plus |
| arm_2R | 13618972..13619646 | 198..872 | 98 | -> | Plus |
| arm_2R | 13619703..13619780 | 873..950 | 97 | -> | Plus |
| arm_2R | 13619850..13620084 | 951..1185 | 100 | -> | Plus |
| arm_2R | 13620143..13620298 | 1186..1343 | 98 | | Plus |
BO28686.pep Sequence
Translation from 16 to 1414
> BO28686.pep
MKRDVSTSTIGRDEARRPLMEAYMFQRRVLLGCSLLMVVSLLIWIVAIST
DHWIIISGGKGIFIPESRRFFMSSHSGLWRHCRNTIVPNAMSNAQVVRNF
SSMSYTSQTNINEAKRNLSQMDFIKEFAHEKLETSDNFTESARRHMFAHW
VRGEDMEFQTLRHAFRTLVMNTEENQRQFNATAIKPIPINPLDVQGIIER
NTFGSALQRVKYNNTWSYYVIPEVAQLAIFRNWTDYPLVVRLLGTYIRDI
SIPAYVLNDERVILILVPPLPPKKGQPAYYSYIPNQRCKYIDMFPNSNAL
RNEPGFDDELLDYIRTQASFACITLFVMSLGAVFSFYTFMNPRYMFKRLA
GGIHLVAASTALVVLQVLFSSIDYTKEHLFYAYPEGAQLTYGYGVYLAWF
TFVDNILCGVMFLWYSGKKKGAKAPNDEVAMADEPTIMGRASFLDHSFGA
RTAGKWSIIYNSIKSQ
BO28686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4984-PB | 440 | CG4984-PB | 1..440 | 1..440 | 2312 | 100 | Plus |
| CG4984-PA | 440 | CG4984-PA | 1..440 | 1..440 | 2312 | 100 | Plus |
| CG4984-PD | 447 | CG4984-PD | 1..447 | 1..440 | 2294 | 98.4 | Plus |
| CG4984-PC | 447 | CG4984-PC | 1..447 | 1..440 | 2294 | 98.4 | Plus |
