BO28702.complete Sequence
1075 bp assembled on 2011-08-24
GenBank Submission: KX797291
> BO28702.complete
GAAGTTATCAGTCGACATGTCGCTGCTGCTCACCGGAAACAGTGCCTCCC
TTTCCGAGGAGGAGCTCGACGAGTACTCCGATGGAACCGTCAAATTGCGC
AACTCGAACATTGAGCTCATGGACCAGGATATCCTCTATCACCTGGCCTT
GGGCAGCGAGAGCCACGACCTGCAGGAGATGTTTGGCGACGTTAAGTTCG
TTTGCATGGGCGGCACACCAAAGCGCATGGAGAATTTTGCCCATTTCATA
ATGAACGAGATTGGCTACAAGTTGCCAGCGGGCACCCAGCTGCAGGACAT
CAGCGCCTATTCGTATCGCTACTCCATGTACAAAGTGGGACCGGTGCTGT
GCGTCAGCCATGGCATGGGTACGCCCTCGGTCAGCATCCTGATGCATGAG
ATGATCAAGCTGATGTACCACGCCAAGTGCAAGGATCCCGTCTTCATCAG
GATAGGAACGTGCGGAGGAATTGGCGTCGACGGCGGCACCGTCATCATCA
CCGAAGATGCCCTCGATGGGCAGCTGAGGAACTCCCATGAGTTTACCATT
CTCGGCAAGACCATCCATCGTCCTGCCAAGCTGGACAAAAAGCTGGCCCG
TGAGCTAAAGTCCCTGGCCAGTCCCGATGATCCGTACGATACCATTATTG
GCAAGACGCTGTGCACCAACGATTTCTACGAGGGCCAGGGTCGTTTGGAC
GGCGCATTCTGTGATTTCAGCGAGAACGAGAAGATGGCCTATCTGGAGAA
GCTGCGCGAGAACGGCGTGGTCAACATCGAGATGGAGAGCACCATCTTTG
CGGCCCTGACCCACCATGCCGGCATCAAGGCAGCGGTGGTGTGTGTCGCC
CTGCTGAACCGCCTCAATGGGGATCAGGTCAACGCGCCCAAGGAGGTCAT
GAACGAGTGGCAAGCGCGTCCGCAGATCCTCGTGTCGCGCTATATTCGCA
AGGTCCTTACGCACAATGGACAGCTGAAGGCGCTATTCGGACACCAGGGA
TCCATCAAGTCACCCCGGCGCTTCAAGCTCGTCCAGCAGGAGTCTCAGGC
CCACGAGGCAAGCTTTCTAGACCAT
BO28702.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6330-RB | 1044 | CG6330-PB | 1..1041 | 17..1057 | 5205 | 100 | Plus |
| CG6330-RA | 1107 | CG6330-PA | 120..1104 | 73..1057 | 4925 | 100 | Plus |
| CG3788-RB | 1137 | CG3788-PB | 390..566 | 322..498 | 345 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6330-RB | 2075 | CG6330-RB | 299..1339 | 17..1057 | 5205 | 100 | Plus |
| CG6330-RA | 1541 | CG6330-RA | 252..1236 | 73..1057 | 4925 | 100 | Plus |
| CG3788-RB | 1758 | CG3788-RB | 928..1104 | 322..498 | 345 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26950638..26951009 | 916..545 | 1860 | 100 | Minus |
| 3R | 32079331 | 3R | 26951072..26951428 | 544..188 | 1755 | 99.4 | Minus |
| 3R | 32079331 | 3R | 26950428..26950569 | 1057..916 | 710 | 100 | Minus |
| 3R | 32079331 | 3R | 26951775..26951898 | 196..73 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 22932746..22932922 | 498..322 | 345 | 79.7 | Minus |
| 3R | 32079331 | 3R | 26956517..26956575 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 06:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 200..283 | 200..118 | 111 | 60.7 | Minus |
| Tabor | 7345 | Tabor TABOR 7345bp | 7039..7122 | 200..118 | 111 | 60.7 | Minus |
BO28702.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:23 Download gff for
BO28702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6330-RB | 295..1335 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:10 Download gff for
BO28702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6330-RB | 299..1339 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:31 Download gff for
BO28702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6330-RB | 299..1339 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:31 Download gff for
BO28702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26950638..26951009 | 545..916 | 100 | <- | Minus |
| 3R | 26951072..26951419 | 197..544 | 100 | <- | Minus |
| 3R | 26951775..26951898 | 73..196 | 100 | <- | Minus |
| 3R | 26956520..26956575 | 17..72 | 100 | | Minus |
| 3R | 26950426..26950568 | 917..1059 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:10 Download gff for
BO28702.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22776148..22776290 | 917..1059 | 98 | <- | Minus |
| arm_3R | 22776360..22776731 | 545..916 | 100 | <- | Minus |
| arm_3R | 22776794..22777141 | 197..544 | 100 | <- | Minus |
| arm_3R | 22777497..22777620 | 73..196 | 100 | <- | Minus |
| arm_3R | 22782242..22782297 | 17..72 | 100 | | Minus |
BO28702.pep Sequence
Translation from 16 to 1075
> BO28702.pep
MSLLLTGNSASLSEEELDEYSDGTVKLRNSNIELMDQDILYHLALGSESH
DLQEMFGDVKFVCMGGTPKRMENFAHFIMNEIGYKLPAGTQLQDISAYSY
RYSMYKVGPVLCVSHGMGTPSVSILMHEMIKLMYHAKCKDPVFIRIGTCG
GIGVDGGTVIITEDALDGQLRNSHEFTILGKTIHRPAKLDKKLARELKSL
ASPDDPYDTIIGKTLCTNDFYEGQGRLDGAFCDFSENEKMAYLEKLRENG
VVNIEMESTIFAALTHHAGIKAAVVCVALLNRLNGDQVNAPKEVMNEWQA
RPQILVSRYIRKVLTHNGQLKALFGHQGSIKSPRRFKLVQQESQAHEASF
LDH
BO28702.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6330-PB | 347 | CG6330-PB | 1..347 | 1..347 | 1806 | 100 | Plus |
| CG6330-PA | 368 | CG6330-PA | 23..368 | 10..347 | 1724 | 96 | Plus |
| CG3788-PB | 378 | CG3788-PB | 46..346 | 18..317 | 932 | 57.5 | Plus |
| CG3788-PA | 378 | CG3788-PA | 46..346 | 18..317 | 932 | 57.5 | Plus |
| CG17224-PD | 300 | CG17224-PD | 2..298 | 21..314 | 693 | 45.2 | Plus |
